Wall clock time and date at job start Wed Apr 15 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34796 * 116.99752 * 179.97438 * 3 2 1 5 5 O 1.21552 * 120.00604 * 0.02562 * 4 3 2 6 6 C 1.47113 * 119.99946 * 179.97438 * 4 3 2 7 7 C 1.35287 * 123.16033 * 179.73015 * 6 4 3 8 8 S 1.70937 * 108.82310 * 179.87471 * 7 6 4 9 9 C 1.70760 * 91.13957 * 0.33169 * 8 7 6 10 10 C 1.50697 * 124.71270 * 179.83120 * 9 8 7 11 11 N 1.46500 * 109.46893 * 269.97417 * 10 9 8 12 12 C 1.34782 * 119.99975 * 179.97438 * 11 10 9 13 13 O 1.21685 * 119.99821 * 359.97438 * 12 11 10 14 14 C 1.46382 * 119.99796 * 179.97438 * 12 11 10 15 15 H 1.07998 * 120.00294 * 0.02562 * 14 12 11 16 16 C 1.40042 * 119.99552 * 179.97438 * 14 12 11 17 17 N 1.30670 * 120.00561 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99518 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47118 * 90.00357 * 18 16 14 20 20 H 1.48505 * 109.46867 * 209.99823 * 18 16 14 21 21 H 1.48498 * 109.47443 * 329.99843 * 18 16 14 22 22 N 1.28625 * 110.58148 * 359.80532 * 9 8 7 23 23 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 26 26 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 28 28 H 1.08004 * 125.58355 * 0.02562 * 7 6 4 29 29 H 1.09001 * 109.47473 * 29.97001 * 10 9 8 30 30 H 1.08994 * 109.47602 * 149.97529 * 10 9 8 31 31 H 0.97002 * 120.00229 * 0.02562 * 11 10 9 32 32 H 0.97001 * 120.00528 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3503 1.5457 0.0005 5 8 4.0908 0.5818 0.0005 6 6 3.9125 2.9051 0.0000 7 6 5.2419 3.1561 0.0058 8 16 5.4837 4.8483 -0.0006 9 6 3.7984 5.1234 -0.0008 10 6 3.1511 6.4843 -0.0019 11 7 2.9408 6.9261 1.3790 12 6 2.3720 8.1231 1.6244 13 8 2.0335 8.8370 0.6989 14 6 2.1614 8.5642 3.0041 15 1 2.4621 7.9308 3.8255 16 6 1.5708 9.8082 3.2590 17 7 1.2073 10.5749 2.2653 18 14 1.3027 10.3714 5.0198 19 1 2.4965 11.1211 5.4869 20 1 0.1093 11.2531 5.0811 21 1 1.0891 9.1880 5.8911 22 7 3.1581 4.0079 -0.0004 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 6.0224 2.4096 0.0110 29 1 3.7989 7.1944 -0.5158 30 1 2.1916 6.4298 -0.5160 31 1 3.2116 6.3574 2.1167 32 1 0.7986 11.4367 2.4418 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358655083.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:54 Heat of formation + Delta-G solvation = -82.404921 kcal Electronic energy + Delta-G solvation = -18970.581770 eV Core-core repulsion = 15637.283324 eV Total energy + Delta-G solvation = -3333.298446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85007 -39.41711 -37.33163 -36.72299 -33.76508 -32.41124 -31.89719 -30.69686 -27.70214 -26.36340 -25.34178 -23.09432 -21.66004 -20.06153 -19.79342 -19.12794 -17.49475 -16.87404 -16.76341 -16.54150 -15.44705 -15.18132 -14.82652 -14.35470 -14.13989 -13.83416 -13.57996 -13.17549 -13.01200 -12.76574 -12.21025 -12.11601 -12.03162 -11.78008 -11.51014 -11.20756 -10.96289 -10.87202 -10.70454 -10.51974 -10.26873 -9.84644 -9.79372 -9.17359 -8.89079 -7.70194 -7.67376 -6.23497 -4.69206 0.27808 1.07652 1.45492 1.60960 2.57719 2.99777 3.12815 3.20071 3.23633 3.86309 4.09182 4.53396 4.63998 4.72608 4.77305 4.89510 4.93243 5.02655 5.04331 5.40892 5.58175 5.58736 5.71953 5.80584 6.07475 6.19571 6.21521 7.27029 7.39738 7.67527 7.78358 7.93505 8.25726 8.97938 9.40298 10.52658 10.70618 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.018918 B = 0.003711 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.744544 B = 7543.850877 C = 8375.558650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.332 6.332 4 C 0.552 3.448 5 O -0.507 6.507 6 C 0.019 3.981 7 C -0.231 4.231 8 S 0.248 5.752 9 C 0.029 3.971 10 C 0.207 3.793 11 N -0.761 5.761 12 C 0.557 3.443 13 O -0.577 6.577 14 C -0.542 4.542 15 H 0.069 0.931 16 C 0.088 3.912 17 N -0.766 5.766 18 Si 0.909 3.091 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.265 1.265 22 N -0.415 5.415 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.191 0.809 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.383 0.617 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.930 -16.707 -3.591 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.248 6.248 4 C 0.394 3.606 5 O -0.396 6.396 6 C -0.115 4.115 7 C -0.373 4.373 8 S 0.507 5.493 9 C -0.251 4.251 10 C 0.079 3.921 11 N -0.419 5.419 12 C 0.362 3.638 13 O -0.460 6.460 14 C -0.579 4.579 15 H 0.087 0.913 16 C -0.132 4.132 17 N -0.395 5.395 18 Si 0.734 3.266 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.189 1.189 22 N -0.130 5.130 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.208 0.792 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.214 0.786 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.038 -15.643 -4.374 17.329 hybrid contribution -0.340 -1.252 1.214 1.777 sum 5.697 -16.894 -3.160 18.107 Atomic orbital electron populations 1.21806 0.92300 1.02847 1.04058 1.23105 0.95739 0.79924 1.02524 1.86730 1.22755 1.32039 1.83247 1.19821 0.81004 0.87442 0.72323 1.90860 1.60764 1.41220 1.46785 1.19276 0.89106 0.91682 1.11471 1.26709 1.00381 1.03362 1.06888 1.83111 1.08745 0.95350 1.62142 1.27620 0.94578 0.99211 1.03738 1.19471 0.99755 0.83810 0.89071 1.46239 1.69723 1.22349 1.03599 1.18252 0.76756 0.78104 0.90730 1.90615 1.54695 1.54325 1.46335 1.20842 1.42875 1.03448 0.90712 0.91300 1.25701 0.93312 0.95957 0.98256 1.70009 1.29085 1.08520 1.31871 0.86346 0.78303 0.79114 0.82851 1.19705 1.20412 1.18888 1.67067 1.36502 0.96564 1.12909 0.90216 0.91154 0.91253 0.91170 0.91117 0.79206 0.90562 0.89709 0.78583 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 37.16 0.38 -0.88 16 2 C 0.06 0.63 6.20 37.16 0.23 0.86 16 3 O -0.33 -4.75 10.16 -40.75 -0.41 -5.17 16 4 C 0.55 8.20 7.94 34.33 0.27 8.47 16 5 O -0.51 -7.79 16.50 -19.31 -0.32 -8.11 16 6 C 0.02 0.29 6.71 -84.55 -0.57 -0.28 16 7 C -0.23 -2.73 10.62 29.68 0.32 -2.42 16 8 S 0.25 2.83 22.92 -107.50 -2.46 0.36 16 9 C 0.03 0.45 6.71 -13.62 -0.09 0.36 16 10 C 0.21 3.82 6.24 -5.20 -0.03 3.79 16 11 N -0.76 -16.54 5.54 -62.90 -0.35 -16.89 16 12 C 0.56 15.39 7.75 -12.98 -0.10 15.29 16 13 O -0.58 -18.11 15.02 5.20 0.08 -18.03 16 14 C -0.54 -14.97 9.54 -35.63 -0.34 -15.31 16 15 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 16 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 17 N -0.77 -22.52 11.83 55.55 0.66 -21.86 16 18 Si 0.91 19.79 29.56 -169.99 -5.02 14.76 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 22 N -0.42 -6.87 10.60 -8.53 -0.09 -6.96 16 23 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.19 1.80 8.03 -52.48 -0.42 1.37 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 31 H 0.38 7.52 8.44 -40.82 -0.34 7.18 16 32 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -34.76 310.53 -6.54 -41.30 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -3.27 Total: 3.72 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: -0.03 Total: 12.19 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.22 Total: -45.71 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.65 Total: -31.31 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.46 Total: 0.36 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.76 -6.54 -41.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358655083.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.107 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds