Wall clock time and date at job start Wed Apr 15 2020 11:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99657 * 2 1 4 4 H 1.48504 * 109.46640 * 239.99632 * 3 2 1 5 5 H 1.48494 * 109.47455 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46997 * 120.00330 * 3 2 1 7 7 C 1.37878 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00230 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99754 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00238 * 180.02562 * 10 9 7 12 12 O 1.21559 * 120.00051 * 359.97438 * 11 10 9 13 13 C 1.47850 * 119.99971 * 179.97438 * 11 10 9 14 14 C 1.39577 * 120.14126 * 180.02562 * 13 11 10 15 15 C 1.37968 * 119.85069 * 180.02562 * 14 13 11 16 16 C 1.38352 * 120.14476 * 0.02562 * 15 14 13 17 17 S 1.76193 * 119.85417 * 179.97438 * 16 15 14 18 18 N 1.65606 * 107.21910 * 90.00257 * 17 16 15 19 19 O 1.42105 * 106.40403 * 203.54146 * 17 16 15 20 20 O 1.42098 * 106.40145 * 336.46075 * 17 16 15 21 21 C 1.38360 * 120.29202 * 0.23659 * 16 15 14 22 22 C 1.37963 * 120.14823 * 359.48539 * 21 16 15 23 23 H 0.97003 * 120.00327 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47052 * 60.00688 * 9 7 2 25 25 H 1.09002 * 109.47814 * 299.99938 * 9 7 2 26 26 H 0.97001 * 119.99944 * 359.97438 * 10 9 7 27 27 H 1.08002 * 120.07925 * 0.02562 * 14 13 11 28 28 H 1.07995 * 119.92491 * 180.02562 * 15 14 13 29 29 H 0.97003 * 119.99610 * 270.00212 * 18 17 16 30 30 H 0.96993 * 120.00139 * 89.99542 * 18 17 16 31 31 H 1.08000 * 119.93097 * 179.74759 * 21 16 15 32 32 H 1.07991 * 120.07565 * 180.25393 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7538 -4.8833 0.0033 12 8 0.5587 -5.1055 0.0035 13 6 2.7146 -6.0071 0.0037 14 6 2.2526 -7.3242 0.0038 15 6 3.1545 -8.3682 0.0048 16 6 4.5141 -8.1119 0.0062 17 16 5.6591 -9.4511 0.0080 18 7 5.9795 -9.8244 -1.5733 19 8 6.8692 -8.9438 0.5536 20 8 4.9694 -10.5680 0.5522 21 6 4.9786 -6.8087 0.0115 22 6 4.0875 -5.7554 0.0049 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8881 25 1 0.6247 -2.5564 0.8919 26 1 3.1567 -3.4354 0.0022 27 1 1.1916 -7.5256 0.0032 28 1 2.7984 -9.3878 0.0044 29 1 5.4347 -10.4796 -2.0368 30 1 6.7117 -9.3878 -2.0359 31 1 6.0411 -6.6153 0.0167 32 1 4.4514 -4.7387 0.0049 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350870606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:58 Heat of formation + Delta-G solvation = -92.750166 kcal Electronic energy + Delta-G solvation = -19142.558554 eV Core-core repulsion = 15808.811505 eV Total energy + Delta-G solvation = -3333.747050 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.97022 -38.06994 -37.52417 -36.16372 -34.45469 -33.59096 -32.64570 -31.51920 -31.20618 -27.46206 -24.52288 -23.07792 -22.29532 -20.27564 -19.75204 -18.58825 -17.82335 -17.77621 -17.27221 -16.04154 -15.92633 -15.11471 -15.03017 -14.64809 -14.63834 -14.29379 -13.82449 -13.59023 -13.08898 -12.77122 -12.55004 -12.41002 -12.33078 -12.07257 -11.93785 -11.45808 -11.40077 -11.08135 -10.94424 -10.73239 -10.40395 -9.53166 -9.52763 -9.40821 -9.27415 -8.83906 -8.06727 -6.24815 -4.32911 0.05320 0.35784 1.10008 2.68332 3.03645 3.20407 3.25460 3.26746 3.48294 3.77329 3.85391 4.01287 4.27839 4.54562 4.63595 4.98695 5.10336 5.11501 5.23266 5.40683 5.57523 5.67492 5.81953 5.91142 6.16005 6.55807 6.68817 7.15427 7.20423 7.38106 7.53382 7.85663 8.40483 8.62116 8.85648 9.33680 10.85245 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.035081 B = 0.003201 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.954445 B = 8746.044081 C = 9355.856827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.699 5.699 11 C 0.530 3.470 12 O -0.543 6.543 13 C -0.060 4.060 14 C -0.089 4.089 15 C -0.030 4.030 16 C -0.674 4.674 17 S 2.708 3.292 18 N -1.243 6.243 19 O -0.957 6.957 20 O -0.958 6.958 21 C -0.028 4.028 22 C -0.112 4.112 23 H 0.268 0.732 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.392 0.608 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.421 0.579 30 H 0.421 0.579 31 H 0.145 0.855 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.605 -17.826 -3.952 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.347 5.347 11 C 0.315 3.685 12 O -0.422 6.422 13 C -0.064 4.064 14 C -0.108 4.108 15 C -0.049 4.049 16 C -0.761 4.761 17 S 2.794 3.206 18 N -0.915 5.915 19 O -0.947 6.947 20 O -0.948 6.948 21 C -0.048 4.048 22 C -0.132 4.132 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.226 0.774 27 H 0.164 0.836 28 H 0.162 0.838 29 H 0.249 0.751 30 H 0.249 0.751 31 H 0.163 0.837 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.866 -18.150 -3.029 21.895 hybrid contribution 0.395 1.638 -0.723 1.834 sum 12.260 -16.511 -3.752 20.905 Atomic orbital electron populations 1.69959 1.06141 1.27615 1.48416 1.24950 0.94940 0.99522 0.94494 0.86439 0.79409 0.82116 0.78753 1.20008 1.20998 1.19979 1.21150 0.93250 0.90319 1.53908 0.91855 1.19218 0.88219 0.81663 0.98117 1.46493 1.11516 1.05922 1.70724 1.18261 0.88005 0.83390 0.78882 1.90760 1.15933 1.84785 1.50762 1.20744 0.94034 0.95021 0.96606 1.21458 1.01245 0.90977 0.97148 1.20892 0.90900 1.00162 0.92953 1.31098 1.11291 1.15561 1.18138 1.01450 0.73413 0.73412 0.72361 1.53347 1.46239 1.56932 1.34952 1.93613 1.43815 1.81334 1.75983 1.93610 1.75578 1.49572 1.76037 1.20853 1.00486 0.90610 0.92802 1.21562 0.92285 1.00131 0.99196 0.92248 0.95095 0.95095 0.77419 0.83599 0.83755 0.75082 0.75068 0.83731 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.52 13.29 55.43 0.74 -24.78 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.55 -14.46 9.28 -34.44 -0.32 -14.78 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.39 5.43 -5.19 -0.03 6.36 16 10 N -0.70 -14.29 5.50 -62.43 -0.34 -14.64 16 11 C 0.53 10.50 7.77 -12.33 -0.10 10.40 16 12 O -0.54 -12.75 16.35 5.31 0.09 -12.67 16 13 C -0.06 -0.92 5.87 -104.97 -0.62 -1.54 16 14 C -0.09 -1.19 9.60 -39.18 -0.38 -1.57 16 15 C -0.03 -0.32 9.50 -39.64 -0.38 -0.70 16 16 C -0.67 -6.80 5.98 -39.49 -0.24 -7.04 16 17 S 2.71 22.91 6.28 -107.50 -0.67 22.23 16 18 N -1.24 -5.42 9.52 60.35 0.57 -4.85 16 19 O -0.96 -10.82 17.26 -57.17 -0.99 -11.81 16 20 O -0.96 -10.86 17.27 -57.17 -0.99 -11.84 16 21 C -0.03 -0.30 9.50 -39.64 -0.38 -0.67 16 22 C -0.11 -1.39 9.54 -39.18 -0.37 -1.76 16 23 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.39 6.73 6.36 -40.82 -0.26 6.48 16 27 H 0.15 1.94 7.65 -52.49 -0.40 1.54 16 28 H 0.14 1.21 7.60 -52.49 -0.40 0.82 16 29 H 0.42 1.10 8.96 -34.47 -0.31 0.79 16 30 H 0.42 1.10 8.96 -34.47 -0.31 0.79 16 31 H 0.14 1.17 7.60 -52.49 -0.40 0.77 16 32 H 0.14 1.49 6.41 -52.49 -0.34 1.15 16 LS Contribution 299.99 15.07 4.52 4.52 Total: -1.00 -36.27 299.99 -7.78 -44.05 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -2.79 Total: 4.05 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -2.90 Total: -9.62 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.97 Total: -44.27 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -1.89 Total: -36.32 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 22.91 SS G_CDS: -0.67 Total: 22.23 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -36.27 -7.78 -44.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350870606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.699 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds