Wall clock time and date at job start Wed Apr 15 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36210 * 117.00161 * 2 1 4 4 C 1.34082 * 122.49903 * 359.97438 * 3 2 1 5 5 S 1.70599 * 110.97409 * 179.74347 * 4 3 2 6 6 C 1.75814 * 91.62279 * 0.35240 * 5 4 3 7 7 C 1.46546 * 125.42990 * 179.90901 * 6 5 4 8 8 O 1.21712 * 120.00316 * 179.69449 * 7 6 5 9 9 N 1.34774 * 119.99714 * 359.69861 * 7 6 5 10 10 C 1.46506 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47289 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99571 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.37091 * 119.99763 * 179.97438 * 13 11 10 15 15 H 1.07998 * 120.00286 * 0.02562 * 14 13 11 16 16 C 1.38956 * 120.00028 * 180.02562 * 14 13 11 17 17 N 1.31411 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00028 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47309 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47233 * 119.99838 * 18 16 14 21 21 H 1.48498 * 109.47163 * 239.99767 * 18 16 14 22 22 C 1.36743 * 109.14403 * 359.65340 * 6 5 4 23 23 H 1.09006 * 109.46668 * 60.00418 * 1 2 3 24 24 H 1.09003 * 109.47125 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47119 * 300.00275 * 1 2 3 26 26 H 1.07995 * 124.51411 * 0.02562 * 4 3 2 27 27 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 28 28 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 29 29 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 30 30 H 0.96998 * 120.00166 * 0.02562 * 13 11 10 31 31 H 0.96996 * 120.00054 * 180.02562 * 17 16 14 32 32 H 1.08004 * 123.37114 * 180.30220 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3669 2.3689 -0.0005 5 16 2.4295 3.7035 0.0068 6 6 3.8354 2.6479 -0.0002 7 6 5.2317 3.0926 -0.0003 8 8 6.1315 2.2730 0.0002 9 7 5.5195 4.4093 -0.0008 10 6 6.9155 4.8540 -0.0002 11 6 6.9629 6.3603 -0.0016 12 8 5.9320 6.9994 -0.0024 13 7 8.1507 6.9971 -0.0008 14 6 8.1938 8.3673 -0.0026 15 1 7.2760 8.9365 -0.0041 16 6 9.4184 9.0239 -0.0024 17 7 10.5352 8.3314 -0.0010 18 14 9.4772 10.8910 -0.0040 19 1 8.0933 11.4298 -0.0060 20 1 10.1916 11.3648 1.2086 21 1 10.1932 11.3626 -1.2164 22 6 3.4183 1.3456 0.0001 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.2896 2.4445 -0.0006 27 1 4.8025 5.0626 -0.0014 28 1 7.4172 4.4751 0.8902 29 1 7.4181 4.4742 -0.8898 30 1 8.9750 6.4859 0.0002 31 1 11.3901 8.7897 -0.0005 32 1 4.0961 0.5047 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343524301.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:44 Heat of formation + Delta-G solvation = -99.209083 kcal Electronic energy + Delta-G solvation = -18817.841988 eV Core-core repulsion = 15483.814858 eV Total energy + Delta-G solvation = -3334.027129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.23905 -40.66843 -39.86111 -36.87267 -36.26726 -35.40079 -33.38777 -31.07794 -29.26532 -28.63633 -26.64464 -25.00011 -22.40551 -21.49033 -20.68870 -20.03882 -19.81538 -18.11854 -17.80117 -17.28798 -16.94626 -16.85244 -16.65284 -16.30285 -15.76645 -15.56353 -15.47946 -14.97326 -14.13545 -14.01508 -13.95552 -13.69467 -13.54936 -13.51728 -12.91425 -12.58172 -12.44146 -12.10487 -12.00531 -11.92138 -11.58129 -11.40523 -10.58219 -10.40699 -10.10104 -9.98222 -9.07423 -8.51075 -6.01133 -0.66638 0.35444 0.82867 1.27931 1.35553 1.43866 1.57578 1.79240 1.88321 2.01783 2.29254 2.48254 3.08198 3.16228 3.66360 3.92270 4.09964 4.19082 4.39525 4.39639 4.40431 4.43026 4.56183 4.76399 4.82504 5.00565 5.08289 5.39097 5.91358 6.23339 6.29966 6.47620 6.91452 7.03513 7.43220 7.93240 8.66012 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.049265 B = 0.002926 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.221033 B = 9567.895313 C =10115.665505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.324 6.324 3 C 0.088 3.912 4 C -0.323 4.323 5 S 0.269 5.731 6 C -0.267 4.267 7 C 0.591 3.409 8 O -0.564 6.564 9 N -0.703 5.703 10 C 0.120 3.880 11 C 0.432 3.568 12 O -0.623 6.623 13 N -0.558 5.558 14 C -0.335 4.335 15 H 0.087 0.913 16 C -0.011 4.011 17 N -0.916 5.916 18 Si 0.997 3.003 19 H -0.269 1.269 20 H -0.272 1.272 21 H -0.272 1.272 22 C -0.070 4.070 23 H 0.065 0.935 24 H 0.119 0.881 25 H 0.065 0.935 26 H 0.202 0.798 27 H 0.411 0.589 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.400 0.600 31 H 0.280 0.720 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.259 -12.580 0.020 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.239 6.239 3 C 0.032 3.968 4 C -0.462 4.462 5 S 0.536 5.464 6 C -0.387 4.387 7 C 0.378 3.622 8 O -0.445 6.445 9 N -0.356 5.356 10 C -0.008 4.008 11 C 0.219 3.781 12 O -0.511 6.511 13 N -0.193 5.193 14 C -0.465 4.465 15 H 0.105 0.895 16 C -0.212 4.212 17 N -0.556 5.556 18 Si 0.820 3.180 19 H -0.194 1.194 20 H -0.197 1.197 21 H -0.197 1.197 22 C -0.106 4.106 23 H 0.084 0.916 24 H 0.137 0.863 25 H 0.084 0.916 26 H 0.219 0.781 27 H 0.249 0.751 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.234 0.766 31 H 0.089 0.911 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -18.230 -11.245 0.029 21.419 hybrid contribution 0.423 -0.651 -0.010 0.777 sum -17.807 -11.896 0.019 21.415 Atomic orbital electron populations 1.23364 0.76072 1.05713 1.02368 1.86101 1.23510 1.24739 1.89586 1.17464 0.91052 0.85669 1.02665 1.25483 1.07219 0.96644 1.16811 1.83201 0.91199 1.05254 1.66771 1.24170 0.97316 0.98625 1.18634 1.17073 0.87283 0.81790 0.76021 1.90805 1.47968 1.53619 1.52080 1.45536 1.09018 1.06815 1.74238 1.20889 0.83635 0.91272 1.04961 1.20332 0.84131 0.89818 0.83783 1.90474 1.34028 1.68528 1.58059 1.41834 1.07045 1.07164 1.63253 1.19778 0.94300 0.82141 1.50253 0.89459 1.26139 0.93974 1.05272 0.95783 1.69683 0.98308 1.38310 1.49280 0.84807 0.78492 0.76384 0.78272 1.19351 1.19675 1.19688 1.20019 0.93904 0.96423 1.00242 0.91598 0.86275 0.91590 0.78065 0.75057 0.88067 0.88079 0.76613 0.91059 0.82578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.93 113.37 1.13 1.31 16 2 O -0.32 -6.29 10.56 -95.95 -1.01 -7.30 16 3 C 0.09 1.87 6.61 21.20 0.14 2.01 16 4 C -0.32 -5.57 9.81 66.87 0.66 -4.92 16 5 S 0.27 5.55 22.15 -56.49 -1.25 4.29 16 6 C -0.27 -7.27 6.45 24.09 0.16 -7.11 16 7 C 0.59 19.70 7.78 86.41 0.67 20.37 16 8 O -0.56 -21.79 16.84 -4.39 -0.07 -21.87 16 9 N -0.70 -23.91 5.52 -470.92 -2.60 -26.52 16 10 C 0.12 4.36 6.15 85.63 0.53 4.89 16 11 C 0.43 19.76 7.85 87.66 0.69 20.44 16 12 O -0.62 -31.79 15.24 -3.05 -0.05 -31.84 16 13 N -0.56 -27.68 5.29 -306.99 -1.62 -29.30 16 14 C -0.34 -18.27 9.68 84.04 0.81 -17.46 16 15 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 16 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 17 N -0.92 -48.29 13.05 21.66 0.28 -48.00 16 18 Si 1.00 41.37 29.55 68.60 2.03 43.40 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 22 C -0.07 -1.77 10.00 21.80 0.22 -1.56 16 23 H 0.07 0.49 7.84 -2.38 -0.02 0.48 16 24 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.49 7.84 -2.39 -0.02 0.48 16 26 H 0.20 2.10 6.96 -2.91 -0.02 2.08 16 27 H 0.41 13.75 6.55 -92.71 -0.61 13.15 16 28 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 29 H 0.10 3.46 8.14 -2.38 -0.02 3.44 16 30 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 31 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 32 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -67.00 304.34 1.02 -65.99 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: -0.15 Total: 33.27 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 5.46 Total: 17.88 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -3.94 Total: -103.82 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: -1.13 Total: -61.01 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 5.55 SS G_CDS: -1.25 Total: 4.29 kcal Total: -67.00 1.02 -65.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343524301.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.222 kcal (2) G-P(sol) polarization free energy of solvation -67.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds