Wall clock time and date at job start Wed Apr 15 2020 11:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42896 * 112.95056 * 48.40423 * 9 7 2 11 11 C 1.53948 * 113.74115 * 276.66959 * 9 7 2 12 12 N 1.47581 * 86.11831 * 222.05373 * 11 9 7 13 13 S 1.65604 * 134.48814 * 204.64003 * 12 11 9 14 14 O 1.42097 * 106.40074 * 23.54130 * 13 12 11 15 15 O 1.42100 * 106.39798 * 156.45966 * 13 12 11 16 16 C 1.76197 * 107.22038 * 269.99900 * 13 12 11 17 17 C 1.38665 * 120.41931 * 89.99831 * 16 13 12 18 18 C 1.38629 * 118.42252 * 180.02562 * 17 16 13 19 19 C 1.38236 * 119.15820 * 0.02562 * 18 17 16 20 20 N 1.31849 * 120.76374 * 0.02562 * 19 18 17 21 21 C 1.31889 * 121.72366 * 359.70525 * 20 19 18 22 22 C 1.47575 * 91.01727 * 24.63778 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96697 * 113.99744 * 309.67215 * 10 9 7 25 25 H 1.09002 * 113.76590 * 336.35388 * 11 9 7 26 26 H 1.08998 * 113.77136 * 107.74611 * 11 9 7 27 27 H 1.08001 * 120.79282 * 359.97438 * 17 16 13 28 28 H 1.07999 * 120.42225 * 180.02562 * 18 17 16 29 29 H 1.07998 * 119.61178 * 179.97438 * 19 18 17 30 30 H 1.08007 * 119.61555 * 180.31384 * 21 20 19 31 31 H 1.08992 * 113.77450 * 221.06110 * 22 12 11 32 32 H 1.09008 * 113.87093 * 89.67321 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3212 0.9849 11 6 4.1319 -1.0294 -1.3993 12 7 5.0923 -2.0710 -0.9861 13 16 6.6306 -2.4787 -1.4444 14 8 7.2051 -1.3074 -2.0075 15 8 7.2046 -3.1757 -0.3472 16 6 6.4918 -3.6454 -2.7574 17 6 6.4367 -3.2165 -4.0749 18 6 6.3270 -4.1700 -5.0752 19 6 6.2760 -5.5072 -4.7284 20 7 6.3300 -5.8786 -3.4645 21 6 6.4396 -4.9996 -2.4874 22 6 4.1314 -2.6033 -0.0006 23 1 -0.4850 0.8401 0.0004 24 1 3.7023 0.5737 0.9692 25 1 3.4725 -1.3369 -2.2110 26 1 4.5871 -0.0532 -1.5660 27 1 6.4774 -2.1645 -4.3160 28 1 6.2819 -3.8719 -6.1123 29 1 6.1901 -6.2561 -5.5017 30 1 6.4860 -5.3420 -1.4641 31 1 4.5862 -2.8836 0.9494 32 1 3.4712 -3.3734 -0.3997 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331888564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:56 Heat of formation + Delta-G solvation = -27.508987 kcal Electronic energy + Delta-G solvation = -20485.939220 eV Core-core repulsion = 17155.021240 eV Total energy + Delta-G solvation = -3330.917980 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24940 -38.98537 -37.02301 -35.65754 -34.54845 -32.84237 -32.55732 -31.65780 -28.21071 -25.73485 -24.73929 -24.11799 -23.88822 -19.97485 -18.95400 -17.91668 -17.61141 -17.07691 -16.77495 -16.60722 -16.32822 -15.26486 -14.64262 -14.35137 -14.12421 -13.91893 -13.64015 -13.42975 -13.14071 -12.81650 -12.61956 -12.35617 -11.93217 -11.88337 -11.85612 -11.28535 -11.16695 -10.95419 -10.56498 -10.40082 -10.14978 -9.79400 -9.68366 -9.39029 -9.11604 -8.82059 -8.43109 -6.44044 -4.50029 0.31434 0.63211 0.94805 2.99944 3.02895 3.07543 3.15914 3.43961 3.94880 4.02488 4.14762 4.20962 4.52760 4.64534 4.65941 4.85301 4.97196 5.06588 5.35445 5.59997 5.61812 5.63108 5.71100 6.04650 6.08621 6.29231 6.30511 6.38873 6.51616 7.03436 7.25921 7.54814 8.00917 8.49754 8.59203 9.13783 10.67932 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.025391 B = 0.005585 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.481758 B = 5011.999360 C = 5309.015398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.081 3.919 3 Si 0.854 3.146 4 H -0.265 1.265 5 H -0.254 1.254 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.092 0.908 9 C 0.203 3.797 10 O -0.552 6.552 11 C 0.088 3.912 12 N -1.024 6.024 13 S 2.705 3.295 14 O -0.958 6.958 15 O -0.955 6.955 16 C -0.734 4.734 17 C 0.024 3.976 18 C -0.195 4.195 19 C 0.144 3.856 20 N -0.498 5.498 21 C 0.199 3.801 22 C 0.144 3.856 23 H 0.271 0.729 24 H 0.352 0.648 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.083 0.917 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.449 -5.793 -8.900 14.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.125 4.125 3 Si 0.683 3.317 4 H -0.191 1.191 5 H -0.179 1.179 6 H -0.210 1.210 7 C -0.574 4.574 8 H 0.110 0.890 9 C 0.159 3.841 10 O -0.363 6.363 11 C -0.037 4.037 12 N -0.865 5.865 13 S 2.795 3.205 14 O -0.948 6.948 15 O -0.945 6.945 16 C -0.819 4.819 17 C -0.003 4.003 18 C -0.216 4.216 19 C -0.012 4.012 20 N -0.207 5.207 21 C 0.040 3.960 22 C 0.020 3.980 23 H 0.081 0.919 24 H 0.205 0.795 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.168 0.832 28 H 0.162 0.838 29 H 0.180 0.820 30 H 0.190 0.810 31 H 0.102 0.898 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.585 -6.885 -8.320 15.121 hybrid contribution -0.256 1.784 -1.162 2.145 sum 10.329 -5.100 -9.482 14.920 Atomic orbital electron populations 1.69855 1.06080 1.27658 1.47558 1.25004 0.94906 0.99029 0.93562 0.87397 0.80550 0.84376 0.79395 1.19141 1.17902 1.20988 1.21270 0.87643 0.95688 1.52818 0.88996 1.20540 0.92230 0.87496 0.83824 1.86462 1.67587 1.24295 1.57986 1.24242 0.87805 0.89465 1.02222 1.60203 1.30755 1.44387 1.51175 1.01724 0.72654 0.73134 0.73030 1.93545 1.75287 1.46234 1.79734 1.93554 1.75296 1.75185 1.50508 1.32504 1.18348 1.14290 1.16793 1.21389 0.86943 1.01137 0.90784 1.22266 1.03746 0.94557 1.01006 1.23140 0.89484 0.94967 0.93605 1.67848 1.13380 1.38694 1.00791 1.22628 0.86554 0.87326 0.99487 1.22984 0.87231 0.97467 0.90359 0.91881 0.79545 0.89028 0.90755 0.83174 0.83777 0.82005 0.81047 0.89842 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.01 13.96 55.43 0.77 -23.23 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.85 18.61 24.34 -169.99 -4.14 14.47 16 4 H -0.27 -5.64 7.06 56.52 0.40 -5.24 16 5 H -0.25 -5.20 5.28 56.52 0.30 -4.91 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.54 -13.32 9.20 -34.44 -0.32 -13.64 16 8 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.20 4.44 1.06 -90.84 -0.10 4.34 16 10 O -0.55 -12.71 13.32 -35.23 -0.47 -13.18 16 11 C 0.09 1.71 7.56 -2.97 -0.02 1.69 16 12 N -1.02 -18.55 4.11 -118.70 -0.49 -19.04 16 13 S 2.70 45.73 6.25 -107.50 -0.67 45.06 16 14 O -0.96 -18.05 17.33 -57.17 -0.99 -19.04 16 15 O -0.95 -17.80 17.28 -57.17 -0.99 -18.79 16 16 C -0.73 -10.45 5.99 -39.44 -0.24 -10.69 16 17 C 0.02 0.30 9.65 -39.28 -0.38 -0.08 16 18 C -0.20 -1.96 10.11 -39.44 -0.40 -2.35 16 19 C 0.14 1.51 11.18 -17.54 -0.20 1.32 16 20 N -0.50 -6.61 10.36 -13.25 -0.14 -6.75 16 21 C 0.20 2.75 10.69 -17.55 -0.19 2.56 16 22 C 0.14 2.68 8.36 -2.97 -0.02 2.66 16 23 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.35 7.77 3.31 45.56 0.15 7.93 16 25 H 0.09 1.63 8.09 -51.93 -0.42 1.21 16 26 H 0.07 1.44 6.98 -51.93 -0.36 1.07 16 27 H 0.15 1.66 7.71 -52.49 -0.40 1.25 16 28 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 30 H 0.17 2.15 7.63 -52.48 -0.40 1.75 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.09 1.54 8.09 -51.92 -0.42 1.12 16 LS Contribution 288.11 15.07 4.34 4.34 Total: -1.00 -31.59 288.11 -7.51 -39.10 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -2.79 Total: 9.28 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -1.96 Total: -12.22 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.15 Total: -49.02 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -2.45 Total: -51.01 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.14 Total: 14.47 kcal Atomic # 16 Polarization: 45.73 SS G_CDS: -0.67 Total: 45.06 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.59 -7.51 -39.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331888564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.588 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds