Wall clock time and date at job start Wed Apr 15 2020 11:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99657 * 2 1 4 4 H 1.48504 * 109.46640 * 239.99632 * 3 2 1 5 5 H 1.48494 * 109.47455 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46997 * 120.00330 * 3 2 1 7 7 C 1.37878 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00230 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99754 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00238 * 180.02562 * 10 9 7 12 12 O 1.21559 * 120.00051 * 359.97438 * 11 10 9 13 13 C 1.47850 * 119.99971 * 179.97438 * 11 10 9 14 14 C 1.39577 * 120.14126 * 180.02562 * 13 11 10 15 15 C 1.37968 * 119.85069 * 180.02562 * 14 13 11 16 16 C 1.38352 * 120.14476 * 0.02562 * 15 14 13 17 17 S 1.76193 * 119.85417 * 179.97438 * 16 15 14 18 18 N 1.65606 * 107.21910 * 90.00257 * 17 16 15 19 19 O 1.42105 * 106.40403 * 203.54146 * 17 16 15 20 20 O 1.42098 * 106.40145 * 336.46075 * 17 16 15 21 21 C 1.38360 * 120.29202 * 0.23659 * 16 15 14 22 22 C 1.37963 * 120.14823 * 359.48539 * 21 16 15 23 23 H 0.97003 * 120.00327 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47052 * 60.00688 * 9 7 2 25 25 H 1.09002 * 109.47814 * 299.99938 * 9 7 2 26 26 H 0.97001 * 119.99944 * 359.97438 * 10 9 7 27 27 H 1.08002 * 120.07925 * 0.02562 * 14 13 11 28 28 H 1.07995 * 119.92491 * 180.02562 * 15 14 13 29 29 H 0.97003 * 119.99610 * 270.00212 * 18 17 16 30 30 H 0.96993 * 120.00139 * 89.99542 * 18 17 16 31 31 H 1.08000 * 119.93097 * 179.74759 * 21 16 15 32 32 H 1.07991 * 120.07565 * 180.25393 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7538 -4.8833 0.0033 12 8 0.5587 -5.1055 0.0035 13 6 2.7146 -6.0071 0.0037 14 6 2.2526 -7.3242 0.0038 15 6 3.1545 -8.3682 0.0048 16 6 4.5141 -8.1119 0.0062 17 16 5.6591 -9.4511 0.0080 18 7 5.9795 -9.8244 -1.5733 19 8 6.8692 -8.9438 0.5536 20 8 4.9694 -10.5680 0.5522 21 6 4.9786 -6.8087 0.0115 22 6 4.0875 -5.7554 0.0049 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8881 25 1 0.6247 -2.5564 0.8919 26 1 3.1567 -3.4354 0.0022 27 1 1.1916 -7.5256 0.0032 28 1 2.7984 -9.3878 0.0044 29 1 5.4347 -10.4796 -2.0368 30 1 6.7117 -9.3878 -2.0359 31 1 6.0411 -6.6153 0.0167 32 1 4.4514 -4.7387 0.0049 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350870606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:58 Heat of formation + Delta-G solvation = -123.942391 kcal Electronic energy + Delta-G solvation = -19143.911151 eV Core-core repulsion = 15808.811505 eV Total energy + Delta-G solvation = -3335.099646 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.28534 -39.39769 -38.32757 -36.96871 -36.33274 -34.54334 -34.04957 -32.70000 -32.18510 -29.37678 -25.94642 -24.39651 -23.66606 -21.75049 -20.55044 -19.77002 -18.92760 -18.28825 -18.14800 -17.78090 -17.32786 -16.55879 -16.32524 -16.09665 -15.83376 -15.41986 -15.06306 -14.63510 -14.34323 -14.19688 -13.98009 -13.75462 -13.26566 -13.23648 -13.15539 -12.98542 -12.69964 -12.36895 -12.28981 -12.20998 -11.56121 -11.33441 -11.04710 -10.83735 -10.59204 -10.19658 -9.95981 -8.32124 -6.49568 -0.81077 -0.51684 0.17033 1.42969 1.46789 1.53759 1.55126 2.18538 2.27601 2.43056 2.56016 2.84761 3.03213 3.25465 3.60009 3.72095 3.79930 4.15902 4.28065 4.45672 4.80858 4.86935 4.88675 5.03533 5.16414 5.17608 5.29094 5.35425 5.56947 5.64137 5.78206 6.42236 6.58061 6.70718 7.14501 7.28993 8.79863 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.035081 B = 0.003201 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.954445 B = 8746.044081 C = 9355.856827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.560 4.560 8 H 0.086 0.914 9 C 0.264 3.736 10 N -0.694 5.694 11 C 0.530 3.470 12 O -0.591 6.591 13 C -0.088 4.088 14 C -0.098 4.098 15 C -0.027 4.027 16 C -0.665 4.665 17 S 2.740 3.260 18 N -1.223 6.223 19 O -0.980 6.980 20 O -0.983 6.983 21 C -0.025 4.025 22 C -0.109 4.109 23 H 0.270 0.730 24 H -0.006 1.006 25 H -0.008 1.008 26 H 0.409 0.591 27 H 0.137 0.863 28 H 0.170 0.830 29 H 0.432 0.568 30 H 0.433 0.567 31 H 0.176 0.824 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.011 -18.529 -4.479 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.598 4.598 8 H 0.104 0.896 9 C 0.142 3.858 10 N -0.344 5.344 11 C 0.318 3.682 12 O -0.473 6.473 13 C -0.091 4.091 14 C -0.118 4.118 15 C -0.046 4.046 16 C -0.750 4.750 17 S 2.823 3.177 18 N -0.900 5.900 19 O -0.970 6.970 20 O -0.973 6.973 21 C -0.044 4.044 22 C -0.128 4.128 23 H 0.079 0.921 24 H 0.011 0.989 25 H 0.010 0.990 26 H 0.247 0.753 27 H 0.155 0.845 28 H 0.188 0.812 29 H 0.264 0.736 30 H 0.265 0.735 31 H 0.193 0.807 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 15.313 -18.868 -3.568 24.561 hybrid contribution -0.623 1.684 -0.593 1.891 sum 14.689 -17.185 -4.162 22.987 Atomic orbital electron populations 1.70127 1.08306 1.28782 1.49627 1.26069 0.95777 1.03938 0.93675 0.85185 0.77903 0.76440 0.79575 1.18491 1.21146 1.18640 1.21565 0.94400 0.90361 1.53436 0.89580 1.18660 0.88611 0.83938 0.94586 1.46171 1.11621 1.05249 1.71319 1.18991 0.88291 0.84059 0.76878 1.90720 1.18399 1.85521 1.52670 1.20348 0.94240 0.93588 1.00910 1.21508 1.01553 0.91085 0.97670 1.21137 0.90886 1.00552 0.91985 1.31539 1.11353 1.16349 1.15773 1.00460 0.72166 0.72186 0.72846 1.52936 1.46573 1.56859 1.33675 1.93587 1.44489 1.81630 1.77263 1.93582 1.76082 1.50242 1.77361 1.21219 1.01678 0.90044 0.91487 1.21732 0.91028 1.01691 0.98369 0.92137 0.98850 0.99018 0.75315 0.84493 0.81230 0.73608 0.73549 0.80677 0.82752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 2 C 0.01 0.29 5.46 84.65 0.46 0.76 16 3 Si 0.99 41.41 29.54 68.60 2.03 43.44 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.56 -29.87 9.28 25.60 0.24 -29.63 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.26 14.36 5.43 85.63 0.46 14.83 16 10 N -0.69 -29.34 5.50 -469.70 -2.58 -31.92 16 11 C 0.53 21.95 7.77 86.79 0.67 22.62 16 12 O -0.59 -29.64 16.35 -3.90 -0.06 -29.71 16 13 C -0.09 -2.66 5.87 -20.09 -0.12 -2.78 16 14 C -0.10 -2.63 9.60 22.53 0.22 -2.42 16 15 C -0.03 -0.53 9.50 22.23 0.21 -0.32 16 16 C -0.67 -11.50 5.98 22.33 0.13 -11.37 16 17 S 2.74 37.56 6.28 -56.49 -0.35 37.21 16 18 N -1.22 -6.13 9.52 37.02 0.35 -5.77 16 19 O -0.98 -18.94 17.26 -128.00 -2.21 -21.15 16 20 O -0.98 -19.54 17.27 -128.00 -2.21 -21.75 16 21 C -0.03 -0.45 9.50 22.23 0.21 -0.24 16 22 C -0.11 -2.49 9.54 22.53 0.21 -2.28 16 23 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 24 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 25 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H 0.41 13.99 6.36 -92.71 -0.59 13.40 16 27 H 0.14 3.82 7.65 -2.91 -0.02 3.79 16 28 H 0.17 2.43 7.60 -2.91 -0.02 2.41 16 29 H 0.43 0.64 8.96 -96.74 -0.87 -0.23 16 30 H 0.43 0.54 8.96 -96.75 -0.87 -0.33 16 31 H 0.18 2.07 7.60 -2.91 -0.02 2.05 16 32 H 0.15 2.96 6.41 -2.92 -0.02 2.94 16 Total: -1.00 -81.55 299.99 -3.17 -84.72 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -1.12 Total: 10.87 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 2.71 Total: -10.83 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -1.95 Total: -92.81 kcal Atomic # 8 Polarization: -68.12 SS G_CDS: -4.48 Total: -72.60 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 37.56 SS G_CDS: -0.35 Total: 37.21 kcal Total: -81.55 -3.17 -84.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350870606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.221 kcal (2) G-P(sol) polarization free energy of solvation -81.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds