Wall clock time and date at job start Wed Apr 15 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34796 * 116.99752 * 179.97438 * 3 2 1 5 5 O 1.21552 * 120.00604 * 0.02562 * 4 3 2 6 6 C 1.47113 * 119.99946 * 179.97438 * 4 3 2 7 7 C 1.35287 * 123.16033 * 179.73015 * 6 4 3 8 8 S 1.70937 * 108.82310 * 179.87471 * 7 6 4 9 9 C 1.70760 * 91.13957 * 0.33169 * 8 7 6 10 10 C 1.50697 * 124.71270 * 179.83120 * 9 8 7 11 11 N 1.46500 * 109.46893 * 269.97417 * 10 9 8 12 12 C 1.34782 * 119.99975 * 179.97438 * 11 10 9 13 13 O 1.21685 * 119.99821 * 359.97438 * 12 11 10 14 14 C 1.46382 * 119.99796 * 179.97438 * 12 11 10 15 15 H 1.07998 * 120.00294 * 0.02562 * 14 12 11 16 16 C 1.40042 * 119.99552 * 179.97438 * 14 12 11 17 17 N 1.30670 * 120.00561 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99518 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47118 * 90.00357 * 18 16 14 20 20 H 1.48505 * 109.46867 * 209.99823 * 18 16 14 21 21 H 1.48498 * 109.47443 * 329.99843 * 18 16 14 22 22 N 1.28625 * 110.58148 * 359.80532 * 9 8 7 23 23 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 26 26 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 28 28 H 1.08004 * 125.58355 * 0.02562 * 7 6 4 29 29 H 1.09001 * 109.47473 * 29.97001 * 10 9 8 30 30 H 1.08994 * 109.47602 * 149.97529 * 10 9 8 31 31 H 0.97002 * 120.00229 * 0.02562 * 11 10 9 32 32 H 0.97001 * 120.00528 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3503 1.5457 0.0005 5 8 4.0908 0.5818 0.0005 6 6 3.9125 2.9051 0.0000 7 6 5.2419 3.1561 0.0058 8 16 5.4837 4.8483 -0.0006 9 6 3.7984 5.1234 -0.0008 10 6 3.1511 6.4843 -0.0019 11 7 2.9408 6.9261 1.3790 12 6 2.3720 8.1231 1.6244 13 8 2.0335 8.8370 0.6989 14 6 2.1614 8.5642 3.0041 15 1 2.4621 7.9308 3.8255 16 6 1.5708 9.8082 3.2590 17 7 1.2073 10.5749 2.2653 18 14 1.3027 10.3714 5.0198 19 1 2.4965 11.1211 5.4869 20 1 0.1093 11.2531 5.0811 21 1 1.0891 9.1880 5.8911 22 7 3.1581 4.0079 -0.0004 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 6.0224 2.4096 0.0110 29 1 3.7989 7.1944 -0.5158 30 1 2.1916 6.4298 -0.5160 31 1 3.2116 6.3574 2.1167 32 1 0.7986 11.4367 2.4418 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358655083.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:54 Heat of formation + Delta-G solvation = -108.406023 kcal Electronic energy + Delta-G solvation = -18971.709263 eV Core-core repulsion = 15637.283324 eV Total energy + Delta-G solvation = -3334.425939 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.93185 -40.55856 -39.30905 -37.79155 -35.54240 -34.48301 -32.74216 -32.02245 -29.34486 -27.77377 -26.83153 -23.99834 -22.86960 -21.79240 -21.12573 -20.25743 -19.29888 -18.04742 -17.78048 -17.56664 -17.46096 -16.65157 -16.15096 -15.77450 -15.60519 -15.14292 -14.77092 -14.53699 -14.40951 -13.85989 -13.68095 -13.32447 -13.10855 -13.03088 -13.00229 -12.70047 -12.61728 -12.56210 -12.01185 -11.95924 -11.59656 -10.97369 -10.91249 -10.86761 -10.27579 -9.82726 -9.58553 -8.28548 -6.85087 -0.76161 0.05993 0.39150 0.44688 1.43143 1.44217 1.59499 1.62220 1.88261 2.26993 2.47316 2.70953 3.19335 3.54720 3.61627 3.90843 3.96736 4.01461 4.05757 4.28209 4.34850 4.60394 4.65962 4.80363 4.87508 5.03438 5.30326 5.33734 5.84853 6.07142 6.17708 6.23802 6.61016 6.87829 7.45856 8.45931 8.66574 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.018918 B = 0.003711 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.744544 B = 7543.850877 C = 8375.558650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.351 6.351 4 C 0.551 3.449 5 O -0.519 6.519 6 C -0.012 4.012 7 C -0.211 4.211 8 S 0.348 5.652 9 C -0.010 4.010 10 C 0.213 3.787 11 N -0.749 5.749 12 C 0.543 3.457 13 O -0.626 6.626 14 C -0.570 4.570 15 H 0.087 0.913 16 C 0.031 3.969 17 N -0.819 5.819 18 Si 0.997 3.003 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.252 1.252 22 N -0.440 5.440 23 H 0.109 0.891 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.220 0.780 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.394 0.606 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.449 -17.881 -2.173 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.267 6.267 4 C 0.394 3.606 5 O -0.409 6.409 6 C -0.146 4.146 7 C -0.354 4.354 8 S 0.606 5.394 9 C -0.289 4.289 10 C 0.085 3.915 11 N -0.405 5.405 12 C 0.348 3.652 13 O -0.513 6.513 14 C -0.607 4.607 15 H 0.105 0.895 16 C -0.185 4.185 17 N -0.448 5.448 18 Si 0.817 3.183 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.175 1.175 22 N -0.157 5.157 23 H 0.127 0.873 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.237 0.763 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.227 0.773 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.573 -16.869 -2.956 18.726 hybrid contribution -0.719 -0.998 0.698 1.415 sum 6.853 -17.868 -2.258 19.270 Atomic orbital electron populations 1.21841 0.90785 1.04536 1.03374 1.23430 0.96967 0.78447 1.03244 1.86725 1.22669 1.34310 1.83028 1.19901 0.81154 0.87511 0.72017 1.90836 1.60917 1.41457 1.47688 1.19358 0.90123 0.91188 1.13939 1.27183 1.00014 1.04743 1.03472 1.82761 1.03572 0.93854 1.59232 1.26985 0.97555 0.97483 1.06848 1.19297 0.99263 0.86119 0.86788 1.45829 1.68203 1.20880 1.05622 1.18553 0.76752 0.79249 0.90667 1.90569 1.56800 1.56298 1.47589 1.21387 1.43407 1.04516 0.91381 0.89486 1.26926 0.92184 0.95653 1.03688 1.70166 1.30160 1.09313 1.35166 0.85026 0.78581 0.78869 0.75870 1.18366 1.19883 1.17540 1.66964 1.38463 0.97323 1.12902 0.87302 0.91954 0.91763 0.90321 0.90501 0.76327 0.89999 0.92263 0.77272 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 10.29 71.98 0.74 -1.58 16 2 C 0.05 1.05 6.20 71.98 0.45 1.50 16 3 O -0.35 -10.07 10.16 -57.08 -0.58 -10.65 16 4 C 0.55 16.03 7.94 70.15 0.56 16.59 16 5 O -0.52 -15.31 16.50 19.67 0.32 -14.98 16 6 C -0.01 -0.33 6.71 40.52 0.27 -0.06 16 7 C -0.21 -4.39 10.62 67.14 0.71 -3.68 16 8 S 0.35 6.94 22.92 -56.49 -1.29 5.65 16 9 C -0.01 -0.30 6.71 88.58 0.59 0.30 16 10 C 0.21 8.05 6.24 85.63 0.53 8.59 16 11 N -0.75 -33.07 5.54 -471.14 -2.61 -35.68 16 12 C 0.54 30.82 7.75 86.36 0.67 31.49 16 13 O -0.63 -40.87 15.02 -4.30 -0.06 -40.94 16 14 C -0.57 -31.75 9.54 24.83 0.24 -31.51 16 15 H 0.09 4.35 7.85 -2.91 -0.02 4.33 16 16 C 0.03 1.70 5.50 85.30 0.47 2.17 16 17 N -0.82 -49.24 11.83 21.83 0.26 -48.99 16 18 Si 1.00 40.24 29.56 68.60 2.03 42.26 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 20 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 22 N -0.44 -14.50 10.60 -180.91 -1.92 -16.41 16 23 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.22 3.22 8.03 -2.91 -0.02 3.20 16 29 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.39 15.44 8.44 -92.71 -0.78 14.65 16 32 H 0.28 14.98 8.29 -92.71 -0.77 14.22 16 Total: -1.00 -77.94 310.53 1.76 -76.18 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.39 Total: 19.76 kcal Atomic # 6 Polarization: 18.57 SS G_CDS: 5.23 Total: 23.80 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -4.27 Total: -101.08 kcal Atomic # 8 Polarization: -66.25 SS G_CDS: -0.32 Total: -66.57 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Atomic # 16 Polarization: 6.94 SS G_CDS: -1.29 Total: 5.65 kcal Total: -77.94 1.76 -76.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358655083.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.224 kcal (2) G-P(sol) polarization free energy of solvation -77.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds