Wall clock time and date at job start Wed Apr 15 2020 11:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35788 * 116.99688 * 2 1 4 4 C 1.38014 * 123.47394 * 359.97438 * 3 2 1 5 5 C 1.33617 * 115.08900 * 180.02562 * 4 3 2 6 6 S 1.70578 * 111.14234 * 359.97438 * 5 4 3 7 7 C 1.37271 * 123.46693 * 179.97438 * 3 2 1 8 8 C 1.41717 * 125.47925 * 359.96896 * 7 3 2 9 9 O 1.21776 * 120.00124 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99910 * 180.02562 * 8 7 3 11 11 C 1.46505 * 119.99816 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47203 * 180.02562 * 11 10 8 13 13 O 1.21297 * 119.99931 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00105 * 180.02562 * 12 11 10 15 15 C 1.37094 * 119.99854 * 179.97438 * 14 12 11 16 16 H 1.08004 * 120.00490 * 359.97438 * 15 14 12 17 17 C 1.38949 * 119.99902 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00100 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00046 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46831 * 90.00414 * 19 17 15 21 21 H 1.48500 * 109.47207 * 209.99981 * 19 17 15 22 22 H 1.48497 * 109.47236 * 330.00150 * 19 17 15 23 23 H 1.09007 * 109.47002 * 60.00965 * 1 2 3 24 24 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47470 * 300.00656 * 1 2 3 26 26 H 1.08000 * 122.45707 * 0.02562 * 4 3 2 27 27 H 1.07997 * 124.42778 * 180.26429 * 5 4 3 28 28 H 0.96996 * 120.00207 * 0.02562 * 10 8 7 29 29 H 1.08999 * 109.47340 * 300.00216 * 11 10 8 30 30 H 1.09007 * 109.47268 * 60.00500 * 11 10 8 31 31 H 0.96995 * 120.00099 * 0.02562 * 14 12 11 32 32 H 0.97003 * 120.00193 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3651 2.4108 -0.0005 5 6 2.1388 3.5002 -0.0010 6 16 3.7922 3.0806 -0.0001 7 6 3.4093 1.3646 0.0005 8 6 4.3567 0.3106 0.0017 9 8 3.9793 -0.8472 0.0019 10 7 5.6752 0.5897 0.0026 11 6 6.6546 -0.5000 0.0045 12 6 8.0471 0.0762 0.0058 13 8 8.2059 1.2787 0.0049 14 7 9.1160 -0.7447 0.0071 15 6 10.3828 -0.2206 0.0078 16 1 10.5243 0.8502 0.0069 17 6 11.4848 -1.0668 0.0096 18 7 11.3128 -2.3697 0.0102 19 14 13.2109 -0.3527 0.0099 20 1 13.6674 -0.1617 1.4100 21 1 14.1324 -1.2847 -0.6883 22 1 13.2053 0.9561 -0.6918 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.2865 2.4659 -0.0005 27 1 1.7661 4.5138 0.0027 28 1 5.9758 1.5119 0.0029 29 1 6.5145 -1.1129 0.8948 30 1 6.5161 -1.1145 -0.8852 31 1 8.9890 -1.7063 0.0067 32 1 12.0821 -2.9605 0.0118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344184717.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:48 Heat of formation + Delta-G solvation = -71.982354 kcal Electronic energy + Delta-G solvation = -19187.711494 eV Core-core repulsion = 15854.865004 eV Total energy + Delta-G solvation = -3332.846490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.31532 -39.09763 -37.95245 -36.09190 -34.36851 -33.58340 -31.36598 -30.55281 -28.05595 -26.75707 -25.00223 -24.15622 -21.25433 -19.88089 -19.49472 -18.70852 -17.97323 -17.00704 -16.28226 -16.06204 -15.43815 -15.13522 -15.11366 -14.93270 -14.31535 -14.04544 -13.87182 -13.78638 -13.22421 -12.89663 -12.70123 -12.16156 -11.84311 -11.75266 -11.59962 -11.29313 -11.09958 -11.09330 -10.43472 -10.28847 -9.72494 -9.60482 -9.03584 -8.65925 -8.59034 -8.21003 -8.06640 -6.48241 -3.90121 0.38622 1.31730 1.65343 2.20521 3.14085 3.24008 3.28971 3.32030 3.49852 3.52647 3.78617 4.14642 4.45323 4.85415 4.87467 4.92744 4.93635 5.20481 5.23220 5.27824 5.43974 5.57338 5.89469 6.03471 6.03838 6.12272 6.74752 7.10246 7.49095 7.87991 7.95569 8.48091 8.54879 9.07808 9.42986 9.91054 10.68727 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.036715 B = 0.003319 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.439855 B = 8433.315142 C = 9175.308566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.271 6.271 3 C 0.183 3.817 4 C -0.215 4.215 5 C -0.205 4.205 6 S 0.244 5.756 7 C -0.319 4.319 8 C 0.591 3.409 9 O -0.531 6.531 10 N -0.710 5.710 11 C 0.111 3.889 12 C 0.429 3.571 13 O -0.597 6.597 14 N -0.549 5.549 15 C -0.304 4.304 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.895 5.895 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.269 1.269 23 H 0.055 0.945 24 H 0.102 0.898 25 H 0.055 0.945 26 H 0.149 0.851 27 H 0.173 0.827 28 H 0.406 0.594 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.396 0.604 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.101 8.493 -0.024 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.182 6.182 3 C 0.122 3.878 4 C -0.249 4.249 5 C -0.343 4.343 6 S 0.510 5.490 7 C -0.439 4.439 8 C 0.378 3.622 9 O -0.410 6.410 10 N -0.365 5.365 11 C -0.016 4.016 12 C 0.215 3.785 13 O -0.484 6.484 14 N -0.184 5.184 15 C -0.434 4.434 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 H 0.073 0.927 24 H 0.121 0.879 25 H 0.073 0.927 26 H 0.166 0.834 27 H 0.191 0.809 28 H 0.243 0.757 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.230 0.770 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.639 8.913 -0.030 20.660 hybrid contribution -0.758 -0.475 0.013 0.895 sum -19.397 8.438 -0.018 21.152 Atomic orbital electron populations 1.23169 0.78592 1.04341 1.01145 1.86352 1.20650 1.24087 1.87113 1.18255 0.90161 0.85446 0.93890 1.20008 1.01959 0.90934 1.11973 1.25097 0.99661 1.03710 1.05861 1.83416 1.02545 0.95444 1.67587 1.22794 0.95354 0.98500 1.27282 1.15497 0.81474 0.87758 0.77438 1.90856 1.79696 1.19991 1.50482 1.45595 1.04764 1.10965 1.75166 1.20938 0.87679 0.89628 1.03384 1.19758 0.85750 0.87558 0.85483 1.90489 1.85817 1.14745 1.57329 1.41787 1.05018 1.08911 1.62684 1.19734 0.81015 0.94466 1.48177 0.87664 1.25323 1.00469 0.95100 0.96850 1.69618 1.32276 1.02212 1.49413 0.85814 0.80991 0.78758 0.78466 1.20290 1.20828 1.19313 0.92669 0.87917 0.92674 0.83383 0.80922 0.75662 0.89711 0.89699 0.77004 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.94 101.05 1.00 1.19 16 2 O -0.27 -3.81 9.36 -36.59 -0.34 -4.15 16 3 C 0.18 2.48 6.70 -40.02 -0.27 2.21 16 4 C -0.21 -2.08 9.17 -41.28 -0.38 -2.46 16 5 C -0.20 -1.78 10.90 29.11 0.32 -1.46 16 6 S 0.24 2.75 22.00 -107.50 -2.37 0.38 16 7 C -0.32 -4.85 6.28 -38.61 -0.24 -5.09 16 8 C 0.59 10.93 7.59 -14.93 -0.11 10.82 16 9 O -0.53 -11.33 15.84 -12.40 -0.20 -11.52 16 10 N -0.71 -13.21 5.52 -64.37 -0.36 -13.56 16 11 C 0.11 2.19 6.15 -5.19 -0.03 2.16 16 12 C 0.43 10.14 7.85 -10.99 -0.09 10.06 16 13 O -0.60 -15.60 15.24 5.54 0.08 -15.52 16 14 N -0.55 -13.89 5.29 -10.96 -0.06 -13.94 16 15 C -0.30 -8.37 9.68 -14.94 -0.14 -8.52 16 16 H 0.11 3.00 7.16 -52.48 -0.38 2.63 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -24.16 13.05 55.50 0.72 -23.44 16 19 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H 0.05 0.35 7.88 -51.93 -0.41 -0.06 16 24 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.35 7.88 -51.93 -0.41 -0.06 16 26 H 0.15 1.00 6.99 -52.49 -0.37 0.63 16 27 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 28 H 0.41 7.36 6.41 -40.82 -0.26 7.10 16 29 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 31 H 0.40 9.64 7.90 -40.82 -0.32 9.31 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -33.70 301.96 -5.99 -39.69 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -2.97 Total: 12.34 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -0.04 Total: 9.48 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.31 Total: -50.94 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.45 Total: -31.19 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.37 Total: 0.38 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.70 -5.99 -39.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344184717.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.287 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds