Wall clock time and date at job start Wed Apr 15 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 119.99484 * 2 1 4 4 H 1.48497 * 109.47047 * 269.99827 * 3 2 1 5 5 H 1.48493 * 109.47276 * 30.00260 * 3 2 1 6 6 H 1.48500 * 109.46754 * 150.00349 * 3 2 1 7 7 C 1.38942 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00006 * 0.02562 * 7 2 1 9 9 N 1.37097 * 120.00342 * 179.97438 * 7 2 1 10 10 C 1.34774 * 120.00466 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99520 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00338 * 180.02562 * 10 9 7 13 13 O 1.42898 * 109.47058 * 179.97438 * 12 10 9 14 14 C 1.35958 * 116.99977 * 179.97438 * 13 12 10 15 15 C 1.38950 * 120.06519 * 270.27711 * 14 13 12 16 16 F 1.35101 * 120.04622 * 0.02562 * 15 14 13 17 17 C 1.38293 * 119.90071 * 180.25710 * 15 14 13 18 18 C 1.38293 * 120.02912 * 359.72141 * 17 15 14 19 19 C 1.38220 * 120.13020 * 0.02562 * 18 17 15 20 20 C 1.38220 * 120.09302 * 359.97438 * 19 18 17 21 21 N 1.48020 * 120.01426 * 180.02562 * 20 19 18 22 22 O 1.21803 * 119.99894 * 359.97438 * 21 20 19 23 23 O 1.21799 * 119.99903 * 179.72753 * 21 20 19 24 24 H 0.97005 * 120.00488 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99563 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.46968 * 60.00355 * 12 10 9 27 27 H 1.08997 * 109.46601 * 300.00094 * 12 10 9 28 28 H 1.07995 * 119.98091 * 179.74803 * 17 15 14 29 29 H 1.08001 * 119.93564 * 180.02562 * 18 17 15 30 30 H 1.08003 * 119.95051 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0014 9 7 3.3799 -1.2032 -0.0011 10 6 4.0539 -2.3703 -0.0011 11 8 3.4474 -3.4208 -0.0011 12 6 5.5609 -2.3703 -0.0011 13 8 6.0372 -3.7175 -0.0005 14 6 7.3851 -3.8956 -0.0009 15 6 8.0755 -3.9818 -1.2037 16 9 7.4083 -3.8882 -2.3748 17 6 9.4457 -4.1683 -1.2002 18 6 10.1283 -4.2631 -0.0012 19 6 9.4435 -4.1723 1.1960 20 6 8.0739 -3.9859 1.1986 21 7 7.3424 -3.8884 2.4817 22 8 7.9473 -3.9729 3.5356 23 8 6.1362 -3.7192 2.4837 24 1 -0.4851 0.8400 -0.0004 25 1 3.8648 -0.3631 -0.0007 26 1 5.9241 -1.8565 0.8889 27 1 5.9241 -1.8564 -0.8910 28 1 9.9831 -4.2395 -2.1343 29 1 11.1985 -4.4083 -0.0003 30 1 9.9795 -4.2463 2.1307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185023497.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:54 Heat of formation + Delta-G solvation = -100.650657 kcal Electronic energy + Delta-G solvation = -22018.949393 eV Core-core repulsion = 18118.646576 eV Total energy + Delta-G solvation = -3900.302817 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.069 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.25798 -43.35503 -41.20325 -40.23792 -38.73930 -37.57283 -36.12580 -33.88986 -32.99685 -31.77715 -29.77762 -27.73307 -26.40844 -24.04418 -23.75265 -21.65606 -20.74849 -20.59309 -19.83664 -19.25434 -18.68944 -18.24830 -17.82945 -17.58204 -17.21697 -16.84516 -16.59377 -16.36832 -15.78202 -15.10052 -15.02735 -14.46471 -14.38689 -14.15676 -13.64959 -13.48424 -13.27740 -13.01332 -12.75958 -12.49037 -12.35140 -12.26057 -12.01942 -11.62548 -11.44488 -10.74845 -10.63743 -10.35759 -10.16447 -8.47154 -6.10643 -1.46900 -0.51245 0.07630 0.24692 1.26648 1.30762 1.41294 1.65851 1.74032 2.05593 2.18768 2.57918 2.97808 3.06167 3.30564 3.40282 3.60590 3.73050 3.79155 3.96302 4.04364 4.26910 4.46583 4.77431 4.79460 5.06042 5.23338 5.44174 5.80709 5.89288 6.38010 6.48362 6.75432 7.23216 7.76901 8.70081 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.004728 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.828561 B = 5920.510055 C = 6438.336657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.964 3.036 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.235 1.235 7 C -0.335 4.335 8 H 0.056 0.944 9 N -0.577 5.577 10 C 0.453 3.547 11 O -0.607 6.607 12 C 0.079 3.921 13 O -0.319 6.319 14 C 0.093 3.907 15 C 0.068 3.932 16 F -0.128 7.128 17 C -0.062 4.062 18 C -0.064 4.064 19 C -0.041 4.041 20 C -0.065 4.065 21 N 0.028 4.972 22 O -0.122 6.122 23 O -0.222 6.222 24 H 0.283 0.717 25 H 0.392 0.608 26 H 0.090 0.910 27 H 0.110 0.890 28 H 0.203 0.797 29 H 0.220 0.780 30 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.404 -2.066 -2.363 31.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.783 3.217 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.159 1.159 7 C -0.463 4.463 8 H 0.075 0.925 9 N -0.219 5.219 10 C 0.240 3.760 11 O -0.491 6.491 12 C 0.002 3.998 13 O -0.235 6.235 14 C 0.046 3.954 15 C 0.047 3.953 16 F -0.106 7.106 17 C -0.080 4.080 18 C -0.082 4.082 19 C -0.059 4.059 20 C -0.149 4.149 21 N 0.543 4.457 22 O -0.351 6.351 23 O -0.421 6.421 24 H 0.092 0.908 25 H 0.228 0.772 26 H 0.108 0.892 27 H 0.128 0.872 28 H 0.220 0.780 29 H 0.237 0.763 30 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 30.806 -2.828 -3.089 31.089 hybrid contribution -1.243 0.868 0.350 1.556 sum 29.563 -1.960 -2.739 29.754 Atomic orbital electron populations 1.69789 1.08093 1.29601 1.49130 1.26114 0.96510 1.02665 0.95487 0.85389 0.79424 0.76565 0.80325 1.17421 1.19355 1.15864 1.18995 0.80709 0.95358 1.51284 0.92540 1.41767 1.06133 1.06760 1.67242 1.20078 0.89243 0.84032 0.82606 1.90574 1.70884 1.32872 1.54792 1.22294 0.91741 0.81869 1.03891 1.86179 1.16191 1.26966 1.94161 1.18947 0.84206 1.00736 0.91486 1.18211 0.91876 1.05815 0.79390 1.91579 1.81243 1.93549 1.44262 1.22190 0.89136 0.92857 1.03815 1.21788 1.03599 0.95348 0.87468 1.21697 0.87874 0.92217 1.04160 1.21732 0.94411 1.17322 0.81440 1.43830 1.01364 0.97466 1.03073 1.94422 1.69156 1.50870 1.20663 1.94812 0.96839 1.55748 1.94685 0.90751 0.77207 0.89176 0.87185 0.77965 0.76342 0.79198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.96 21.66 0.30 -56.40 16 2 C -0.01 -0.46 5.50 84.92 0.47 0.01 16 3 Si 0.96 39.36 27.74 68.60 1.90 41.26 16 4 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.24 -8.24 6.52 99.48 0.65 -7.60 16 7 C -0.33 -20.55 10.16 84.04 0.85 -19.70 16 8 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 9 N -0.58 -29.37 5.09 -306.98 -1.56 -30.93 16 10 C 0.45 23.35 7.86 87.66 0.69 24.04 16 11 O -0.61 -38.40 16.08 15.95 0.26 -38.14 16 12 C 0.08 2.98 5.86 71.24 0.42 3.40 16 13 O -0.32 -12.72 7.85 -64.05 -0.50 -13.22 16 14 C 0.09 2.60 5.71 22.53 0.13 2.73 16 15 C 0.07 1.34 7.31 22.45 0.16 1.50 16 16 F -0.13 -3.17 17.11 44.97 0.77 -2.40 16 17 C -0.06 -0.42 10.02 22.30 0.22 -0.20 16 18 C -0.06 -0.17 10.04 22.28 0.22 0.06 16 19 C -0.04 -0.43 9.55 22.26 0.21 -0.22 16 20 C -0.06 -1.55 6.86 36.46 0.25 -1.30 16 21 N 0.03 0.89 4.45 -46.25 -0.21 0.68 16 22 O -0.12 -3.56 18.45 18.88 0.35 -3.21 16 23 O -0.22 -9.40 16.02 25.61 0.41 -8.99 16 24 H 0.28 15.67 8.31 -92.70 -0.77 14.90 16 25 H 0.39 16.31 5.76 -92.71 -0.53 15.77 16 26 H 0.09 3.06 7.46 -2.39 -0.02 3.04 16 27 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 28 H 0.20 -0.27 8.06 -2.91 -0.02 -0.29 16 29 H 0.22 -1.76 8.06 -2.91 -0.02 -1.79 16 30 H 0.19 1.04 7.61 -2.91 -0.02 1.02 16 Total: -1.00 -93.44 287.14 5.98 -87.46 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.63 Total: 13.55 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 3.63 Total: 10.33 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -1.47 Total: -86.65 kcal Atomic # 8 Polarization: -64.07 SS G_CDS: 0.51 Total: -63.56 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.77 Total: -2.40 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.90 Total: 41.26 kcal Total: -93.44 5.98 -87.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185023497.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.190 kcal (2) G-P(sol) polarization free energy of solvation -93.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds