Wall clock time and date at job start Wed Apr 15 2020 11:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36869 * 120.00071 * 2 1 4 4 H 1.08006 * 119.99803 * 137.57130 * 3 2 1 5 5 C 1.39052 * 120.00091 * 317.58130 * 3 2 1 6 6 N 1.31363 * 120.00027 * 44.64780 * 5 3 2 7 7 Si 1.86800 * 119.99663 * 224.64426 * 5 3 2 8 8 H 1.48499 * 109.47513 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47134 * 120.00121 * 7 5 3 10 10 H 1.48502 * 109.46884 * 239.99896 * 7 5 3 11 11 C 1.34779 * 119.99796 * 180.02562 * 2 1 3 12 12 O 1.21593 * 119.99826 * 187.78024 * 11 2 1 13 13 C 1.47718 * 120.00289 * 7.77833 * 11 2 1 14 14 C 1.39646 * 120.15167 * 138.99443 * 13 11 2 15 15 C 1.37936 * 119.84864 * 180.02562 * 14 13 11 16 16 C 1.38382 * 120.14869 * 0.02562 * 15 14 13 17 17 S 1.76203 * 119.84574 * 179.97438 * 16 15 14 18 18 N 1.65597 * 107.21557 * 90.00195 * 17 16 15 19 19 O 1.42097 * 106.40143 * 203.54243 * 17 16 15 20 20 O 1.42102 * 106.40412 * 336.46359 * 17 16 15 21 21 C 1.38371 * 120.30564 * 0.23565 * 16 15 14 22 22 C 1.37937 * 120.15361 * 359.48799 * 21 16 15 23 23 H 1.09001 * 109.46413 * 278.64752 * 1 2 3 24 24 H 1.08995 * 109.47679 * 38.64907 * 1 2 3 25 25 H 1.08997 * 109.47103 * 158.65601 * 1 2 3 26 26 H 0.97000 * 119.99954 * 180.02562 * 6 5 3 27 27 H 1.07996 * 120.07524 * 359.97438 * 14 13 11 28 28 H 1.08003 * 119.92797 * 179.97438 * 15 14 13 29 29 H 0.97001 * 120.00067 * 150.00577 * 18 17 16 30 30 H 0.96994 * 120.00296 * 329.99895 * 18 17 16 31 31 H 1.08000 * 119.92382 * 179.72294 * 21 16 15 32 32 H 1.07993 * 120.07976 * 180.23486 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.0173 1.3077 0.6311 5 6 1.7272 2.2319 -0.8123 6 7 0.4515 2.5383 -0.8788 7 14 2.9740 3.2023 -1.8089 8 1 4.3349 2.6629 -1.5594 9 1 2.6519 3.0852 -3.2537 10 1 2.9266 4.6306 -1.4053 11 6 2.1389 -1.1672 -0.0005 12 8 3.3464 -1.1722 0.1420 13 6 1.4105 -2.4406 -0.1742 14 6 1.9431 -3.4490 -0.9802 15 6 1.2574 -4.6353 -1.1385 16 6 0.0441 -4.8272 -0.5011 17 16 -0.8254 -6.3455 -0.7094 18 7 -0.3136 -7.3713 0.4857 19 8 -2.1921 -6.0655 -0.4398 20 8 -0.3733 -6.9018 -1.9364 21 6 -0.4919 -3.8302 0.2946 22 6 0.1858 -2.6411 0.4662 23 1 -0.3632 0.1545 1.0160 24 1 -0.3634 0.8025 -0.6418 25 1 -0.3633 -0.9572 -0.3740 26 1 0.1569 3.2682 -1.4457 27 1 2.8892 -3.3000 -1.4792 28 1 1.6678 -5.4159 -1.7619 29 1 -0.9148 -8.0479 0.8344 30 1 0.5874 -7.2956 0.8369 31 1 -1.4414 -3.9848 0.7856 32 1 -0.2319 -1.8652 1.0906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344572725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:51 Heat of formation + Delta-G solvation = -57.279860 kcal Electronic energy + Delta-G solvation = -19927.292230 eV Core-core repulsion = 16595.083288 eV Total energy + Delta-G solvation = -3332.208942 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.70255 -37.64642 -37.20025 -35.87856 -34.90083 -33.34575 -32.42553 -31.03217 -30.89291 -26.56560 -25.31929 -23.22824 -22.58977 -19.85048 -19.53537 -18.34434 -17.48061 -17.28659 -16.57475 -16.45766 -15.55470 -15.15405 -14.70328 -14.51248 -14.37819 -13.93239 -13.55563 -13.33858 -12.83320 -12.45384 -12.25621 -12.14530 -12.04465 -11.99888 -11.79856 -11.51824 -11.13149 -10.95155 -10.82437 -10.60567 -10.45436 -10.33938 -9.16085 -8.87610 -8.76225 -8.60222 -7.86061 -6.85023 -4.04278 0.33377 0.73438 1.44847 2.97259 3.06615 3.19388 3.26962 3.36932 3.65813 3.91339 4.11235 4.44338 4.46947 4.75373 4.95451 4.97098 5.40697 5.43709 5.56749 5.77685 5.80812 6.02817 6.11452 6.21004 6.29537 6.50004 6.59957 6.84807 6.92521 7.01462 7.43039 8.09626 8.29882 8.92372 9.10726 9.77283 10.17039 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.036254 B = 0.004062 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.148686 B = 6892.157862 C = 7128.775456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.422 5.422 3 C -0.348 4.348 4 H 0.101 0.899 5 C 0.077 3.923 6 N -0.814 5.814 7 Si 0.889 3.111 8 H -0.259 1.259 9 H -0.275 1.275 10 H -0.280 1.280 11 C 0.468 3.532 12 O -0.576 6.576 13 C -0.028 4.028 14 C -0.105 4.105 15 C -0.028 4.028 16 C -0.685 4.685 17 S 2.706 3.294 18 N -1.250 6.250 19 O -0.967 6.967 20 O -0.966 6.966 21 C -0.025 4.025 22 C -0.130 4.130 23 H 0.041 0.959 24 H 0.118 0.882 25 H 0.051 0.949 26 H 0.276 0.724 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.418 0.582 30 H 0.417 0.583 31 H 0.141 0.859 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 -14.208 2.020 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.139 5.139 3 C -0.473 4.473 4 H 0.118 0.882 5 C -0.134 4.134 6 N -0.446 5.446 7 Si 0.712 3.288 8 H -0.183 1.183 9 H -0.200 1.200 10 H -0.206 1.206 11 C 0.257 3.743 12 O -0.462 6.462 13 C -0.033 4.033 14 C -0.126 4.126 15 C -0.048 4.048 16 C -0.775 4.775 17 S 2.795 3.205 18 N -0.923 5.923 19 O -0.957 6.957 20 O -0.956 6.956 21 C -0.044 4.044 22 C -0.149 4.149 23 H 0.059 0.941 24 H 0.135 0.865 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.156 0.844 28 H 0.159 0.841 29 H 0.248 0.752 30 H 0.244 0.756 31 H 0.158 0.842 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.616 -14.069 1.223 14.858 hybrid contribution 0.933 0.889 0.179 1.302 sum -3.683 -13.180 1.403 13.756 Atomic orbital electron populations 1.23028 0.82258 1.03181 1.02156 1.43399 1.05192 1.04704 1.60641 1.19178 1.12509 0.89844 1.25773 0.88166 1.25589 0.95792 0.96801 0.95248 1.70023 1.16593 1.25813 1.32137 0.86554 0.83453 0.78474 0.80314 1.18314 1.20048 1.20597 1.18045 0.87232 0.83085 0.85934 1.90641 1.13747 1.86403 1.55410 1.20820 0.93730 0.95148 0.93572 1.21288 1.00420 0.92386 0.98462 1.20823 0.91684 0.97620 0.94651 1.30429 1.11178 1.21580 1.14271 1.01324 0.73083 0.73104 0.72946 1.53166 1.25973 1.51915 1.61285 1.93582 1.32413 1.84874 1.84849 1.93597 1.82138 1.77259 1.42573 1.20797 0.98273 0.91854 0.93503 1.21824 0.94664 0.97713 1.00732 0.94066 0.86470 0.93061 0.91314 0.84424 0.84141 0.75225 0.75567 0.84156 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 8.58 59.85 0.51 1.29 16 2 N -0.42 -10.51 2.99 -123.32 -0.37 -10.88 16 3 C -0.35 -9.37 8.73 -15.00 -0.13 -9.50 16 4 H 0.10 2.85 7.94 -52.48 -0.42 2.43 16 5 C 0.08 1.95 5.32 -17.45 -0.09 1.86 16 6 N -0.81 -20.09 10.81 55.50 0.60 -19.49 16 7 Si 0.89 19.57 29.69 -169.99 -5.05 14.52 16 8 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 11 C 0.47 11.32 7.27 -12.39 -0.09 11.23 16 12 O -0.58 -15.84 16.85 5.28 0.09 -15.75 16 13 C -0.03 -0.55 5.30 -104.97 -0.56 -1.10 16 14 C -0.11 -1.78 9.65 -39.17 -0.38 -2.16 16 15 C -0.03 -0.39 9.50 -39.64 -0.38 -0.77 16 16 C -0.69 -8.95 5.98 -39.48 -0.24 -9.19 16 17 S 2.71 30.04 6.28 -107.50 -0.67 29.36 16 18 N -1.25 -8.50 9.52 60.35 0.57 -7.92 16 19 O -0.97 -13.38 17.26 -57.17 -0.99 -14.36 16 20 O -0.97 -13.57 17.27 -57.17 -0.99 -14.55 16 21 C -0.02 -0.34 9.50 -39.64 -0.38 -0.72 16 22 C -0.13 -2.12 7.36 -39.16 -0.29 -2.41 16 23 H 0.04 0.82 7.79 -51.93 -0.40 0.42 16 24 H 0.12 2.72 5.14 -51.93 -0.27 2.45 16 25 H 0.05 0.96 4.58 -51.93 -0.24 0.72 16 26 H 0.28 6.29 8.31 -40.82 -0.34 5.95 16 27 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 28 H 0.14 1.59 7.60 -52.48 -0.40 1.19 16 29 H 0.42 2.04 8.96 -34.47 -0.31 1.73 16 30 H 0.42 2.07 8.96 -34.47 -0.31 1.76 16 31 H 0.14 1.60 7.60 -52.49 -0.40 1.20 16 32 H 0.14 2.25 5.74 -52.49 -0.30 1.95 16 LS Contribution 289.88 15.07 4.37 4.37 Total: -1.00 -34.18 289.88 -7.04 -41.22 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -2.60 Total: 4.95 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.01 Total: -11.48 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.81 Total: -38.29 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -1.89 Total: -44.67 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.05 Total: 14.52 kcal Atomic # 16 Polarization: 30.04 SS G_CDS: -0.67 Total: 29.36 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.18 -7.04 -41.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344572725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.055 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds