Wall clock time and date at job start Wed Apr 15 2020 11:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 116.99990 * 2 1 4 4 O 1.20817 * 119.99819 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00088 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47263 * 179.97438 * 5 3 2 7 7 C 1.36980 * 120.00305 * 262.48836 * 6 5 3 8 8 H 1.08004 * 120.00250 * 213.46086 * 7 6 5 9 9 C 1.38976 * 119.99802 * 33.45948 * 7 6 5 10 10 N 1.31415 * 119.99789 * 5.25807 * 9 7 6 11 11 Si 1.86800 * 120.00001 * 185.25482 * 9 7 6 12 12 H 1.48500 * 109.46714 * 90.00308 * 11 9 7 13 13 H 1.48500 * 109.47145 * 209.99951 * 11 9 7 14 14 H 1.48501 * 109.47116 * 330.00313 * 11 9 7 15 15 C 1.34774 * 119.99808 * 82.48868 * 6 5 3 16 16 O 1.21646 * 120.00132 * 5.42570 * 15 6 5 17 17 C 1.47272 * 120.00307 * 185.42793 * 15 6 5 18 18 C 1.37965 * 123.09084 * 26.92012 * 17 15 6 19 19 S 1.72015 * 105.36198 * 179.97438 * 18 17 15 20 20 N 1.69482 * 96.03448 * 0.02562 * 19 18 17 21 21 C 1.29510 * 107.85936 * 359.97438 * 20 19 18 22 22 C 1.50706 * 121.53204 * 179.97438 * 21 20 19 23 23 H 1.09005 * 109.47006 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47602 * 299.99927 * 1 2 3 25 25 H 1.09001 * 109.47048 * 60.00655 * 1 2 3 26 26 H 1.09001 * 109.47283 * 59.99939 * 5 3 2 27 27 H 1.09006 * 109.47228 * 299.99767 * 5 3 2 28 28 H 0.97003 * 119.99983 * 179.97438 * 10 9 7 29 29 H 1.07993 * 127.32081 * 0.22315 * 18 17 15 30 30 H 1.09000 * 109.46923 * 90.02649 * 22 21 20 31 31 H 1.09000 * 109.46793 * 210.02848 * 22 21 20 32 32 H 1.08995 * 109.46960 * 330.03115 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.3251 3.2919 -1.1765 8 1 5.0932 4.0510 -1.1861 9 6 3.6850 2.9360 -2.3576 10 7 2.6808 2.0888 -2.3313 11 14 4.2521 3.6621 -3.9826 12 1 5.2965 2.7896 -4.5769 13 1 3.0980 3.7564 -4.9123 14 1 4.8127 5.0175 -3.7504 15 6 4.0259 3.3700 1.1566 16 8 3.8171 2.8022 2.2120 17 6 4.3270 4.8115 1.1430 18 6 4.0531 5.6281 0.0652 19 16 4.5813 7.1961 0.5356 20 7 5.1260 6.7459 2.0761 21 6 4.9143 5.4760 2.2168 22 6 5.2874 4.7504 3.4839 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 3.9564 0.7806 -0.8891 27 1 3.9557 0.7810 0.8909 28 1 2.2337 1.8407 -3.1556 29 1 3.5993 5.3441 -0.8727 30 1 4.4462 4.7732 4.1767 31 1 5.5375 3.7156 3.2498 32 1 6.1482 5.2377 3.9416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179505401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:30 Heat of formation + Delta-G solvation = -81.866682 kcal Electronic energy + Delta-G solvation = -20950.981786 eV Core-core repulsion = 17617.706680 eV Total energy + Delta-G solvation = -3333.275106 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -41.51328 -40.65489 -38.96971 -37.21134 -36.52701 -33.59813 -32.70642 -30.49753 -29.97108 -27.82766 -27.00751 -24.73248 -22.67618 -21.44993 -20.59302 -19.71921 -18.46432 -17.97275 -17.76756 -17.31904 -16.91139 -16.20632 -16.19020 -15.74074 -15.51550 -14.97057 -14.52044 -14.26510 -14.17600 -13.83502 -13.37971 -13.32166 -13.12671 -12.95867 -12.84700 -12.69316 -12.51143 -12.28014 -12.08941 -11.71585 -11.51833 -11.36017 -10.94588 -10.62588 -10.44123 -9.78509 -9.51820 -8.40062 -6.10588 -0.37458 0.51635 0.82800 0.96720 1.47027 1.48374 1.58324 1.81635 1.98725 2.28146 2.43882 2.83704 3.12460 3.71545 4.17370 4.26761 4.36320 4.37799 4.43830 4.46983 4.56838 4.68897 4.73889 4.74701 4.77431 4.86766 5.20890 5.36187 5.65778 5.72485 5.78362 6.29504 7.01118 7.27810 7.40650 7.80845 8.66178 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.015117 B = 0.008215 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.812943 B = 3407.786563 C = 4721.682607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.378 6.378 3 C 0.486 3.514 4 O -0.531 6.531 5 C 0.157 3.843 6 N -0.430 5.430 7 C -0.351 4.351 8 H 0.109 0.891 9 C 0.009 3.991 10 N -0.887 5.887 11 Si 0.983 3.017 12 H -0.269 1.269 13 H -0.289 1.289 14 H -0.252 1.252 15 C 0.533 3.467 16 O -0.612 6.612 17 C -0.215 4.215 18 C -0.136 4.136 19 S 0.285 5.715 20 N -0.496 5.496 21 C 0.151 3.849 22 C -0.071 4.071 23 H 0.132 0.868 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.273 0.727 29 H 0.200 0.800 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 1.182 0.413 2.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.295 6.295 3 C 0.329 3.671 4 O -0.418 6.418 5 C 0.032 3.968 6 N -0.148 5.148 7 C -0.478 4.478 8 H 0.126 0.874 9 C -0.195 4.195 10 N -0.524 5.524 11 Si 0.807 3.193 12 H -0.194 1.194 13 H -0.215 1.215 14 H -0.176 1.176 15 C 0.322 3.678 16 O -0.499 6.499 17 C -0.235 4.235 18 C -0.285 4.285 19 S 0.440 5.560 20 N -0.317 5.317 21 C -0.027 4.027 22 C -0.133 4.133 23 H 0.151 0.849 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.135 0.865 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.216 0.784 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.930 3.292 0.834 3.906 hybrid contribution -0.876 -1.678 -1.100 2.189 sum 1.053 1.615 -0.266 1.946 Atomic orbital electron populations 1.23252 0.76303 1.04701 1.01087 1.86414 1.23979 1.33914 1.85236 1.23902 0.92517 0.80800 0.69885 1.90477 1.67196 1.37600 1.46548 1.20446 0.87220 0.85348 1.03831 1.43205 1.56763 1.08143 1.06650 1.19891 1.19976 1.24007 0.83964 0.87404 1.26164 0.93919 0.96648 1.02742 1.69730 1.20306 1.32995 1.29355 0.85047 0.77612 0.79703 0.76962 1.19423 1.21451 1.17577 1.17697 0.80606 0.85597 0.83873 1.90592 1.56905 1.70859 1.31589 1.20359 1.10774 0.96847 0.95499 1.28111 0.99091 0.98233 1.03113 1.83456 1.53199 1.10391 1.08956 1.76251 1.27504 1.14946 1.13018 1.21598 0.93903 0.89592 0.97568 1.20565 1.02657 0.99352 0.90705 0.84947 0.93282 0.93663 0.86457 0.88769 0.91724 0.78352 0.89785 0.90319 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 10.56 113.37 1.20 2.51 16 2 O -0.38 -15.62 10.57 -51.42 -0.54 -16.16 16 3 C 0.49 23.39 6.00 71.23 0.43 23.81 16 4 O -0.53 -28.96 15.11 21.99 0.33 -28.63 16 5 C 0.16 7.21 5.16 85.63 0.44 7.65 16 6 N -0.43 -20.75 2.16 -643.46 -1.39 -22.14 16 7 C -0.35 -16.22 6.56 84.07 0.55 -15.67 16 8 H 0.11 4.74 6.17 -2.91 -0.02 4.72 16 9 C 0.01 0.43 5.16 84.93 0.44 0.86 16 10 N -0.89 -43.50 8.77 21.67 0.19 -43.31 16 11 Si 0.98 36.16 29.56 68.60 2.03 38.18 16 12 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 13 H -0.29 -10.94 7.11 99.48 0.71 -10.23 16 14 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 15 C 0.53 25.79 6.92 86.62 0.60 26.39 16 16 O -0.61 -31.08 14.37 -4.18 -0.06 -31.14 16 17 C -0.21 -9.20 5.46 -20.72 -0.11 -9.31 16 18 C -0.14 -5.28 9.05 67.76 0.61 -4.67 16 19 S 0.28 9.12 23.69 -56.49 -1.34 7.78 16 20 N -0.50 -17.83 11.97 -51.04 -0.61 -18.44 16 21 C 0.15 5.80 6.75 43.15 0.29 6.09 16 22 C -0.07 -2.37 9.30 71.24 0.66 -1.71 16 23 H 0.13 3.04 8.14 -2.38 -0.02 3.02 16 24 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 25 H 0.04 1.57 8.13 -2.39 -0.02 1.55 16 26 H 0.12 5.28 7.03 -2.39 -0.02 5.26 16 27 H 0.09 4.04 7.59 -2.38 -0.02 4.02 16 28 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 29 H 0.20 8.02 6.17 -2.91 -0.02 8.00 16 30 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.08 2.83 6.47 -2.39 -0.02 2.82 16 32 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -61.57 290.86 4.88 -56.68 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 1.17 Total: 21.22 kcal Atomic # 6 Polarization: 30.85 SS G_CDS: 5.11 Total: 35.96 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -1.81 Total: -83.89 kcal Atomic # 8 Polarization: -75.66 SS G_CDS: -0.27 Total: -75.93 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.18 kcal Atomic # 16 Polarization: 9.12 SS G_CDS: -1.34 Total: 7.78 kcal Total: -61.57 4.88 -56.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179505401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.182 kcal (2) G-P(sol) polarization free energy of solvation -61.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds