Wall clock time and date at job start Wed Apr 15 2020 11:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99922 * 2 1 4 4 H 1.48496 * 109.47535 * 270.00575 * 3 2 1 5 5 H 1.48505 * 109.47221 * 30.00702 * 3 2 1 6 6 H 1.48509 * 109.46946 * 150.00297 * 3 2 1 7 7 C 1.37879 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99897 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00394 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40118 * 71.35747 * 9 7 2 11 11 O 1.42102 * 106.39656 * 298.44111 * 9 7 2 12 12 N 1.65591 * 107.21863 * 184.90204 * 9 7 2 13 13 C 1.39712 * 119.99987 * 298.38218 * 12 9 7 14 14 C 1.38941 * 120.59888 * 313.88437 * 13 12 9 15 15 N 1.31571 * 120.60170 * 180.02562 * 14 13 12 16 16 C 1.32403 * 122.22074 * 0.03552 * 15 14 13 17 17 C 1.37930 * 120.43312 * 359.79100 * 16 15 14 18 18 C 1.38794 * 119.34575 * 0.25362 * 17 16 15 19 19 C 1.50524 * 121.78744 * 180.29896 * 17 16 15 20 20 O 1.42750 * 110.25486 * 344.07949 * 19 17 16 21 21 C 1.43213 * 113.08988 * 51.50260 * 20 19 17 22 22 C 1.50877 * 118.50285 * 179.49573 * 16 15 14 23 23 H 0.96994 * 120.00070 * 359.97438 * 1 2 3 24 24 H 0.97002 * 120.00482 * 118.38838 * 12 9 7 25 25 H 1.08007 * 119.69780 * 0.08464 * 14 13 12 26 26 H 1.07996 * 120.69618 * 179.84812 * 18 17 16 27 27 H 1.09002 * 109.33858 * 104.31789 * 19 17 16 28 28 H 1.08995 * 109.34546 * 223.83465 * 19 17 16 29 29 H 1.08998 * 109.62709 * 169.62106 * 21 20 19 30 30 H 1.08995 * 109.78078 * 49.14746 * 21 20 19 31 31 H 1.08998 * 109.41986 * 283.10949 * 22 16 15 32 32 H 1.09001 * 109.42246 * 42.92813 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7201 -0.0005 10 8 0.5450 -2.8494 -1.2920 11 8 0.3612 -2.7431 1.1985 12 7 2.2433 -3.9325 0.1339 13 6 3.2156 -4.0983 -0.8555 14 6 2.8679 -4.0710 -2.2005 15 7 3.7835 -4.2276 -3.1323 16 6 5.0613 -4.4168 -2.8418 17 6 5.4814 -4.4520 -1.5285 18 6 4.5500 -4.2924 -0.5119 19 6 6.9271 -4.6585 -1.1637 20 8 7.6531 -5.1603 -2.2857 21 6 7.4652 -4.3792 -3.4712 22 6 6.0385 -4.5983 -3.9769 23 1 -0.4850 0.8400 0.0004 24 1 2.2242 -4.5278 0.8996 25 1 1.8368 -3.9189 -2.4836 26 1 4.8546 -4.3188 0.5239 27 1 7.3594 -3.7084 -0.8497 28 1 6.9939 -5.3717 -0.3422 29 1 8.1766 -4.6948 -4.2343 30 1 7.6153 -3.3235 -3.2451 31 1 5.9467 -5.6084 -4.3761 32 1 5.8181 -3.8771 -4.7638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192929327.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:02 Heat of formation + Delta-G solvation = -103.778830 kcal Electronic energy + Delta-G solvation = -20348.155739 eV Core-core repulsion = 17013.930450 eV Total energy + Delta-G solvation = -3334.225288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.62315 -38.21665 -35.53848 -35.06940 -34.21325 -33.22083 -32.64969 -31.91216 -28.67562 -26.26555 -25.85435 -23.90276 -22.77054 -20.71917 -19.27449 -17.90534 -17.47985 -16.61355 -16.51080 -16.19937 -15.70147 -15.15445 -14.94794 -14.72986 -14.16208 -14.00659 -13.70574 -13.21893 -12.90106 -12.73375 -12.19470 -12.13004 -11.87774 -11.42906 -11.29519 -11.07150 -10.98219 -10.68656 -10.53922 -10.41753 -10.23088 -10.04499 -9.35286 -9.32272 -9.07474 -8.95751 -8.00206 -6.82225 -5.45927 1.25399 1.43243 2.06009 3.00612 3.07386 3.13054 3.69433 3.92084 3.95173 4.28809 4.47611 4.55481 4.63902 4.74684 5.00645 5.13346 5.14719 5.22795 5.41648 5.44775 5.53695 5.60027 5.69152 5.81797 5.89160 6.15878 6.29112 6.32518 6.68746 6.91727 6.93659 7.20408 7.56653 7.83083 8.25149 8.76514 10.12197 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.005705 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.982692 B = 4907.143218 C = 5471.618119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.134 3.866 3 Si 0.922 3.078 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.262 1.262 7 C -1.014 5.014 8 H 0.102 0.898 9 S 2.702 3.298 10 O -0.996 6.996 11 O -0.990 6.990 12 N -1.069 6.069 13 C 0.129 3.871 14 C 0.087 3.913 15 N -0.462 5.462 16 C 0.107 3.893 17 C -0.160 4.160 18 C -0.096 4.096 19 C 0.109 3.891 20 O -0.376 6.376 21 C 0.059 3.941 22 C -0.097 4.097 23 H 0.293 0.707 24 H 0.414 0.586 25 H 0.190 0.810 26 H 0.139 0.861 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.375 -6.897 -2.978 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.085 4.085 3 Si 0.746 3.254 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.186 1.186 7 C -1.148 5.148 8 H 0.121 0.879 9 S 2.803 3.197 10 O -0.986 6.986 11 O -0.980 6.980 12 N -0.814 5.814 13 C 0.029 3.971 14 C -0.075 4.075 15 N -0.170 5.170 16 C -0.031 4.031 17 C -0.163 4.163 18 C -0.126 4.126 19 C 0.032 3.968 20 O -0.294 6.294 21 C -0.018 4.018 22 C -0.135 4.135 23 H 0.103 0.897 24 H 0.248 0.752 25 H 0.206 0.794 26 H 0.157 0.843 27 H 0.086 0.914 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.041 -6.991 -4.004 14.488 hybrid contribution 0.862 1.244 1.439 2.088 sum 12.903 -5.747 -2.565 14.356 Atomic orbital electron populations 1.69881 1.06729 1.31006 1.39476 1.24734 0.94521 1.00838 0.88364 0.86126 0.80134 0.79804 0.79350 1.19032 1.19771 1.18634 1.30352 1.05978 1.11054 1.67435 0.87943 1.01027 0.72033 0.73317 0.73284 1.93330 1.75778 1.87035 1.42458 1.93402 1.68683 1.87219 1.48731 1.54075 1.47056 1.49652 1.30575 1.18433 0.88980 0.99744 0.89903 1.23809 1.00984 0.95395 0.87298 1.67571 1.00971 1.11219 1.37245 1.20793 0.91856 0.97942 0.92475 1.20871 0.97466 1.03872 0.94066 1.21394 0.91233 1.00189 0.99791 1.21325 0.86304 1.00121 0.89087 1.88056 1.68615 1.53525 1.19217 1.22669 0.95718 0.95822 0.87599 1.20961 0.92517 1.04012 0.96012 0.89655 0.75239 0.79350 0.84306 0.91449 0.87654 0.87986 0.92379 0.89284 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.08 13.10 55.43 0.73 -23.36 16 2 C 0.13 3.66 5.46 -17.82 -0.10 3.56 16 3 Si 0.92 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -1.01 -27.24 9.61 30.60 0.29 -26.94 16 8 H 0.10 2.57 7.81 -52.48 -0.41 2.16 16 9 S 2.70 68.79 4.95 -107.50 -0.53 68.26 16 10 O -1.00 -27.33 15.19 -57.17 -0.87 -28.20 16 11 O -0.99 -27.81 17.92 -57.17 -1.02 -28.83 16 12 N -1.07 -20.65 5.79 32.47 0.19 -20.46 16 13 C 0.13 2.41 6.16 -83.67 -0.52 1.89 16 14 C 0.09 1.75 10.41 -17.40 -0.18 1.56 16 15 N -0.46 -8.57 10.22 -9.26 -0.09 -8.67 16 16 C 0.11 1.68 6.68 -82.37 -0.55 1.13 16 17 C -0.16 -2.32 5.80 -104.61 -0.61 -2.92 16 18 C -0.10 -1.48 9.75 -39.04 -0.38 -1.86 16 19 C 0.11 1.22 6.67 35.92 0.24 1.46 16 20 O -0.38 -4.41 10.81 -35.23 -0.38 -4.79 16 21 C 0.06 0.58 6.84 37.13 0.25 0.84 16 22 C -0.10 -1.14 6.24 -27.83 -0.17 -1.32 16 23 H 0.29 7.52 8.31 -40.82 -0.34 7.19 16 24 H 0.41 6.54 8.96 -34.47 -0.31 6.23 16 25 H 0.19 4.08 5.74 -52.48 -0.30 3.78 16 26 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.54 8.07 -51.93 -0.42 0.13 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 290.11 15.07 4.37 4.37 Total: -1.00 -34.28 290.11 -7.46 -41.74 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -3.11 Total: 7.27 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -1.72 Total: -22.60 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.82 Total: -52.48 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -2.27 Total: -61.82 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 68.79 SS G_CDS: -0.53 Total: 68.26 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.28 -7.46 -41.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192929327.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.036 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds