Wall clock time and date at job start Wed Apr 15 2020 11:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65597 * 119.99926 * 2 1 4 4 O 1.42096 * 106.40195 * 178.26439 * 3 2 1 5 5 O 1.42108 * 106.40105 * 311.18495 * 3 2 1 6 6 C 1.76199 * 107.22117 * 64.72196 * 3 2 1 7 7 C 1.38403 * 119.92569 * 269.72919 * 6 3 2 8 8 C 1.38352 * 120.30620 * 179.76399 * 7 6 3 9 9 C 1.37968 * 120.15009 * 0.50745 * 8 7 6 10 10 C 1.39624 * 119.84624 * 359.74874 * 9 8 7 11 11 C 1.47726 * 120.15424 * 180.02562 * 10 9 8 12 12 O 1.21586 * 120.00195 * 179.97438 * 11 10 9 13 13 N 1.34783 * 119.99403 * 359.97438 * 11 10 9 14 14 C 1.36866 * 119.99511 * 179.97438 * 13 11 10 15 15 H 1.07998 * 120.00239 * 0.02562 * 14 13 11 16 16 C 1.39054 * 119.99896 * 179.97438 * 14 13 11 17 17 N 1.31361 * 120.00197 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99740 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47019 * 89.99669 * 18 16 14 20 20 H 1.48506 * 109.46855 * 209.99700 * 18 16 14 21 21 H 1.48498 * 109.47235 * 329.99501 * 18 16 14 22 22 C 1.37913 * 119.92523 * 89.99948 * 6 3 2 23 23 H 1.08998 * 109.47492 * 60.27856 * 1 2 3 24 24 H 1.08998 * 109.47377 * 180.28047 * 1 2 3 25 25 H 1.09009 * 109.47454 * 300.27562 * 1 2 3 26 26 H 0.97001 * 119.99790 * 179.71788 * 2 1 3 27 27 H 1.07996 * 119.84528 * 0.02562 * 7 6 3 28 28 H 1.07996 * 119.92896 * 180.25028 * 8 7 6 29 29 H 1.08000 * 120.07724 * 179.76638 * 9 8 7 30 30 H 0.97000 * 119.99898 * 0.02562 * 13 11 10 31 31 H 0.96993 * 119.99857 * 180.02562 * 17 16 14 32 32 H 1.08000 * 120.07535 * 359.96012 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6735 1.1004 0.0413 5 8 1.7161 2.2305 -1.0260 6 6 1.9314 2.2452 1.5218 7 6 0.8537 3.1097 1.6045 8 6 0.5597 3.7470 2.7968 9 6 1.3465 3.5324 3.9096 10 6 2.4384 2.6656 3.8319 11 6 3.2851 2.4304 5.0194 12 8 4.2350 1.6747 4.9488 13 7 3.0045 3.0536 6.1811 14 6 3.7886 2.8353 7.2815 15 1 4.6324 2.1640 7.2188 16 6 3.4995 3.4785 8.4799 17 7 4.2523 3.2694 9.5359 18 14 2.0405 4.6401 8.5881 19 1 0.8310 3.8792 8.9918 20 1 2.3211 5.6946 9.5954 21 1 1.8099 5.2699 7.2633 22 6 2.7262 2.0215 2.6265 23 1 -0.3634 0.5095 -0.8924 24 1 -0.3634 -1.0276 0.0050 25 1 -0.3634 0.5181 0.8876 26 1 1.9500 -0.8401 0.0041 27 1 0.2369 3.2843 0.7354 28 1 -0.2851 4.4172 2.8555 29 1 1.1182 4.0334 4.8387 30 1 2.2465 3.6561 6.2375 31 1 4.0504 3.7179 10.3719 32 1 3.5691 1.3496 2.5596 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162040128.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:37 Heat of formation + Delta-G solvation = -76.613403 kcal Electronic energy + Delta-G solvation = -19790.115701 eV Core-core repulsion = 16457.068393 eV Total energy + Delta-G solvation = -3333.047307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.61853 -37.69218 -37.29085 -35.91959 -35.19266 -34.28918 -32.19151 -31.13736 -30.96026 -26.23979 -25.58327 -23.46350 -22.73508 -20.26645 -19.43210 -19.05271 -17.78979 -17.51535 -16.46433 -16.03983 -15.91428 -15.19522 -14.99791 -14.55756 -14.06744 -13.98375 -13.93806 -13.56013 -13.08190 -13.02958 -12.62966 -12.40929 -12.28779 -12.16091 -12.08271 -11.79963 -11.51270 -11.39183 -10.86803 -10.77424 -10.17693 -9.85499 -9.83558 -9.42092 -8.89453 -8.79297 -8.41649 -6.56904 -4.00293 0.29431 0.73364 1.15405 2.81463 2.87344 2.92038 3.00170 3.21665 3.65234 3.88746 4.16073 4.18024 4.44323 4.76512 4.79371 4.90273 5.08510 5.10094 5.17065 5.35092 5.40405 5.44722 5.54036 5.72898 5.89397 6.04422 6.24763 6.35725 6.69842 6.78670 7.32022 7.91883 8.35054 8.70648 9.16274 9.60724 10.54494 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.031958 B = 0.004304 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.943550 B = 6504.277157 C = 6958.160723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.121 6.121 3 S 2.700 3.300 4 O -0.954 6.954 5 O -0.960 6.960 6 C -0.682 4.682 7 C -0.029 4.029 8 C -0.140 4.140 9 C -0.057 4.057 10 C -0.113 4.113 11 C 0.470 3.530 12 O -0.574 6.574 13 N -0.566 5.566 14 C -0.299 4.299 15 H 0.126 0.874 16 C 0.044 3.956 17 N -0.861 5.861 18 Si 0.878 3.122 19 H -0.266 1.266 20 H -0.271 1.271 21 H -0.268 1.268 22 C 0.025 3.975 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.420 0.580 27 H 0.139 0.861 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.371 0.629 31 H 0.279 0.721 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 -1.793 -15.713 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.881 5.881 3 S 2.789 3.211 4 O -0.944 6.944 5 O -0.950 6.950 6 C -0.769 4.769 7 C -0.049 4.049 8 C -0.159 4.159 9 C -0.077 4.077 10 C -0.117 4.117 11 C 0.259 3.741 12 O -0.459 6.459 13 N -0.202 5.202 14 C -0.428 4.428 15 H 0.144 0.856 16 C -0.161 4.161 17 N -0.498 5.498 18 Si 0.704 3.296 19 H -0.191 1.191 20 H -0.195 1.195 21 H -0.194 1.194 22 C 0.004 3.996 23 H 0.086 0.914 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.254 0.746 27 H 0.156 0.844 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.206 0.794 31 H 0.090 0.910 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.022 -1.780 -16.122 20.190 hybrid contribution -1.298 0.796 1.207 1.943 sum -13.320 -0.983 -14.915 20.021 Atomic orbital electron populations 1.21493 0.78556 1.04241 1.02019 1.55328 1.16167 1.24510 1.92068 1.01730 0.72883 0.72669 0.73810 1.93622 1.30524 1.83204 1.87077 1.93570 1.79035 1.68606 1.53767 1.30760 1.08009 1.16868 1.21284 1.20918 0.93583 0.92292 0.98078 1.21150 1.00664 1.01259 0.92796 1.21702 0.92858 0.94418 0.98716 1.20487 0.96798 0.98746 0.95709 1.17467 0.87526 0.86415 0.82722 1.90666 1.31190 1.40088 1.83956 1.42211 1.27635 1.40192 1.10207 1.19582 1.10740 1.26371 0.86113 0.85635 1.25141 0.98028 0.97823 0.95146 1.69589 1.37431 1.41438 1.01390 0.86682 0.82758 0.81316 0.78864 1.19098 1.19545 1.19353 1.20990 0.95256 0.93872 0.89454 0.91376 0.89935 0.92048 0.74609 0.84368 0.84869 0.85367 0.79448 0.91038 0.83071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 11.13 59.85 0.67 1.21 16 2 N -1.12 -9.70 6.19 -16.63 -0.10 -9.80 16 3 S 2.70 33.52 5.74 -107.50 -0.62 32.91 16 4 O -0.95 -15.09 17.27 -57.17 -0.99 -16.08 16 5 O -0.96 -13.40 17.00 -57.17 -0.97 -14.37 16 6 C -0.68 -9.39 5.94 -39.64 -0.24 -9.62 16 7 C -0.03 -0.34 9.52 -39.48 -0.38 -0.72 16 8 C -0.14 -1.68 10.03 -39.64 -0.40 -2.07 16 9 C -0.06 -0.85 9.54 -39.16 -0.37 -1.23 16 10 C -0.11 -2.09 5.87 -104.97 -0.62 -2.71 16 11 C 0.47 11.07 7.72 -12.38 -0.10 10.98 16 12 O -0.57 -15.76 15.92 5.29 0.08 -15.68 16 13 N -0.57 -13.39 5.03 -11.87 -0.06 -13.45 16 14 C -0.30 -8.23 10.16 -15.00 -0.15 -8.38 16 15 H 0.13 3.93 7.38 -52.49 -0.39 3.54 16 16 C 0.04 1.16 5.50 -17.45 -0.10 1.07 16 17 N -0.86 -23.97 13.95 55.50 0.77 -23.19 16 18 Si 0.88 18.28 27.74 -169.99 -4.71 13.57 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.27 -5.05 6.52 56.52 0.37 -4.68 16 22 C 0.03 0.43 9.07 -39.17 -0.36 0.07 16 23 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 26 H 0.42 2.89 8.96 -34.47 -0.31 2.58 16 27 H 0.14 1.28 7.60 -52.49 -0.40 0.88 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.13 1.74 6.40 -52.49 -0.34 1.41 16 30 H 0.37 7.58 3.79 -40.82 -0.15 7.43 16 31 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.15 2.70 7.20 -52.49 -0.38 2.32 16 LS Contribution 296.17 15.07 4.46 4.46 Total: -1.00 -35.40 296.17 -6.98 -42.38 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -2.82 Total: 10.65 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.03 Total: -11.41 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.61 Total: -46.44 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -1.88 Total: -46.12 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -4.71 Total: 13.57 kcal Atomic # 16 Polarization: 33.52 SS G_CDS: -0.62 Total: 32.91 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.40 -6.98 -42.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162040128.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.230 kcal (2) G-P(sol) polarization free energy of solvation -35.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds