Wall clock time and date at job start Wed Apr 15 2020 11:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99965 * 2 1 4 4 H 1.48501 * 109.47285 * 269.99955 * 3 2 1 5 5 H 1.48504 * 109.47506 * 30.00208 * 3 2 1 6 6 H 1.48502 * 109.47051 * 150.00235 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.34777 * 119.99511 * 65.28308 * 14 11 10 16 16 O 1.21553 * 120.00289 * 359.71846 * 15 14 11 17 17 C 1.47841 * 119.99890 * 179.72145 * 15 14 11 18 18 C 1.40022 * 120.56277 * 179.72058 * 17 15 14 19 19 C 1.38354 * 118.28856 * 179.73560 * 18 17 15 20 20 C 1.38347 * 119.30607 * 0.55971 * 19 18 17 21 21 N 1.31934 * 121.07777 * 359.70164 * 20 19 18 22 22 C 1.31691 * 121.87654 * 359.97438 * 21 20 19 23 23 H 0.97007 * 119.99442 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.46912 * 60.00244 * 9 7 2 25 25 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 26 26 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 27 27 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 28 28 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 29 29 H 1.08004 * 120.84891 * 359.97438 * 18 17 15 30 30 H 1.07996 * 120.34662 * 180.25955 * 19 18 17 31 31 H 1.07998 * 119.46561 * 179.71812 * 20 19 18 32 32 H 1.08003 * 119.71198 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6629 -5.4194 -1.2375 13 8 0.6654 -5.4199 1.2366 14 7 2.5203 -6.3927 -0.0033 15 6 3.3447 -6.5166 1.0558 16 8 3.2238 -5.7737 2.0103 17 6 4.3962 -7.5559 1.0565 18 6 5.2628 -7.6912 2.1480 19 6 6.2260 -8.6833 2.1013 20 6 6.3091 -9.4945 0.9837 21 7 5.4822 -9.3403 -0.0327 22 6 4.5451 -8.4150 -0.0327 23 1 -0.4850 0.8402 -0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8725 -3.6047 0.8878 27 1 2.8712 -3.6040 -0.8922 28 1 2.6168 -6.9855 -0.7650 29 1 5.1788 -7.0403 3.0058 30 1 6.9090 -8.8198 2.9267 31 1 7.0629 -10.2667 0.9427 32 1 3.8867 -8.3200 -0.8835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181293967.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:52 Heat of formation + Delta-G solvation = -106.002361 kcal Electronic energy + Delta-G solvation = -19598.161876 eV Core-core repulsion = 16263.840168 eV Total energy + Delta-G solvation = -3334.321708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.89663 -40.32819 -38.33391 -37.27973 -36.01447 -35.83170 -33.62490 -33.19216 -32.39989 -27.67286 -26.20093 -24.61117 -23.68094 -22.81230 -20.86932 -19.82281 -19.22267 -18.43793 -17.91329 -17.41014 -17.08056 -16.81535 -16.53777 -16.36820 -16.35113 -15.24435 -15.00190 -14.76648 -14.49525 -14.19185 -13.87027 -13.77443 -13.41579 -13.31735 -13.25146 -12.95518 -12.85919 -12.36021 -12.28876 -12.08705 -11.84901 -11.71382 -11.11900 -11.04165 -10.65874 -10.57692 -10.30730 -8.27875 -6.41973 -1.07371 -0.57800 0.16312 1.21269 1.38312 1.40287 1.42450 1.53666 2.36199 2.50669 2.74911 2.86375 3.05689 3.13316 3.40177 3.69381 3.73691 3.88911 3.95542 3.99246 4.03090 4.38733 4.63516 4.67396 4.94670 5.05622 5.21428 5.22626 5.52041 5.55822 5.65843 6.02782 6.24293 6.70519 6.78953 7.28042 8.84531 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.025083 B = 0.004064 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.020205 B = 6887.960337 C = 7502.621042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.022 3.978 10 C -0.577 4.577 11 S 2.601 3.399 12 O -0.965 6.965 13 O -0.975 6.975 14 N -1.035 6.035 15 C 0.587 3.413 16 O -0.522 6.522 17 C -0.211 4.211 18 C -0.023 4.023 19 C -0.169 4.169 20 C 0.130 3.870 21 N -0.507 5.507 22 C 0.142 3.858 23 H 0.268 0.732 24 H 0.017 0.983 25 H 0.006 0.994 26 H 0.135 0.865 27 H 0.153 0.847 28 H 0.447 0.553 29 H 0.150 0.850 30 H 0.179 0.821 31 H 0.198 0.802 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.679 -19.625 0.685 25.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.092 0.908 9 C -0.017 4.017 10 C -0.711 4.711 11 S 2.700 3.300 12 O -0.955 6.955 13 O -0.965 6.965 14 N -0.802 5.802 15 C 0.376 3.624 16 O -0.397 6.397 17 C -0.218 4.218 18 C -0.049 4.049 19 C -0.188 4.188 20 C -0.025 4.025 21 N -0.216 5.216 22 C -0.016 4.016 23 H 0.077 0.923 24 H 0.035 0.965 25 H 0.025 0.975 26 H 0.153 0.847 27 H 0.171 0.829 28 H 0.288 0.712 29 H 0.168 0.832 30 H 0.197 0.803 31 H 0.215 0.785 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 14.586 -19.778 0.657 24.584 hybrid contribution 0.199 1.612 0.393 1.671 sum 14.785 -18.167 1.051 23.446 Atomic orbital electron populations 1.70099 1.08002 1.28421 1.50649 1.26107 0.95904 1.03839 0.94242 0.85289 0.78518 0.77540 0.78765 1.19251 1.20740 1.18461 1.21470 0.93936 0.90708 1.51890 0.90788 1.18848 0.93469 0.92626 0.96805 1.30237 1.12892 1.15309 1.12613 1.05414 0.74571 0.76787 0.73246 1.93575 1.71079 1.85463 1.45428 1.93553 1.71706 1.84876 1.46359 1.54823 1.48195 1.49632 1.27517 1.18470 0.80285 0.83309 0.80324 1.90979 1.70357 1.44523 1.33814 1.20724 1.00176 1.00629 1.00256 1.22064 0.90792 0.95611 0.96433 1.22555 0.99472 0.95321 1.01432 1.23760 0.94773 0.96534 0.87483 1.67859 1.05018 1.19617 1.29087 1.23354 0.94089 0.88166 0.96032 0.92280 0.96480 0.97524 0.84651 0.82892 0.71172 0.83197 0.80313 0.78540 0.80016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.98 43.68 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.85 16 9 C 0.02 1.15 4.98 29.85 0.15 1.30 16 10 C -0.58 -22.82 5.83 71.98 0.42 -22.40 16 11 S 2.60 93.90 5.11 -56.49 -0.29 93.61 16 12 O -0.97 -37.33 18.08 -127.65 -2.31 -39.64 16 13 O -0.97 -43.38 17.03 -120.70 -2.06 -45.43 16 14 N -1.04 -25.25 5.56 -175.60 -0.98 -26.23 16 15 C 0.59 15.48 7.52 86.79 0.65 16.13 16 16 O -0.52 -18.02 14.53 12.56 0.18 -17.84 16 17 C -0.21 -4.08 5.89 -19.99 -0.12 -4.20 16 18 C -0.02 -0.37 9.72 22.73 0.22 -0.15 16 19 C -0.17 -1.62 10.10 22.32 0.23 -1.40 16 20 C 0.13 1.31 11.17 84.70 0.95 2.26 16 21 N -0.51 -7.77 10.35 -194.75 -2.01 -9.79 16 22 C 0.14 2.21 10.71 85.02 0.91 3.12 16 23 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 24 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.14 5.26 7.20 -2.39 -0.02 5.24 16 27 H 0.15 4.99 8.14 -2.39 -0.02 4.97 16 28 H 0.45 6.76 6.86 -96.74 -0.66 6.09 16 29 H 0.15 2.45 7.74 -2.91 -0.02 2.43 16 30 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 31 H 0.20 0.53 8.06 -2.91 -0.02 0.51 16 32 H 0.18 1.79 6.42 -2.91 -0.02 1.77 16 Total: -1.00 -82.66 300.09 -0.55 -83.21 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.50 Total: 8.34 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 4.10 Total: -35.26 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -2.71 Total: -92.68 kcal Atomic # 8 Polarization: -98.74 SS G_CDS: -4.18 Total: -102.92 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 93.90 SS G_CDS: -0.29 Total: 93.61 kcal Total: -82.66 -0.55 -83.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181293967.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.792 kcal (2) G-P(sol) polarization free energy of solvation -82.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds