Wall clock time and date at job start Wed Apr 15 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 119.99484 * 2 1 4 4 H 1.48497 * 109.47047 * 269.99827 * 3 2 1 5 5 H 1.48493 * 109.47276 * 30.00260 * 3 2 1 6 6 H 1.48500 * 109.46754 * 150.00349 * 3 2 1 7 7 C 1.38942 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00006 * 0.02562 * 7 2 1 9 9 N 1.37097 * 120.00342 * 179.97438 * 7 2 1 10 10 C 1.34774 * 120.00466 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99520 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00338 * 180.02562 * 10 9 7 13 13 O 1.42898 * 109.47058 * 179.97438 * 12 10 9 14 14 C 1.35958 * 116.99977 * 179.97438 * 13 12 10 15 15 C 1.38950 * 120.06519 * 270.27711 * 14 13 12 16 16 F 1.35101 * 120.04622 * 0.02562 * 15 14 13 17 17 C 1.38293 * 119.90071 * 180.25710 * 15 14 13 18 18 C 1.38293 * 120.02912 * 359.72141 * 17 15 14 19 19 C 1.38220 * 120.13020 * 0.02562 * 18 17 15 20 20 C 1.38220 * 120.09302 * 359.97438 * 19 18 17 21 21 N 1.48020 * 120.01426 * 180.02562 * 20 19 18 22 22 O 1.21803 * 119.99894 * 359.97438 * 21 20 19 23 23 O 1.21799 * 119.99903 * 179.72753 * 21 20 19 24 24 H 0.97005 * 120.00488 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99563 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.46968 * 60.00355 * 12 10 9 27 27 H 1.08997 * 109.46601 * 300.00094 * 12 10 9 28 28 H 1.07995 * 119.98091 * 179.74803 * 17 15 14 29 29 H 1.08001 * 119.93564 * 180.02562 * 18 17 15 30 30 H 1.08003 * 119.95051 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0014 9 7 3.3799 -1.2032 -0.0011 10 6 4.0539 -2.3703 -0.0011 11 8 3.4474 -3.4208 -0.0011 12 6 5.5609 -2.3703 -0.0011 13 8 6.0372 -3.7175 -0.0005 14 6 7.3851 -3.8956 -0.0009 15 6 8.0755 -3.9818 -1.2037 16 9 7.4083 -3.8882 -2.3748 17 6 9.4457 -4.1683 -1.2002 18 6 10.1283 -4.2631 -0.0012 19 6 9.4435 -4.1723 1.1960 20 6 8.0739 -3.9859 1.1986 21 7 7.3424 -3.8884 2.4817 22 8 7.9473 -3.9729 3.5356 23 8 6.1362 -3.7192 2.4837 24 1 -0.4851 0.8400 -0.0004 25 1 3.8648 -0.3631 -0.0007 26 1 5.9241 -1.8565 0.8889 27 1 5.9241 -1.8564 -0.8910 28 1 9.9831 -4.2395 -2.1343 29 1 11.1985 -4.4083 -0.0003 30 1 9.9795 -4.2463 2.1307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185023497.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:54 Heat of formation + Delta-G solvation = -74.237737 kcal Electronic energy + Delta-G solvation = -22017.804043 eV Core-core repulsion = 18118.646576 eV Total energy + Delta-G solvation = -3899.157467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.069 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.39279 -42.25386 -40.10349 -38.66692 -37.45290 -36.38643 -34.01030 -32.19658 -31.74002 -30.88485 -28.28774 -26.70728 -24.47300 -23.21000 -22.85449 -19.74282 -19.65425 -18.76347 -18.63109 -18.18749 -17.53209 -17.29601 -16.77792 -16.34030 -15.91471 -15.60434 -15.21215 -15.02186 -14.32933 -14.03839 -13.28560 -13.22775 -12.94703 -12.79903 -12.50657 -12.31046 -12.07020 -11.53475 -11.25356 -11.13347 -11.03196 -10.62145 -10.24856 -10.04547 -9.99404 -9.61193 -9.38974 -8.60192 -8.22640 -6.32734 -3.85126 -0.52328 0.20436 1.07225 1.21006 2.50188 2.97325 3.01344 3.05195 3.14536 3.47154 3.61356 3.92952 4.07865 4.08398 4.28223 4.29428 4.69143 4.94335 5.02987 5.13856 5.15080 5.18924 5.33467 5.50896 5.68501 5.76832 6.26106 6.94696 7.53136 7.61564 8.07638 8.54784 8.90883 9.36376 9.73042 10.79899 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.004728 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.828561 B = 5920.510055 C = 6438.336657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.045 3.955 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.123 0.877 9 N -0.582 5.582 10 C 0.459 3.541 11 O -0.547 6.547 12 C 0.063 3.937 13 O -0.281 6.281 14 C 0.137 3.863 15 C 0.084 3.916 16 F -0.110 7.110 17 C -0.093 4.093 18 C -0.100 4.100 19 C -0.056 4.056 20 C -0.045 4.045 21 N 0.023 4.977 22 O -0.169 6.169 23 O -0.109 6.109 24 H 0.275 0.725 25 H 0.371 0.629 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.011 -3.646 -1.695 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.159 4.159 3 Si 0.704 3.296 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.432 4.432 8 H 0.140 0.860 9 N -0.223 5.223 10 C 0.243 3.757 11 O -0.427 6.427 12 C -0.015 4.015 13 O -0.195 6.195 14 C 0.088 3.912 15 C 0.063 3.937 16 F -0.088 7.088 17 C -0.112 4.112 18 C -0.118 4.118 19 C -0.075 4.075 20 C -0.129 4.129 21 N 0.545 4.455 22 O -0.379 6.379 23 O -0.334 6.334 24 H 0.085 0.915 25 H 0.204 0.796 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.177 0.823 29 H 0.177 0.823 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 24.591 -4.435 -2.337 25.097 hybrid contribution 0.428 1.559 0.111 1.621 sum 25.019 -2.876 -2.226 25.282 Atomic orbital electron populations 1.69613 1.05594 1.27607 1.48833 1.25006 0.95485 0.97904 0.97483 0.86697 0.79881 0.84111 0.78898 1.19541 1.19953 1.19494 1.19426 0.78606 0.96894 1.48311 0.85957 1.41995 1.07609 1.05490 1.67180 1.18915 0.86390 0.85185 0.85195 1.90620 1.68693 1.30672 1.52731 1.22591 0.96864 0.80431 1.01585 1.86247 1.12513 1.27147 1.93602 1.18566 0.85905 0.97143 0.89537 1.17851 0.90233 1.04506 0.81089 1.91624 1.80428 1.93200 1.43574 1.21595 0.91657 0.96768 1.01155 1.21052 1.01353 0.99645 0.89771 1.21111 0.90363 0.94578 1.01446 1.21513 0.93054 1.14337 0.83976 1.43354 1.01627 0.98691 1.01852 1.94510 1.69797 1.54513 1.19095 1.94773 0.94990 1.49613 1.93990 0.91473 0.79624 0.90783 0.90828 0.82303 0.82279 0.81926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 2 C 0.04 1.23 5.50 -17.47 -0.10 1.13 16 3 Si 0.88 19.29 27.74 -169.99 -4.71 14.58 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.40 6.52 56.52 0.37 -5.04 16 7 C -0.30 -8.70 10.16 -14.94 -0.15 -8.85 16 8 H 0.12 3.99 7.39 -52.48 -0.39 3.60 16 9 N -0.58 -14.19 5.09 -10.96 -0.06 -14.25 16 10 C 0.46 11.04 7.86 -10.99 -0.09 10.95 16 11 O -0.55 -15.72 16.08 -14.37 -0.23 -15.95 16 12 C 0.06 1.14 5.86 36.01 0.21 1.35 16 13 O -0.28 -5.27 7.85 -49.97 -0.39 -5.66 16 14 C 0.14 1.93 5.71 -39.18 -0.22 1.71 16 15 C 0.08 0.93 7.31 -39.30 -0.29 0.64 16 16 F -0.11 -1.42 17.11 2.25 0.04 -1.38 16 17 C -0.09 -0.60 10.02 -39.54 -0.40 -0.99 16 18 C -0.10 -0.51 10.04 -39.57 -0.40 -0.90 16 19 C -0.06 -0.44 9.55 -39.59 -0.38 -0.82 16 20 C -0.04 -0.57 6.86 -79.81 -0.55 -1.12 16 21 N 0.02 0.36 4.45 34.03 0.15 0.52 16 22 O -0.17 -2.57 18.45 -29.46 -0.54 -3.11 16 23 O -0.11 -2.12 16.02 -36.50 -0.58 -2.70 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 26 H 0.07 1.21 7.46 -51.93 -0.39 0.83 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 29 H 0.16 0.20 8.06 -52.49 -0.42 -0.23 16 30 H 0.16 0.97 7.61 -52.48 -0.40 0.57 16 LS Contribution 287.14 15.07 4.33 4.33 Total: -1.00 -35.83 287.14 -5.43 -41.26 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -1.85 Total: 4.13 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.35 Total: 3.09 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.87 Total: -38.58 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -1.75 Total: -27.43 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -35.83 -5.43 -41.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185023497.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.975 kcal (2) G-P(sol) polarization free energy of solvation -35.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds