Wall clock time and date at job start Wed Apr 15 2020 11:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99922 * 2 1 4 4 H 1.48496 * 109.47535 * 270.00575 * 3 2 1 5 5 H 1.48505 * 109.47221 * 30.00702 * 3 2 1 6 6 H 1.48509 * 109.46946 * 150.00297 * 3 2 1 7 7 C 1.37879 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99897 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00394 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40118 * 71.35747 * 9 7 2 11 11 O 1.42102 * 106.39656 * 298.44111 * 9 7 2 12 12 N 1.65591 * 107.21863 * 184.90204 * 9 7 2 13 13 C 1.39712 * 119.99987 * 298.38218 * 12 9 7 14 14 C 1.38941 * 120.59888 * 313.88437 * 13 12 9 15 15 N 1.31571 * 120.60170 * 180.02562 * 14 13 12 16 16 C 1.32403 * 122.22074 * 0.03552 * 15 14 13 17 17 C 1.37930 * 120.43312 * 359.79100 * 16 15 14 18 18 C 1.38794 * 119.34575 * 0.25362 * 17 16 15 19 19 C 1.50524 * 121.78744 * 180.29896 * 17 16 15 20 20 O 1.42750 * 110.25486 * 344.07949 * 19 17 16 21 21 C 1.43213 * 113.08988 * 51.50260 * 20 19 17 22 22 C 1.50877 * 118.50285 * 179.49573 * 16 15 14 23 23 H 0.96994 * 120.00070 * 359.97438 * 1 2 3 24 24 H 0.97002 * 120.00482 * 118.38838 * 12 9 7 25 25 H 1.08007 * 119.69780 * 0.08464 * 14 13 12 26 26 H 1.07996 * 120.69618 * 179.84812 * 18 17 16 27 27 H 1.09002 * 109.33858 * 104.31789 * 19 17 16 28 28 H 1.08995 * 109.34546 * 223.83465 * 19 17 16 29 29 H 1.08998 * 109.62709 * 169.62106 * 21 20 19 30 30 H 1.08995 * 109.78078 * 49.14746 * 21 20 19 31 31 H 1.08998 * 109.41986 * 283.10949 * 22 16 15 32 32 H 1.09001 * 109.42246 * 42.92813 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7201 -0.0005 10 8 0.5450 -2.8494 -1.2920 11 8 0.3612 -2.7431 1.1985 12 7 2.2433 -3.9325 0.1339 13 6 3.2156 -4.0983 -0.8555 14 6 2.8679 -4.0710 -2.2005 15 7 3.7835 -4.2276 -3.1323 16 6 5.0613 -4.4168 -2.8418 17 6 5.4814 -4.4520 -1.5285 18 6 4.5500 -4.2924 -0.5119 19 6 6.9271 -4.6585 -1.1637 20 8 7.6531 -5.1603 -2.2857 21 6 7.4652 -4.3792 -3.4712 22 6 6.0385 -4.5983 -3.9769 23 1 -0.4850 0.8400 0.0004 24 1 2.2242 -4.5278 0.8996 25 1 1.8368 -3.9189 -2.4836 26 1 4.8546 -4.3188 0.5239 27 1 7.3594 -3.7084 -0.8497 28 1 6.9939 -5.3717 -0.3422 29 1 8.1766 -4.6948 -4.2343 30 1 7.6153 -3.3235 -3.2451 31 1 5.9467 -5.6084 -4.3761 32 1 5.8181 -3.8771 -4.7638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192929327.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:02 Heat of formation + Delta-G solvation = -132.056787 kcal Electronic energy + Delta-G solvation = -20349.381963 eV Core-core repulsion = 17013.930450 eV Total energy + Delta-G solvation = -3335.451513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.82596 -39.24449 -37.57950 -36.55358 -36.31561 -35.25187 -33.82084 -32.98979 -29.89743 -28.34717 -26.94961 -24.97838 -23.95838 -21.91480 -21.19628 -19.66650 -18.88718 -18.34313 -17.75121 -17.39919 -17.17825 -16.73138 -16.13829 -16.02463 -15.73898 -15.65732 -15.14135 -14.28715 -14.22092 -14.07282 -13.76652 -13.45646 -13.40329 -13.07520 -12.86993 -12.68453 -12.65396 -12.41513 -12.34950 -12.16176 -11.60415 -11.31230 -11.08494 -10.97172 -10.55492 -10.23125 -9.42231 -8.82516 -7.57106 -0.17313 0.10164 0.30066 1.29540 1.30941 1.46430 2.14037 2.50471 2.57439 2.69021 2.90199 3.27616 3.46542 3.64662 3.71605 3.79564 3.99065 4.24300 4.27175 4.34674 4.45582 4.54196 4.62887 4.68094 4.79925 4.92656 5.03258 5.14863 5.18137 5.23093 5.59571 5.79661 6.10746 6.13497 6.70235 6.91516 8.13798 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.005705 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.982692 B = 4907.143218 C = 5471.618119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.258 1.258 6 H -0.246 1.246 7 C -1.033 5.033 8 H 0.116 0.884 9 S 2.712 3.288 10 O -1.028 7.028 11 O -1.025 7.025 12 N -1.053 6.053 13 C 0.104 3.896 14 C 0.056 3.944 15 N -0.483 5.483 16 C 0.097 3.903 17 C -0.153 4.153 18 C -0.084 4.084 19 C 0.109 3.891 20 O -0.384 6.384 21 C 0.060 3.940 22 C -0.098 4.098 23 H 0.301 0.699 24 H 0.429 0.571 25 H 0.159 0.841 26 H 0.175 0.825 27 H 0.088 0.912 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.140 -6.588 -2.657 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.182 1.182 6 H -0.169 1.169 7 C -1.167 5.167 8 H 0.134 0.866 9 S 2.814 3.186 10 O -1.018 7.018 11 O -1.016 7.016 12 N -0.803 5.803 13 C 0.005 3.995 14 C -0.105 4.105 15 N -0.192 5.192 16 C -0.041 4.041 17 C -0.156 4.156 18 C -0.114 4.114 19 C 0.032 3.968 20 O -0.303 6.303 21 C -0.016 4.016 22 C -0.136 4.136 23 H 0.111 0.889 24 H 0.267 0.733 25 H 0.176 0.824 26 H 0.193 0.807 27 H 0.106 0.894 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.790 -6.710 -3.673 17.546 hybrid contribution -0.199 1.018 1.248 1.623 sum 15.591 -5.692 -2.425 16.774 Atomic orbital electron populations 1.69966 1.08601 1.32560 1.40778 1.25964 0.95417 1.05173 0.87482 0.85162 0.79337 0.74929 0.80019 1.18195 1.18232 1.16930 1.30690 1.06824 1.11927 1.67260 0.86596 1.00379 0.72347 0.73797 0.72046 1.93298 1.77201 1.87642 1.43646 1.93344 1.70433 1.88013 1.49767 1.53257 1.46716 1.48745 1.31573 1.18515 0.90129 1.01987 0.88875 1.23459 1.00418 0.97971 0.88651 1.67537 1.02232 1.12165 1.37302 1.21594 0.91351 0.96437 0.94723 1.21367 0.99442 1.01588 0.93218 1.21759 0.89540 0.98107 1.01948 1.21545 0.83604 1.01985 0.89653 1.88065 1.68316 1.54137 1.19736 1.22845 0.94707 0.96312 0.87774 1.21135 0.92880 1.04653 0.94910 0.88861 0.73305 0.82410 0.80729 0.89397 0.85150 0.84959 0.91623 0.88491 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.00 13.10 21.45 0.28 -51.71 16 2 C 0.07 4.02 5.46 84.65 0.46 4.48 16 3 Si 0.99 40.68 29.54 68.60 2.03 42.71 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 5 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 7 C -1.03 -55.99 9.61 67.73 0.65 -55.33 16 8 H 0.12 5.74 7.81 -2.91 -0.02 5.72 16 9 S 2.71 142.70 4.95 -56.49 -0.28 142.42 16 10 O -1.03 -59.53 15.19 -128.00 -1.94 -61.48 16 11 O -1.03 -59.54 17.92 -128.00 -2.29 -61.84 16 12 N -1.05 -41.16 5.79 -51.18 -0.30 -41.46 16 13 C 0.10 3.86 6.16 38.27 0.24 4.10 16 14 C 0.06 2.33 10.41 84.90 0.88 3.21 16 15 N -0.48 -18.17 10.22 -183.20 -1.87 -20.04 16 16 C 0.10 2.90 6.68 42.46 0.28 3.18 16 17 C -0.15 -3.99 5.80 -19.86 -0.12 -4.11 16 18 C -0.08 -2.38 9.75 22.62 0.22 -2.16 16 19 C 0.11 1.95 6.67 71.18 0.47 2.42 16 20 O -0.38 -7.34 10.81 -148.98 -1.61 -8.95 16 21 C 0.06 0.95 6.84 71.96 0.49 1.44 16 22 C -0.10 -2.06 6.24 29.88 0.19 -1.88 16 23 H 0.30 15.79 8.31 -92.71 -0.77 15.02 16 24 H 0.43 13.53 8.96 -96.75 -0.87 12.67 16 25 H 0.16 7.42 5.74 -2.91 -0.02 7.40 16 26 H 0.18 3.58 8.06 -2.91 -0.02 3.56 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 0.96 8.07 -2.39 -0.02 0.94 16 31 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -77.07 290.11 -1.91 -78.98 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.30 Total: 26.02 kcal Atomic # 6 Polarization: -48.42 SS G_CDS: 3.77 Total: -44.64 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -1.89 Total: -113.22 kcal Atomic # 8 Polarization: -126.41 SS G_CDS: -5.85 Total: -132.26 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 142.70 SS G_CDS: -0.28 Total: 142.42 kcal Total: -77.07 -1.91 -78.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192929327.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.081 kcal (2) G-P(sol) polarization free energy of solvation -77.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds