Wall clock time and date at job start Wed Apr 15 2020 11:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42896 * 112.95056 * 48.40423 * 9 7 2 11 11 C 1.53948 * 113.74115 * 276.66959 * 9 7 2 12 12 N 1.47581 * 86.11831 * 222.05373 * 11 9 7 13 13 S 1.65604 * 134.48814 * 204.64003 * 12 11 9 14 14 O 1.42097 * 106.40074 * 23.54130 * 13 12 11 15 15 O 1.42100 * 106.39798 * 156.45966 * 13 12 11 16 16 C 1.76197 * 107.22038 * 269.99900 * 13 12 11 17 17 C 1.38665 * 120.41931 * 89.99831 * 16 13 12 18 18 C 1.38629 * 118.42252 * 180.02562 * 17 16 13 19 19 C 1.38236 * 119.15820 * 0.02562 * 18 17 16 20 20 N 1.31849 * 120.76374 * 0.02562 * 19 18 17 21 21 C 1.31889 * 121.72366 * 359.70525 * 20 19 18 22 22 C 1.47575 * 91.01727 * 24.63778 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96697 * 113.99744 * 309.67215 * 10 9 7 25 25 H 1.09002 * 113.76590 * 336.35388 * 11 9 7 26 26 H 1.08998 * 113.77136 * 107.74611 * 11 9 7 27 27 H 1.08001 * 120.79282 * 359.97438 * 17 16 13 28 28 H 1.07999 * 120.42225 * 180.02562 * 18 17 16 29 29 H 1.07998 * 119.61178 * 179.97438 * 19 18 17 30 30 H 1.08007 * 119.61555 * 180.31384 * 21 20 19 31 31 H 1.08992 * 113.77450 * 221.06110 * 22 12 11 32 32 H 1.09008 * 113.87093 * 89.67321 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3212 0.9849 11 6 4.1319 -1.0294 -1.3993 12 7 5.0923 -2.0710 -0.9861 13 16 6.6306 -2.4787 -1.4444 14 8 7.2051 -1.3074 -2.0075 15 8 7.2046 -3.1757 -0.3472 16 6 6.4918 -3.6454 -2.7574 17 6 6.4367 -3.2165 -4.0749 18 6 6.3270 -4.1700 -5.0752 19 6 6.2760 -5.5072 -4.7284 20 7 6.3300 -5.8786 -3.4645 21 6 6.4396 -4.9996 -2.4874 22 6 4.1314 -2.6033 -0.0006 23 1 -0.4850 0.8401 0.0004 24 1 3.7023 0.5737 0.9692 25 1 3.4725 -1.3369 -2.2110 26 1 4.5871 -0.0532 -1.5660 27 1 6.4774 -2.1645 -4.3160 28 1 6.2819 -3.8719 -6.1123 29 1 6.1901 -6.2561 -5.5017 30 1 6.4860 -5.3420 -1.4641 31 1 4.5862 -2.8836 0.9494 32 1 3.4712 -3.3734 -0.3997 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331888564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:56 Heat of formation + Delta-G solvation = -54.507705 kcal Electronic energy + Delta-G solvation = -20487.109972 eV Core-core repulsion = 17155.021240 eV Total energy + Delta-G solvation = -3332.088732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.16410 -40.59126 -38.43363 -37.07623 -36.25476 -34.50501 -33.78173 -32.56712 -29.92405 -27.25541 -26.45878 -25.09790 -24.81340 -21.64834 -20.24068 -19.43234 -19.07066 -18.45369 -18.16747 -17.76195 -17.68015 -16.61060 -15.84654 -15.78851 -15.42026 -15.23150 -15.11742 -14.79064 -14.43867 -14.35571 -13.95779 -13.74811 -13.48673 -13.36584 -13.28506 -12.78326 -12.66938 -12.39119 -12.31319 -11.92605 -11.40737 -11.11140 -10.94686 -10.75206 -10.56503 -10.53623 -9.97458 -8.39972 -6.50081 -0.86665 -0.46410 0.04726 1.27034 1.31059 1.40843 1.76389 2.19673 2.45821 2.68525 2.80589 2.96098 3.26834 3.31974 3.68824 3.75876 3.87014 3.97397 4.04522 4.23423 4.52895 4.55346 4.60437 4.72740 4.77294 4.88290 4.94390 4.96385 5.28252 5.45163 5.62549 6.07759 6.58058 6.64728 6.72848 7.17703 8.75108 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.025391 B = 0.005585 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.481758 B = 5011.999360 C = 5309.015398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.030 3.970 3 Si 0.907 3.093 4 H -0.257 1.257 5 H -0.233 1.233 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.181 3.819 10 O -0.561 6.561 11 C 0.095 3.905 12 N -1.029 6.029 13 S 2.723 3.277 14 O -0.979 6.979 15 O -0.978 6.978 16 C -0.740 4.740 17 C 0.009 3.991 18 C -0.182 4.182 19 C 0.145 3.855 20 N -0.517 5.517 21 C 0.186 3.814 22 C 0.148 3.852 23 H 0.272 0.728 24 H 0.354 0.646 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.161 0.839 28 H 0.186 0.814 29 H 0.203 0.797 30 H 0.174 0.826 31 H 0.087 0.913 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.859 -6.140 -11.051 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.171 4.171 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.157 1.157 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.138 3.862 10 O -0.373 6.373 11 C -0.031 4.031 12 N -0.868 5.868 13 S 2.817 3.183 14 O -0.970 6.970 15 O -0.968 6.968 16 C -0.830 4.830 17 C -0.018 4.018 18 C -0.202 4.202 19 C -0.010 4.010 20 N -0.227 5.227 21 C 0.027 3.973 22 C 0.023 3.977 23 H 0.082 0.918 24 H 0.207 0.793 25 H 0.125 0.875 26 H 0.095 0.905 27 H 0.179 0.821 28 H 0.203 0.797 29 H 0.220 0.780 30 H 0.191 0.809 31 H 0.105 0.895 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.008 -7.207 -10.430 17.462 hybrid contribution -0.678 1.724 -0.595 1.945 sum 11.330 -5.483 -11.025 16.733 Atomic orbital electron populations 1.69986 1.07819 1.28597 1.49707 1.25736 0.95506 1.02535 0.93301 0.86515 0.80137 0.80097 0.80025 1.18276 1.15747 1.20941 1.21428 0.89525 0.94640 1.51949 0.91820 1.20753 0.90708 0.89442 0.85257 1.86459 1.67505 1.24615 1.58742 1.24055 0.88110 0.90163 1.00764 1.60015 1.30718 1.44517 1.51583 1.00812 0.71588 0.72891 0.73019 1.93511 1.75505 1.47864 1.80073 1.93521 1.75516 1.75482 1.52315 1.31918 1.21167 1.13419 1.16497 1.21726 0.87037 1.02482 0.90520 1.22720 1.01348 0.93717 1.02408 1.23909 0.87343 0.96417 0.93365 1.67906 1.14151 1.38746 1.01916 1.22734 0.87039 0.87336 1.00164 1.22979 0.87454 0.96130 0.91100 0.91846 0.79341 0.87532 0.90503 0.82116 0.79703 0.78034 0.80921 0.89481 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.78 13.96 21.45 0.30 -51.49 16 2 C 0.03 1.57 5.47 84.66 0.46 2.03 16 3 Si 0.91 37.98 24.34 68.60 1.67 39.65 16 4 H -0.26 -10.37 7.06 99.48 0.70 -9.67 16 5 H -0.23 -8.92 5.28 99.48 0.53 -8.40 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.54 -27.04 9.20 25.60 0.24 -26.80 16 8 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 9 C 0.18 7.84 1.06 -10.88 -0.01 7.83 16 10 O -0.56 -25.36 13.32 -148.98 -1.98 -27.35 16 11 C 0.09 3.53 7.56 86.48 0.65 4.19 16 12 N -1.03 -36.10 4.11 -533.26 -2.19 -38.29 16 13 S 2.72 89.40 6.25 -56.49 -0.35 89.05 16 14 O -0.98 -35.76 17.33 -128.00 -2.22 -37.98 16 15 O -0.98 -36.04 17.28 -128.00 -2.21 -38.25 16 16 C -0.74 -19.83 5.99 22.36 0.13 -19.69 16 17 C 0.01 0.20 9.65 22.47 0.22 0.41 16 18 C -0.18 -2.86 10.11 22.36 0.23 -2.64 16 19 C 0.15 2.47 11.18 84.69 0.95 3.42 16 20 N -0.52 -12.47 10.36 -195.83 -2.03 -14.50 16 21 C 0.19 4.88 10.69 84.67 0.90 5.79 16 22 C 0.15 5.42 8.36 86.48 0.72 6.14 16 23 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 24 H 0.35 15.15 3.31 -74.06 -0.25 14.91 16 25 H 0.11 3.62 8.09 -2.39 -0.02 3.60 16 26 H 0.08 2.82 6.98 -2.39 -0.02 2.80 16 27 H 0.16 3.10 7.71 -2.91 -0.02 3.08 16 28 H 0.19 1.37 8.06 -2.91 -0.02 1.34 16 29 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.17 4.26 7.63 -2.91 -0.02 4.23 16 31 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.11 3.61 8.09 -2.38 -0.02 3.59 16 Total: -1.00 -68.56 288.11 -3.80 -72.36 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.73 Total: 26.12 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 4.49 Total: -19.32 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -3.92 Total: -104.28 kcal Atomic # 8 Polarization: -97.17 SS G_CDS: -6.41 Total: -103.58 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 1.67 Total: 39.65 kcal Atomic # 16 Polarization: 89.40 SS G_CDS: -0.35 Total: 89.05 kcal Total: -68.56 -3.80 -72.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331888564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.850 kcal (2) G-P(sol) polarization free energy of solvation -68.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds