Wall clock time and date at job start Wed Apr 15 2020 11:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65597 * 119.99926 * 2 1 4 4 O 1.42096 * 106.40195 * 178.26439 * 3 2 1 5 5 O 1.42108 * 106.40105 * 311.18495 * 3 2 1 6 6 C 1.76199 * 107.22117 * 64.72196 * 3 2 1 7 7 C 1.38403 * 119.92569 * 269.72919 * 6 3 2 8 8 C 1.38352 * 120.30620 * 179.76399 * 7 6 3 9 9 C 1.37968 * 120.15009 * 0.50745 * 8 7 6 10 10 C 1.39624 * 119.84624 * 359.74874 * 9 8 7 11 11 C 1.47726 * 120.15424 * 180.02562 * 10 9 8 12 12 O 1.21586 * 120.00195 * 179.97438 * 11 10 9 13 13 N 1.34783 * 119.99403 * 359.97438 * 11 10 9 14 14 C 1.36866 * 119.99511 * 179.97438 * 13 11 10 15 15 H 1.07998 * 120.00239 * 0.02562 * 14 13 11 16 16 C 1.39054 * 119.99896 * 179.97438 * 14 13 11 17 17 N 1.31361 * 120.00197 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99740 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47019 * 89.99669 * 18 16 14 20 20 H 1.48506 * 109.46855 * 209.99700 * 18 16 14 21 21 H 1.48498 * 109.47235 * 329.99501 * 18 16 14 22 22 C 1.37913 * 119.92523 * 89.99948 * 6 3 2 23 23 H 1.08998 * 109.47492 * 60.27856 * 1 2 3 24 24 H 1.08998 * 109.47377 * 180.28047 * 1 2 3 25 25 H 1.09009 * 109.47454 * 300.27562 * 1 2 3 26 26 H 0.97001 * 119.99790 * 179.71788 * 2 1 3 27 27 H 1.07996 * 119.84528 * 0.02562 * 7 6 3 28 28 H 1.07996 * 119.92896 * 180.25028 * 8 7 6 29 29 H 1.08000 * 120.07724 * 179.76638 * 9 8 7 30 30 H 0.97000 * 119.99898 * 0.02562 * 13 11 10 31 31 H 0.96993 * 119.99857 * 180.02562 * 17 16 14 32 32 H 1.08000 * 120.07535 * 359.96012 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6735 1.1004 0.0413 5 8 1.7161 2.2305 -1.0260 6 6 1.9314 2.2452 1.5218 7 6 0.8537 3.1097 1.6045 8 6 0.5597 3.7470 2.7968 9 6 1.3465 3.5324 3.9096 10 6 2.4384 2.6656 3.8319 11 6 3.2851 2.4304 5.0194 12 8 4.2350 1.6747 4.9488 13 7 3.0045 3.0536 6.1811 14 6 3.7886 2.8353 7.2815 15 1 4.6324 2.1640 7.2188 16 6 3.4995 3.4785 8.4799 17 7 4.2523 3.2694 9.5359 18 14 2.0405 4.6401 8.5881 19 1 0.8310 3.8792 8.9918 20 1 2.3211 5.6946 9.5954 21 1 1.8099 5.2699 7.2633 22 6 2.7262 2.0215 2.6265 23 1 -0.3634 0.5095 -0.8924 24 1 -0.3634 -1.0276 0.0050 25 1 -0.3634 0.5181 0.8876 26 1 1.9500 -0.8401 0.0041 27 1 0.2369 3.2843 0.7354 28 1 -0.2851 4.4172 2.8555 29 1 1.1182 4.0334 4.8387 30 1 2.2465 3.6561 6.2375 31 1 4.0504 3.7179 10.3719 32 1 3.5691 1.3496 2.5596 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162040128.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:37 Heat of formation + Delta-G solvation = -107.103260 kcal Electronic energy + Delta-G solvation = -19791.437840 eV Core-core repulsion = 16457.068393 eV Total energy + Delta-G solvation = -3334.369447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.11679 -39.26426 -38.39327 -37.01666 -36.27294 -35.87708 -34.07359 -32.45681 -32.19758 -27.45331 -26.79470 -24.75680 -24.04333 -21.77283 -20.99856 -20.37445 -19.05738 -18.64635 -17.56138 -17.32347 -17.14471 -16.82648 -16.18912 -15.80654 -15.74844 -15.32353 -14.92789 -14.80533 -14.61162 -14.29042 -13.91919 -13.77068 -13.41443 -13.27692 -13.21002 -13.06181 -12.76063 -12.53948 -12.50974 -12.06307 -11.90086 -11.66912 -10.75852 -10.59940 -10.50299 -10.41385 -10.11689 -8.54446 -6.13616 -0.69889 -0.41008 -0.06408 1.23080 1.30845 1.39281 1.73097 2.05685 2.14109 2.50713 2.63209 2.73856 3.12895 3.29867 3.74832 3.75988 3.91475 4.08184 4.25829 4.31055 4.49157 4.72383 4.75687 4.88966 4.95520 5.04444 5.10695 5.16416 5.40063 5.68932 5.81063 6.07667 6.41843 6.69460 7.18341 7.73641 8.62106 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.031958 B = 0.004304 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.943550 B = 6504.277157 C = 6958.160723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -1.111 6.111 3 S 2.721 3.279 4 O -0.996 6.996 5 O -0.970 6.970 6 C -0.682 4.682 7 C -0.008 4.008 8 C -0.123 4.123 9 C -0.050 4.050 10 C -0.146 4.146 11 C 0.473 3.527 12 O -0.627 6.627 13 N -0.565 5.565 14 C -0.337 4.337 15 H 0.059 0.941 16 C -0.007 4.007 17 N -0.917 5.917 18 Si 0.959 3.041 19 H -0.248 1.248 20 H -0.267 1.267 21 H -0.230 1.230 22 C 0.009 3.991 23 H 0.076 0.924 24 H 0.107 0.893 25 H 0.069 0.931 26 H 0.428 0.572 27 H 0.179 0.821 28 H 0.186 0.814 29 H 0.146 0.854 30 H 0.391 0.609 31 H 0.285 0.715 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.093 0.313 -17.978 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.874 5.874 3 S 2.809 3.191 4 O -0.986 6.986 5 O -0.959 6.959 6 C -0.769 4.769 7 C -0.027 4.027 8 C -0.142 4.142 9 C -0.069 4.069 10 C -0.151 4.151 11 C 0.263 3.737 12 O -0.515 6.515 13 N -0.203 5.203 14 C -0.466 4.466 15 H 0.077 0.923 16 C -0.208 4.208 17 N -0.556 5.556 18 Si 0.777 3.223 19 H -0.172 1.172 20 H -0.191 1.191 21 H -0.153 1.153 22 C -0.012 4.012 23 H 0.095 0.905 24 H 0.125 0.875 25 H 0.088 0.912 26 H 0.265 0.735 27 H 0.196 0.804 28 H 0.203 0.797 29 H 0.164 0.836 30 H 0.228 0.772 31 H 0.095 0.905 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.992 0.327 -18.411 25.056 hybrid contribution 0.196 0.015 1.650 1.662 sum -16.796 0.343 -16.761 23.731 Atomic orbital electron populations 1.21847 0.76612 1.06306 1.02864 1.55059 1.17370 1.23446 1.91553 1.01003 0.71961 0.73020 0.73113 1.93571 1.33647 1.83933 1.87445 1.93553 1.79029 1.69569 1.53778 1.30930 1.08075 1.17513 1.20353 1.21568 0.92057 0.89496 0.99591 1.21699 1.00820 1.00623 0.91021 1.21959 0.91342 0.92794 1.00814 1.20092 0.98665 1.02528 0.93777 1.18441 0.86928 0.84403 0.83967 1.90621 1.33702 1.42001 1.85189 1.41892 1.28041 1.41200 1.09201 1.19086 1.10984 1.27753 0.88749 0.92252 1.26211 1.01756 0.99322 0.93535 1.69755 1.40191 1.43245 1.02379 0.85467 0.77714 0.78312 0.80787 1.17172 1.19130 1.15326 1.20834 0.95686 0.94237 0.90445 0.90502 0.87469 0.91206 0.73547 0.80366 0.79672 0.83603 0.77196 0.90493 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 11.13 127.77 1.42 2.05 16 2 N -1.11 -16.63 6.19 -206.53 -1.28 -17.90 16 3 S 2.72 62.86 5.74 -56.49 -0.32 62.53 16 4 O -1.00 -31.84 17.27 -128.00 -2.21 -34.05 16 5 O -0.97 -24.09 17.00 -128.00 -2.18 -26.26 16 6 C -0.68 -17.15 5.94 22.23 0.13 -17.01 16 7 C -0.01 -0.14 9.52 22.34 0.21 0.07 16 8 C -0.12 -2.17 10.03 22.23 0.22 -1.95 16 9 C -0.05 -1.30 9.54 22.54 0.22 -1.08 16 10 C -0.15 -5.38 5.87 -20.09 -0.12 -5.50 16 11 C 0.47 23.33 7.72 86.75 0.67 24.00 16 12 O -0.63 -37.42 15.92 -3.99 -0.06 -37.49 16 13 N -0.56 -27.44 5.03 -309.73 -1.56 -29.00 16 14 C -0.34 -19.79 10.16 84.10 0.85 -18.94 16 15 H 0.06 4.16 7.38 -2.91 -0.02 4.14 16 16 C -0.01 -0.39 5.50 84.96 0.47 0.07 16 17 N -0.92 -53.80 13.95 21.68 0.30 -53.50 16 18 Si 0.96 36.66 27.74 68.60 1.90 38.56 16 19 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 20 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.23 -7.28 6.52 99.48 0.65 -6.63 16 22 C 0.01 0.30 9.07 22.54 0.20 0.51 16 23 H 0.08 0.60 8.11 -2.39 -0.02 0.58 16 24 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.43 5.20 8.96 -96.74 -0.87 4.33 16 27 H 0.18 1.99 7.60 -2.91 -0.02 1.97 16 28 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 29 H 0.15 3.24 6.40 -2.91 -0.02 3.22 16 30 H 0.39 15.36 3.79 -92.71 -0.35 15.01 16 31 H 0.29 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.13 4.85 7.20 -2.91 -0.02 4.83 16 Total: -1.00 -86.80 296.17 -1.21 -88.01 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.09 Total: 26.87 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 4.28 Total: -17.77 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -2.53 Total: -100.40 kcal Atomic # 8 Polarization: -93.35 SS G_CDS: -4.45 Total: -97.80 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 1.90 Total: 38.56 kcal Atomic # 16 Polarization: 62.86 SS G_CDS: -0.32 Total: 62.53 kcal Total: -86.80 -1.21 -88.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162040128.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.093 kcal (2) G-P(sol) polarization free energy of solvation -86.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds