Wall clock time and date at job start Wed Apr 15 2020 11:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 120.00008 * 2 1 4 4 O 1.21550 * 119.99966 * 359.97438 * 3 2 1 5 5 C 1.47848 * 120.00150 * 179.97438 * 3 2 1 6 6 C 1.39575 * 120.14487 * 180.02562 * 5 3 2 7 7 C 1.37955 * 119.85263 * 180.27853 * 6 5 3 8 8 C 1.38361 * 120.14138 * 359.49245 * 7 6 5 9 9 S 1.76206 * 119.85107 * 180.25791 * 8 7 6 10 10 O 1.42101 * 106.40322 * 23.78934 * 9 8 7 11 11 O 1.42099 * 106.40239 * 156.71039 * 9 8 7 12 12 N 1.65598 * 107.21555 * 270.24982 * 9 8 7 13 13 C 1.36938 * 120.00154 * 65.00640 * 12 9 8 14 14 H 1.07998 * 119.99600 * 359.97438 * 13 12 9 15 15 C 1.38813 * 120.00055 * 179.97438 * 13 12 9 16 16 N 1.31618 * 119.99749 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99744 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47296 * 60.00034 * 17 15 13 19 19 H 1.48498 * 109.46778 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46903 * 299.99471 * 17 15 13 21 21 C 1.38356 * 120.29644 * 0.50649 * 8 7 6 22 22 C 1.37958 * 120.14423 * 359.75425 * 21 8 7 23 23 H 1.09007 * 109.46893 * 60.00137 * 1 2 3 24 24 H 1.08997 * 109.47086 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47252 * 300.00049 * 1 2 3 26 26 H 0.96996 * 120.00391 * 180.02562 * 2 1 3 27 27 H 1.08002 * 120.07104 * 359.97438 * 6 5 3 28 28 H 1.07998 * 119.92975 * 179.72529 * 7 6 5 29 29 H 0.97001 * 119.99861 * 244.99318 * 12 9 8 30 30 H 0.97008 * 119.99792 * 180.02562 * 16 15 13 31 31 H 1.08006 * 119.93372 * 179.76996 * 21 8 7 32 32 H 1.07997 * 120.07488 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2199 -0.0005 5 6 3.6174 1.1673 0.0006 6 6 4.3183 2.3743 0.0011 7 6 5.6978 2.3673 -0.0042 8 6 6.3865 1.1673 0.0006 9 16 8.1486 1.1673 0.0007 10 8 8.5498 2.4168 0.5456 11 8 8.5498 -0.0827 0.5446 12 7 8.6388 1.1679 -1.5811 13 6 8.3628 2.2431 -2.3830 14 1 7.8251 3.0904 -1.9839 15 6 8.7742 2.2439 -3.7088 16 7 9.4299 1.2114 -4.1949 17 14 8.3971 3.7103 -4.8028 18 1 9.0253 4.9285 -4.2316 19 1 8.9400 3.4654 -6.1631 20 1 6.9268 3.9026 -4.8833 21 6 5.6979 -0.0327 0.0001 22 6 4.3183 -0.0398 0.0000 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.9500 -0.8400 -0.0004 27 1 3.7818 3.3116 0.0007 28 1 6.2414 3.3005 -0.0082 29 1 9.1215 0.4068 -1.9395 30 1 9.7177 1.2120 -5.1213 31 1 6.2414 -0.9661 0.0001 32 1 3.7819 -0.9771 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192728669.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:41 Heat of formation + Delta-G solvation = -82.388180 kcal Electronic energy + Delta-G solvation = -19809.050970 eV Core-core repulsion = 16475.753249 eV Total energy + Delta-G solvation = -3333.297720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.15837 -38.12096 -36.15763 -34.86557 -34.77964 -34.72065 -31.40232 -31.04494 -30.82756 -27.14032 -24.61916 -23.70634 -22.43377 -20.68009 -18.67118 -18.36698 -18.13978 -17.06944 -16.31964 -16.16072 -15.36895 -14.95107 -14.91452 -14.54670 -14.17384 -14.05029 -13.49199 -13.34991 -13.29237 -12.64081 -12.53027 -12.43829 -12.02272 -11.35942 -11.20914 -11.11683 -11.03212 -10.91010 -10.65212 -10.45845 -10.23025 -10.09685 -9.87558 -9.42081 -9.03900 -8.84587 -8.36901 -6.57738 -3.98874 0.64321 1.47983 1.52236 2.74101 3.00267 3.16046 3.18510 3.21475 3.80667 4.01829 4.39600 4.58893 4.72707 4.77099 4.98305 5.01769 5.05870 5.24793 5.33614 5.51486 5.52869 5.76575 5.85045 6.11855 6.15354 6.21380 6.35673 6.49716 6.93114 6.99767 7.25000 7.38095 8.02256 8.55998 8.68408 9.11945 10.57394 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.005391 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.522736 B = 5192.745676 C = 6070.792704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.733 5.733 3 C 0.559 3.441 4 O -0.535 6.535 5 C -0.109 4.109 6 C -0.084 4.084 7 C -0.029 4.029 8 C -0.632 4.632 9 S 2.604 3.396 10 O -0.968 6.968 11 O -1.000 7.000 12 N -0.942 5.942 13 C -0.273 4.273 14 H 0.105 0.895 15 C 0.033 3.967 16 N -0.872 5.872 17 Si 0.923 3.077 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.271 1.271 21 C -0.035 4.035 22 C -0.114 4.114 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.403 0.597 27 H 0.138 0.862 28 H 0.144 0.856 29 H 0.411 0.589 30 H 0.277 0.723 31 H 0.140 0.860 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.162 -4.215 4.303 13.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.347 3.653 4 O -0.413 6.413 5 C -0.112 4.112 6 C -0.103 4.103 7 C -0.049 4.049 8 C -0.711 4.711 9 S 2.694 3.306 10 O -0.958 6.958 11 O -0.989 6.989 12 N -0.694 5.694 13 C -0.414 4.414 14 H 0.123 0.877 15 C -0.176 4.176 16 N -0.513 5.513 17 Si 0.749 3.251 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.196 1.196 21 C -0.054 4.054 22 C -0.133 4.133 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.238 0.762 27 H 0.156 0.844 28 H 0.162 0.838 29 H 0.247 0.753 30 H 0.087 0.913 31 H 0.158 0.842 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.220 -3.441 5.124 13.690 hybrid contribution -0.657 -0.250 -1.194 1.385 sum -12.877 -3.691 3.930 13.960 Atomic orbital electron populations 1.21549 0.79272 1.02276 1.02470 1.45726 1.07877 1.08778 1.76214 1.18422 0.87437 0.83658 0.75797 1.90761 1.70003 1.31178 1.49315 1.19998 0.92084 0.95033 1.04109 1.21358 0.94250 0.97497 0.97214 1.20976 0.93706 0.97653 0.92516 1.32482 1.32188 0.98007 1.08443 1.06974 0.74994 0.73109 0.75544 1.93479 1.80710 1.43459 1.78174 1.93415 1.82357 1.43944 1.79201 1.51864 1.59562 1.26079 1.31875 1.19343 1.35351 0.93583 0.93099 0.87706 1.25283 0.96841 0.98459 0.96989 1.69683 1.35509 1.29770 1.16356 0.86032 0.79103 0.81003 0.78944 1.19340 1.20616 1.19614 1.20817 0.93724 0.97442 0.93457 1.21280 0.94876 0.96483 1.00695 0.92073 0.90543 0.92114 0.76189 0.84445 0.83797 0.75292 0.91325 0.84186 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 10.70 59.85 0.64 1.36 16 2 N -0.73 -7.52 5.66 -68.04 -0.39 -7.91 16 3 C 0.56 8.07 7.77 -12.33 -0.10 7.98 16 4 O -0.54 -9.39 16.35 5.32 0.09 -9.30 16 5 C -0.11 -1.65 5.87 -104.97 -0.62 -2.27 16 6 C -0.08 -1.37 9.60 -39.19 -0.38 -1.75 16 7 C -0.03 -0.52 9.50 -39.64 -0.38 -0.90 16 8 C -0.63 -11.80 5.90 -39.49 -0.23 -12.03 16 9 S 2.60 55.30 5.70 -107.50 -0.61 54.68 16 10 O -0.97 -22.72 16.98 -57.17 -0.97 -23.69 16 11 O -1.00 -22.43 17.27 -57.17 -0.99 -23.41 16 12 N -0.94 -21.71 5.75 31.50 0.18 -21.53 16 13 C -0.27 -6.61 9.63 -15.06 -0.15 -6.76 16 14 H 0.11 2.40 7.82 -52.49 -0.41 1.99 16 15 C 0.03 0.80 5.50 -17.43 -0.10 0.71 16 16 N -0.87 -22.27 13.06 55.49 0.72 -21.54 16 17 Si 0.92 19.09 29.55 -169.99 -5.02 14.06 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.04 -0.58 9.50 -39.64 -0.38 -0.95 16 22 C -0.11 -1.57 9.54 -39.18 -0.37 -1.94 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.40 3.04 6.86 -40.82 -0.28 2.76 16 27 H 0.14 2.09 7.65 -52.49 -0.40 1.69 16 28 H 0.14 2.44 7.61 -52.49 -0.40 2.04 16 29 H 0.41 9.59 8.02 -34.47 -0.28 9.32 16 30 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.14 2.09 7.60 -52.48 -0.40 1.69 16 32 H 0.13 1.19 6.41 -52.49 -0.34 0.85 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -32.00 299.87 -7.42 -39.42 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -2.91 Total: 11.25 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -2.05 Total: -16.55 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.52 Total: -50.98 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -1.87 Total: -56.41 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Atomic # 16 Polarization: 55.30 SS G_CDS: -0.61 Total: 54.68 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.00 -7.42 -39.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192728669.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.968 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds