Wall clock time and date at job start Wed Apr 15 2020 11:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35788 * 116.99688 * 2 1 4 4 C 1.38014 * 123.47394 * 359.97438 * 3 2 1 5 5 C 1.33617 * 115.08900 * 180.02562 * 4 3 2 6 6 S 1.70578 * 111.14234 * 359.97438 * 5 4 3 7 7 C 1.37271 * 123.46693 * 179.97438 * 3 2 1 8 8 C 1.41717 * 125.47925 * 359.96896 * 7 3 2 9 9 O 1.21776 * 120.00124 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99910 * 180.02562 * 8 7 3 11 11 C 1.46505 * 119.99816 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47203 * 180.02562 * 11 10 8 13 13 O 1.21297 * 119.99931 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00105 * 180.02562 * 12 11 10 15 15 C 1.37094 * 119.99854 * 179.97438 * 14 12 11 16 16 H 1.08004 * 120.00490 * 359.97438 * 15 14 12 17 17 C 1.38949 * 119.99902 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00100 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00046 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46831 * 90.00414 * 19 17 15 21 21 H 1.48500 * 109.47207 * 209.99981 * 19 17 15 22 22 H 1.48497 * 109.47236 * 330.00150 * 19 17 15 23 23 H 1.09007 * 109.47002 * 60.00965 * 1 2 3 24 24 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47470 * 300.00656 * 1 2 3 26 26 H 1.08000 * 122.45707 * 0.02562 * 4 3 2 27 27 H 1.07997 * 124.42778 * 180.26429 * 5 4 3 28 28 H 0.96996 * 120.00207 * 0.02562 * 10 8 7 29 29 H 1.08999 * 109.47340 * 300.00216 * 11 10 8 30 30 H 1.09007 * 109.47268 * 60.00500 * 11 10 8 31 31 H 0.96995 * 120.00099 * 0.02562 * 14 12 11 32 32 H 0.97003 * 120.00193 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3651 2.4108 -0.0005 5 6 2.1388 3.5002 -0.0010 6 16 3.7922 3.0806 -0.0001 7 6 3.4093 1.3646 0.0005 8 6 4.3567 0.3106 0.0017 9 8 3.9793 -0.8472 0.0019 10 7 5.6752 0.5897 0.0026 11 6 6.6546 -0.5000 0.0045 12 6 8.0471 0.0762 0.0058 13 8 8.2059 1.2787 0.0049 14 7 9.1160 -0.7447 0.0071 15 6 10.3828 -0.2206 0.0078 16 1 10.5243 0.8502 0.0069 17 6 11.4848 -1.0668 0.0096 18 7 11.3128 -2.3697 0.0102 19 14 13.2109 -0.3527 0.0099 20 1 13.6674 -0.1617 1.4100 21 1 14.1324 -1.2847 -0.6883 22 1 13.2053 0.9561 -0.6918 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.2865 2.4659 -0.0005 27 1 1.7661 4.5138 0.0027 28 1 5.9758 1.5119 0.0029 29 1 6.5145 -1.1129 0.8948 30 1 6.5161 -1.1145 -0.8852 31 1 8.9890 -1.7063 0.0067 32 1 12.0821 -2.9605 0.0118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344184717.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:47 Heat of formation + Delta-G solvation = -97.529151 kcal Electronic energy + Delta-G solvation = -19188.819286 eV Core-core repulsion = 15854.865004 eV Total energy + Delta-G solvation = -3333.954282 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.42276 -40.55486 -39.65696 -36.95724 -36.24684 -35.28523 -33.39120 -31.62317 -29.38335 -27.78502 -26.50837 -25.44103 -22.49000 -21.44763 -20.65017 -20.19372 -19.79034 -18.04577 -17.72002 -17.05202 -16.96287 -16.61230 -16.55433 -16.28709 -15.87780 -15.44561 -15.42831 -14.76597 -14.62452 -13.97934 -13.91921 -13.56142 -13.44489 -13.43259 -12.90277 -12.51647 -12.45563 -12.11864 -12.01911 -11.89195 -11.57424 -11.16586 -10.57758 -10.31856 -10.10254 -9.81362 -9.10641 -8.51001 -6.01539 -0.52681 0.42482 0.84904 1.32357 1.36723 1.43099 1.56205 1.88439 2.05652 2.21252 2.33391 2.51234 3.10424 3.15905 3.70208 4.02753 4.16199 4.25609 4.32738 4.40169 4.40916 4.44248 4.63321 4.73115 4.86410 5.10399 5.22229 5.38319 5.91134 6.26405 6.44409 6.49778 7.02537 7.12773 7.42792 7.92832 8.66021 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.036715 B = 0.003319 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.439855 B = 8433.315142 C = 9175.308566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.308 6.308 3 C 0.190 3.810 4 C -0.222 4.222 5 C -0.168 4.168 6 S 0.243 5.757 7 C -0.380 4.380 8 C 0.591 3.409 9 O -0.572 6.572 10 N -0.713 5.713 11 C 0.123 3.877 12 C 0.433 3.567 13 O -0.622 6.622 14 N -0.557 5.557 15 C -0.338 4.338 16 H 0.088 0.912 17 C -0.011 4.011 18 N -0.917 5.917 19 Si 0.999 3.001 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.269 1.269 23 H 0.075 0.925 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.185 0.815 27 H 0.217 0.783 28 H 0.408 0.592 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.399 0.601 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.574 10.129 -0.012 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.220 6.220 3 C 0.128 3.872 4 C -0.254 4.254 5 C -0.306 4.306 6 S 0.508 5.492 7 C -0.499 4.499 8 C 0.382 3.618 9 O -0.455 6.455 10 N -0.367 5.367 11 C -0.005 4.005 12 C 0.220 3.780 13 O -0.510 6.510 14 N -0.193 5.193 15 C -0.467 4.467 16 H 0.106 0.894 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.822 3.178 20 H -0.195 1.195 21 H -0.196 1.196 22 H -0.193 1.193 23 H 0.094 0.906 24 H 0.130 0.870 25 H 0.094 0.906 26 H 0.202 0.798 27 H 0.234 0.766 28 H 0.246 0.754 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.233 0.767 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.139 10.542 -0.017 22.732 hybrid contribution -0.477 -0.942 0.010 1.056 sum -20.617 9.601 -0.008 22.742 Atomic orbital electron populations 1.23517 0.75761 1.05746 1.03125 1.86299 1.23786 1.25217 1.86688 1.18717 0.89964 0.86618 0.91880 1.20261 1.03695 0.89344 1.12099 1.25629 0.97666 1.05469 1.01836 1.83392 1.04877 0.92860 1.68117 1.22677 0.95605 0.99743 1.31868 1.15929 0.81464 0.88242 0.76143 1.90808 1.80170 1.21812 1.52713 1.45599 1.04878 1.10577 1.75678 1.20772 0.85514 0.90003 1.04211 1.20332 0.86811 0.87120 0.83755 1.90461 1.86575 1.15959 1.58049 1.41829 1.04997 1.09142 1.63295 1.19769 0.82465 0.94035 1.50453 0.89438 1.26165 1.03916 0.95384 0.95687 1.69688 1.33654 1.03107 1.49197 0.84841 0.76157 0.78070 0.78751 1.19495 1.19625 1.19329 0.90601 0.87048 0.90607 0.79795 0.76575 0.75450 0.88841 0.88831 0.76702 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.94 113.37 1.13 1.31 16 2 O -0.31 -8.48 9.36 -74.43 -0.70 -9.18 16 3 C 0.19 4.93 6.70 21.99 0.15 5.08 16 4 C -0.22 -3.52 9.17 21.17 0.19 -3.32 16 5 C -0.17 -2.25 10.90 66.77 0.73 -1.52 16 6 S 0.24 5.14 22.00 -56.49 -1.24 3.89 16 7 C -0.38 -11.55 6.28 22.90 0.14 -11.41 16 8 C 0.59 22.60 7.59 85.10 0.65 23.25 16 9 O -0.57 -25.39 15.84 12.16 0.19 -25.20 16 10 N -0.71 -27.34 5.52 -475.75 -2.62 -29.96 16 11 C 0.12 4.97 6.15 85.63 0.53 5.50 16 12 C 0.43 21.03 7.85 87.66 0.69 21.72 16 13 O -0.62 -33.37 15.24 -3.08 -0.05 -33.42 16 14 N -0.56 -28.94 5.29 -306.98 -1.62 -30.56 16 15 C -0.34 -18.98 9.68 84.04 0.81 -18.17 16 16 H 0.09 5.14 7.16 -2.91 -0.02 5.12 16 17 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 18 N -0.92 -49.50 13.05 21.66 0.28 -49.21 16 19 Si 1.00 42.22 29.55 68.60 2.03 44.24 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 23 H 0.08 0.75 7.88 -2.38 -0.02 0.73 16 24 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.08 0.75 7.88 -2.39 -0.02 0.73 16 26 H 0.18 1.54 6.99 -2.91 -0.02 1.52 16 27 H 0.22 1.00 8.06 -2.91 -0.02 0.97 16 28 H 0.41 15.25 6.41 -92.71 -0.59 14.66 16 29 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 30 H 0.09 3.62 8.14 -2.38 -0.02 3.60 16 31 H 0.40 19.94 7.90 -92.71 -0.73 19.20 16 32 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -75.02 301.96 1.62 -73.40 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -0.14 Total: 33.67 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 5.48 Total: 22.32 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -3.96 Total: -109.74 kcal Atomic # 8 Polarization: -67.24 SS G_CDS: -0.55 Total: -67.79 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 5.14 SS G_CDS: -1.24 Total: 3.89 kcal Total: -75.02 1.62 -73.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344184717.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.126 kcal (2) G-P(sol) polarization free energy of solvation -75.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds