Wall clock time and date at job start Wed Apr 15 2020 11:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36869 * 120.00071 * 2 1 4 4 H 1.08006 * 119.99803 * 137.57130 * 3 2 1 5 5 C 1.39052 * 120.00091 * 317.58130 * 3 2 1 6 6 N 1.31363 * 120.00027 * 44.64780 * 5 3 2 7 7 Si 1.86800 * 119.99663 * 224.64426 * 5 3 2 8 8 H 1.48499 * 109.47513 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47134 * 120.00121 * 7 5 3 10 10 H 1.48502 * 109.46884 * 239.99896 * 7 5 3 11 11 C 1.34779 * 119.99796 * 180.02562 * 2 1 3 12 12 O 1.21593 * 119.99826 * 187.78024 * 11 2 1 13 13 C 1.47718 * 120.00289 * 7.77833 * 11 2 1 14 14 C 1.39646 * 120.15167 * 138.99443 * 13 11 2 15 15 C 1.37936 * 119.84864 * 180.02562 * 14 13 11 16 16 C 1.38382 * 120.14869 * 0.02562 * 15 14 13 17 17 S 1.76203 * 119.84574 * 179.97438 * 16 15 14 18 18 N 1.65597 * 107.21557 * 90.00195 * 17 16 15 19 19 O 1.42097 * 106.40143 * 203.54243 * 17 16 15 20 20 O 1.42102 * 106.40412 * 336.46359 * 17 16 15 21 21 C 1.38371 * 120.30564 * 0.23565 * 16 15 14 22 22 C 1.37937 * 120.15361 * 359.48799 * 21 16 15 23 23 H 1.09001 * 109.46413 * 278.64752 * 1 2 3 24 24 H 1.08995 * 109.47679 * 38.64907 * 1 2 3 25 25 H 1.08997 * 109.47103 * 158.65601 * 1 2 3 26 26 H 0.97000 * 119.99954 * 180.02562 * 6 5 3 27 27 H 1.07996 * 120.07524 * 359.97438 * 14 13 11 28 28 H 1.08003 * 119.92797 * 179.97438 * 15 14 13 29 29 H 0.97001 * 120.00067 * 150.00577 * 18 17 16 30 30 H 0.96994 * 120.00296 * 329.99895 * 18 17 16 31 31 H 1.08000 * 119.92382 * 179.72294 * 21 16 15 32 32 H 1.07993 * 120.07976 * 180.23486 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.0173 1.3077 0.6311 5 6 1.7272 2.2319 -0.8123 6 7 0.4515 2.5383 -0.8788 7 14 2.9740 3.2023 -1.8089 8 1 4.3349 2.6629 -1.5594 9 1 2.6519 3.0852 -3.2537 10 1 2.9266 4.6306 -1.4053 11 6 2.1389 -1.1672 -0.0005 12 8 3.3464 -1.1722 0.1420 13 6 1.4105 -2.4406 -0.1742 14 6 1.9431 -3.4490 -0.9802 15 6 1.2574 -4.6353 -1.1385 16 6 0.0441 -4.8272 -0.5011 17 16 -0.8254 -6.3455 -0.7094 18 7 -0.3136 -7.3713 0.4857 19 8 -2.1921 -6.0655 -0.4398 20 8 -0.3733 -6.9018 -1.9364 21 6 -0.4919 -3.8302 0.2946 22 6 0.1858 -2.6411 0.4662 23 1 -0.3632 0.1545 1.0160 24 1 -0.3634 0.8025 -0.6418 25 1 -0.3633 -0.9572 -0.3740 26 1 0.1569 3.2682 -1.4457 27 1 2.8892 -3.3000 -1.4792 28 1 1.6678 -5.4159 -1.7619 29 1 -0.9148 -8.0479 0.8344 30 1 0.5874 -7.2956 0.8369 31 1 -1.4414 -3.9848 0.7856 32 1 -0.2319 -1.8652 1.0906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344572725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:51 Heat of formation + Delta-G solvation = -85.004432 kcal Electronic energy + Delta-G solvation = -19928.494458 eV Core-core repulsion = 16595.083288 eV Total energy + Delta-G solvation = -3333.411170 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.23990 -39.21862 -38.22136 -36.90164 -36.81706 -34.24322 -33.99711 -32.44283 -32.18189 -28.34524 -27.03660 -24.73498 -23.83742 -21.39742 -20.53900 -19.40605 -19.06337 -18.32316 -18.15246 -17.50650 -16.88279 -16.66882 -16.26987 -16.11924 -15.68876 -15.47929 -15.05204 -14.61810 -14.16893 -14.15342 -13.68306 -13.62978 -13.21995 -13.19463 -13.16587 -13.07572 -12.65683 -12.48839 -12.19455 -12.15307 -11.98572 -11.28823 -10.74200 -10.62493 -10.32711 -10.11075 -9.74980 -8.74870 -6.05202 -0.68649 -0.44515 0.21882 1.24220 1.37745 1.49807 1.78644 2.13175 2.24185 2.44993 2.60344 2.79398 2.98997 3.41628 3.76098 3.83172 3.89658 4.19772 4.38937 4.48298 4.57788 4.79559 4.87142 4.93217 4.98650 5.17343 5.29319 5.32709 5.55685 5.68784 6.10095 6.40793 6.41332 6.99607 7.23951 7.88851 8.28200 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.036254 B = 0.004062 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.148686 B = 6892.157862 C = 7128.775456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.437 5.437 3 C -0.399 4.399 4 H 0.066 0.934 5 C 0.055 3.945 6 N -0.823 5.823 7 Si 0.948 3.052 8 H -0.280 1.280 9 H -0.265 1.265 10 H -0.262 1.262 11 C 0.462 3.538 12 O -0.624 6.624 13 C -0.060 4.060 14 C -0.115 4.115 15 C -0.019 4.019 16 C -0.673 4.673 17 S 2.742 3.258 18 N -1.231 6.231 19 O -0.988 6.988 20 O -0.989 6.989 21 C -0.017 4.017 22 C -0.131 4.131 23 H 0.049 0.951 24 H 0.101 0.899 25 H 0.078 0.922 26 H 0.286 0.714 27 H 0.131 0.869 28 H 0.171 0.829 29 H 0.431 0.569 30 H 0.430 0.570 31 H 0.172 0.828 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.989 -16.415 1.558 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.154 5.154 3 C -0.524 4.524 4 H 0.084 0.916 5 C -0.157 4.157 6 N -0.455 5.455 7 Si 0.770 3.230 8 H -0.206 1.206 9 H -0.190 1.190 10 H -0.187 1.187 11 C 0.253 3.747 12 O -0.513 6.513 13 C -0.064 4.064 14 C -0.135 4.135 15 C -0.038 4.038 16 C -0.759 4.759 17 S 2.828 3.172 18 N -0.910 5.910 19 O -0.978 6.978 20 O -0.979 6.979 21 C -0.036 4.036 22 C -0.150 4.150 23 H 0.067 0.933 24 H 0.119 0.881 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.149 0.851 28 H 0.189 0.811 29 H 0.265 0.735 30 H 0.260 0.740 31 H 0.190 0.810 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.317 -16.251 0.772 17.453 hybrid contribution 1.377 1.324 0.367 1.945 sum -4.940 -14.927 1.139 15.764 Atomic orbital electron populations 1.23006 0.80427 1.04051 1.02451 1.43544 1.06408 1.04391 1.61026 1.18955 1.13013 0.91890 1.28545 0.91590 1.26073 0.97369 0.97271 0.94982 1.70008 1.17187 1.26264 1.32010 0.85685 0.80147 0.78000 0.79201 1.20553 1.18960 1.18731 1.18817 0.87054 0.84579 0.84274 1.90577 1.16023 1.87543 1.57136 1.20506 0.95280 0.93703 0.96864 1.21371 1.00660 0.93044 0.98383 1.21111 0.91547 0.96853 0.94298 1.30926 1.10327 1.22549 1.12096 1.00295 0.71880 0.72239 0.72777 1.52710 1.26944 1.51023 1.60371 1.93560 1.33817 1.85132 1.85260 1.93583 1.82379 1.77242 1.44650 1.21135 0.98953 0.90571 0.92981 1.21865 0.93609 0.99074 1.00470 0.93251 0.88091 0.90365 0.90271 0.85063 0.81143 0.73540 0.74040 0.81036 0.83423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.84 8.58 127.77 1.10 2.94 16 2 N -0.44 -22.68 2.99 -662.33 -1.98 -24.67 16 3 C -0.40 -22.68 8.73 84.10 0.73 -21.95 16 4 H 0.07 4.08 7.94 -2.91 -0.02 4.05 16 5 C 0.05 2.82 5.32 84.96 0.45 3.27 16 6 N -0.82 -40.95 10.81 21.68 0.23 -40.72 16 7 Si 0.95 41.15 29.69 68.60 2.04 43.19 16 8 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 9 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 10 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 11 C 0.46 23.40 7.27 86.75 0.63 24.03 16 12 O -0.62 -36.41 16.85 -4.01 -0.07 -36.48 16 13 C -0.06 -2.32 5.30 -20.09 -0.11 -2.43 16 14 C -0.11 -3.81 9.65 22.54 0.22 -3.59 16 15 C -0.02 -0.48 9.50 22.23 0.21 -0.27 16 16 C -0.67 -15.17 5.98 22.34 0.13 -15.04 16 17 S 2.74 49.91 6.28 -56.49 -0.35 49.56 16 18 N -1.23 -11.34 9.52 37.02 0.35 -10.99 16 19 O -0.99 -23.40 17.26 -128.00 -2.21 -25.61 16 20 O -0.99 -24.08 17.27 -128.00 -2.21 -26.29 16 21 C -0.02 -0.42 9.50 22.23 0.21 -0.21 16 22 C -0.13 -4.09 7.36 22.54 0.17 -3.92 16 23 H 0.05 2.00 7.79 -2.39 -0.02 1.98 16 24 H 0.10 4.74 5.14 -2.39 -0.01 4.73 16 25 H 0.08 2.89 4.58 -2.39 -0.01 2.88 16 26 H 0.29 12.91 8.31 -92.71 -0.77 12.14 16 27 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 28 H 0.17 3.24 7.60 -2.91 -0.02 3.21 16 29 H 0.43 2.29 8.96 -96.75 -0.87 1.42 16 30 H 0.43 2.33 8.96 -96.75 -0.87 1.47 16 31 H 0.17 3.15 7.60 -2.91 -0.02 3.12 16 32 H 0.15 4.45 5.74 -2.91 -0.02 4.43 16 Total: -1.00 -76.86 289.88 -0.98 -77.85 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -0.53 Total: 11.33 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 3.75 Total: -17.18 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -1.39 Total: -76.37 kcal Atomic # 8 Polarization: -83.90 SS G_CDS: -4.49 Total: -88.38 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.04 Total: 43.19 kcal Atomic # 16 Polarization: 49.91 SS G_CDS: -0.35 Total: 49.56 kcal Total: -76.86 -0.98 -77.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344572725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.159 kcal (2) G-P(sol) polarization free energy of solvation -76.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds