Wall clock time and date at job start Wed Apr 15 2020 11:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 120.00008 * 2 1 4 4 O 1.21550 * 119.99966 * 359.97438 * 3 2 1 5 5 C 1.47848 * 120.00150 * 179.97438 * 3 2 1 6 6 C 1.39575 * 120.14487 * 180.02562 * 5 3 2 7 7 C 1.37955 * 119.85263 * 180.27853 * 6 5 3 8 8 C 1.38361 * 120.14138 * 359.49245 * 7 6 5 9 9 S 1.76206 * 119.85107 * 180.25791 * 8 7 6 10 10 O 1.42101 * 106.40322 * 23.78934 * 9 8 7 11 11 O 1.42099 * 106.40239 * 156.71039 * 9 8 7 12 12 N 1.65598 * 107.21555 * 270.24982 * 9 8 7 13 13 C 1.36938 * 120.00154 * 65.00640 * 12 9 8 14 14 H 1.07998 * 119.99600 * 359.97438 * 13 12 9 15 15 C 1.38813 * 120.00055 * 179.97438 * 13 12 9 16 16 N 1.31618 * 119.99749 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99744 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47296 * 60.00034 * 17 15 13 19 19 H 1.48498 * 109.46778 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46903 * 299.99471 * 17 15 13 21 21 C 1.38356 * 120.29644 * 0.50649 * 8 7 6 22 22 C 1.37958 * 120.14423 * 359.75425 * 21 8 7 23 23 H 1.09007 * 109.46893 * 60.00137 * 1 2 3 24 24 H 1.08997 * 109.47086 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47252 * 300.00049 * 1 2 3 26 26 H 0.96996 * 120.00391 * 180.02562 * 2 1 3 27 27 H 1.08002 * 120.07104 * 359.97438 * 6 5 3 28 28 H 1.07998 * 119.92975 * 179.72529 * 7 6 5 29 29 H 0.97001 * 119.99861 * 244.99318 * 12 9 8 30 30 H 0.97008 * 119.99792 * 180.02562 * 16 15 13 31 31 H 1.08006 * 119.93372 * 179.76996 * 21 8 7 32 32 H 1.07997 * 120.07488 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2199 -0.0005 5 6 3.6174 1.1673 0.0006 6 6 4.3183 2.3743 0.0011 7 6 5.6978 2.3673 -0.0042 8 6 6.3865 1.1673 0.0006 9 16 8.1486 1.1673 0.0007 10 8 8.5498 2.4168 0.5456 11 8 8.5498 -0.0827 0.5446 12 7 8.6388 1.1679 -1.5811 13 6 8.3628 2.2431 -2.3830 14 1 7.8251 3.0904 -1.9839 15 6 8.7742 2.2439 -3.7088 16 7 9.4299 1.2114 -4.1949 17 14 8.3971 3.7103 -4.8028 18 1 9.0253 4.9285 -4.2316 19 1 8.9400 3.4654 -6.1631 20 1 6.9268 3.9026 -4.8833 21 6 5.6979 -0.0327 0.0001 22 6 4.3183 -0.0398 0.0000 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.9500 -0.8400 -0.0004 27 1 3.7818 3.3116 0.0007 28 1 6.2414 3.3005 -0.0082 29 1 9.1215 0.4068 -1.9395 30 1 9.7177 1.2120 -5.1213 31 1 6.2414 -0.9661 0.0001 32 1 3.7819 -0.9771 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192728669.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:40 Heat of formation + Delta-G solvation = -108.004989 kcal Electronic energy + Delta-G solvation = -19810.161798 eV Core-core repulsion = 16475.753249 eV Total energy + Delta-G solvation = -3334.408549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31919 -39.38344 -38.07111 -36.70731 -36.45541 -35.84952 -32.84421 -32.66667 -32.12931 -28.03955 -26.41729 -24.94601 -23.73052 -21.81113 -20.33686 -20.02709 -19.48148 -18.67335 -17.99003 -17.35147 -16.56813 -16.38157 -16.21249 -16.06467 -15.70014 -15.33335 -15.14572 -14.58488 -14.25892 -14.04464 -13.81852 -13.63840 -13.13429 -13.09395 -13.00121 -12.98965 -12.83880 -12.36738 -12.29126 -12.14827 -11.84843 -11.73671 -11.22499 -10.56756 -10.20235 -10.13102 -10.12257 -8.30783 -5.87275 -0.71218 -0.24863 0.23394 1.49199 1.51364 1.52636 1.58602 2.07001 2.29259 2.53323 2.69938 2.97190 3.22662 3.48626 3.55874 3.80277 3.85590 4.22796 4.37521 4.43268 4.52595 4.60722 4.84727 4.90954 4.96147 5.05993 5.08723 5.13635 5.27776 5.63308 5.68524 6.36876 6.76867 6.96254 7.03054 7.33752 8.87188 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.005391 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.522736 B = 5192.745676 C = 6070.792704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.713 5.713 3 C 0.556 3.444 4 O -0.572 6.572 5 C -0.103 4.103 6 C -0.093 4.093 7 C -0.039 4.039 8 C -0.650 4.650 9 S 2.672 3.328 10 O -0.994 6.994 11 O -1.004 7.004 12 N -0.972 5.972 13 C -0.313 4.313 14 H 0.107 0.893 15 C -0.013 4.013 16 N -0.926 5.926 17 Si 0.976 3.024 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.040 4.040 22 C -0.095 4.095 23 H 0.052 0.948 24 H 0.117 0.883 25 H 0.055 0.945 26 H 0.419 0.581 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.408 0.592 30 H 0.272 0.728 31 H 0.158 0.842 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.016 -5.745 5.628 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.365 5.365 3 C 0.343 3.657 4 O -0.453 6.453 5 C -0.106 4.106 6 C -0.112 4.112 7 C -0.058 4.058 8 C -0.736 4.736 9 S 2.763 3.237 10 O -0.984 6.984 11 O -0.993 6.993 12 N -0.725 5.725 13 C -0.447 4.447 14 H 0.125 0.875 15 C -0.215 4.215 16 N -0.568 5.568 17 Si 0.800 3.200 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.059 4.059 22 C -0.114 4.114 23 H 0.071 0.929 24 H 0.136 0.864 25 H 0.074 0.926 26 H 0.257 0.743 27 H 0.162 0.838 28 H 0.161 0.839 29 H 0.243 0.757 30 H 0.081 0.919 31 H 0.175 0.825 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -15.006 -4.957 6.345 17.030 hybrid contribution -0.074 0.079 -1.147 1.152 sum -15.080 -4.877 5.199 16.680 Atomic orbital electron populations 1.21787 0.77613 1.04837 1.01855 1.45666 1.08957 1.08116 1.73801 1.18343 0.86989 0.84371 0.76017 1.90757 1.70402 1.32756 1.51340 1.20304 0.93039 0.95113 1.02137 1.21464 0.93573 0.98808 0.97378 1.21021 0.94641 0.97268 0.92907 1.31592 1.28783 1.00103 1.13143 1.02881 0.75151 0.72225 0.73411 1.93473 1.81740 1.44943 1.78264 1.93441 1.82938 1.44272 1.78691 1.51269 1.64638 1.26524 1.30065 1.19415 1.36552 0.95380 0.93377 0.87522 1.25895 0.97006 1.00434 0.98162 1.69773 1.39160 1.31550 1.16326 0.85234 0.78946 0.78416 0.77379 1.19308 1.20691 1.19063 1.21158 0.95250 0.96877 0.92642 1.21717 0.93762 0.98105 0.97824 0.92873 0.86421 0.92605 0.74265 0.83756 0.83932 0.75686 0.91871 0.82467 0.80394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.70 127.77 1.37 2.37 16 2 N -0.71 -11.34 5.66 -487.46 -2.76 -14.10 16 3 C 0.56 14.17 7.77 86.79 0.67 14.85 16 4 O -0.57 -18.89 16.35 -3.87 -0.06 -18.95 16 5 C -0.10 -2.76 5.87 -20.09 -0.12 -2.88 16 6 C -0.09 -2.86 9.60 22.53 0.22 -2.64 16 7 C -0.04 -1.34 9.50 22.23 0.21 -1.13 16 8 C -0.65 -23.16 5.90 22.33 0.13 -23.03 16 9 S 2.67 112.05 5.70 -56.49 -0.32 111.73 16 10 O -0.99 -46.54 16.98 -128.00 -2.17 -48.72 16 11 O -1.00 -43.48 17.27 -128.00 -2.21 -45.69 16 12 N -0.97 -45.89 5.75 -54.26 -0.31 -46.20 16 13 C -0.31 -15.72 9.63 84.03 0.81 -14.91 16 14 H 0.11 5.07 7.82 -2.91 -0.02 5.05 16 15 C -0.01 -0.67 5.50 84.86 0.47 -0.20 16 16 N -0.93 -49.72 13.06 21.65 0.28 -49.44 16 17 Si 0.98 40.59 29.55 68.60 2.03 42.62 16 18 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 19 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 21 C -0.04 -1.17 9.50 22.23 0.21 -0.96 16 22 C -0.10 -2.17 9.54 22.53 0.21 -1.95 16 23 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 24 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.42 3.81 6.86 -92.71 -0.64 3.17 16 27 H 0.14 4.22 7.65 -2.91 -0.02 4.20 16 28 H 0.14 4.83 7.61 -2.91 -0.02 4.81 16 29 H 0.41 19.77 8.02 -96.75 -0.78 18.99 16 30 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 31 H 0.16 4.07 7.60 -2.91 -0.02 4.04 16 32 H 0.18 2.13 6.41 -2.91 -0.02 2.12 16 Total: -1.00 -71.12 299.87 -1.57 -72.69 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.23 Total: 26.53 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 4.19 Total: -30.48 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -2.79 Total: -109.74 kcal Atomic # 8 Polarization: -108.91 SS G_CDS: -4.45 Total: -113.36 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 16 Polarization: 112.05 SS G_CDS: -0.32 Total: 111.73 kcal Total: -71.12 -1.57 -72.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192728669.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.311 kcal (2) G-P(sol) polarization free energy of solvation -71.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds