Wall clock time and date at job start Wed Apr 15 2020 11:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.47194 * 2 1 4 4 C 1.34783 * 117.00344 * 179.97438 * 3 2 1 5 5 O 1.21515 * 119.99873 * 0.02562 * 4 3 2 6 6 C 1.47357 * 120.00439 * 179.97438 * 4 3 2 7 7 N 1.29944 * 125.22037 * 180.02562 * 6 4 3 8 8 C 1.31774 * 116.08823 * 179.97438 * 7 6 4 9 9 C 1.47417 * 122.56490 * 179.97438 * 8 7 6 10 10 O 1.21629 * 120.00203 * 174.55078 * 9 8 7 11 11 N 1.34774 * 119.99862 * 354.55708 * 9 8 7 12 12 C 1.46502 * 120.00128 * 353.65474 * 11 9 8 13 13 C 1.36935 * 120.00237 * 173.66617 * 11 9 8 14 14 H 1.07996 * 119.99959 * 29.20908 * 13 11 9 15 15 C 1.38994 * 119.99739 * 208.94097 * 13 11 9 16 16 N 1.31395 * 120.00697 * 17.30981 * 15 13 11 17 17 Si 1.86807 * 119.99681 * 197.30860 * 15 13 11 18 18 H 1.48506 * 109.46572 * 90.00162 * 17 15 13 19 19 H 1.48506 * 109.47102 * 209.99782 * 17 15 13 20 20 H 1.48495 * 109.47306 * 330.00521 * 17 15 13 21 21 C 1.36966 * 114.87534 * 0.27270 * 8 7 6 22 22 S 1.71036 * 108.88427 * 359.59482 * 21 8 7 23 23 H 1.08999 * 109.47315 * 300.00295 * 1 2 3 24 24 H 1.09000 * 109.47039 * 60.00309 * 1 2 3 25 25 H 1.09001 * 109.46835 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47315 * 239.99705 * 2 1 3 27 27 H 1.09000 * 109.47039 * 119.99691 * 2 1 3 28 28 H 1.09002 * 109.47548 * 208.61172 * 12 11 9 29 29 H 1.09003 * 109.47112 * 328.61645 * 12 11 9 30 30 H 1.08999 * 109.46690 * 88.61377 * 12 11 9 31 31 H 0.96996 * 120.00806 * 179.97438 * 16 15 13 32 32 H 1.07994 * 125.55667 * 179.70206 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3502 1.5456 0.0005 5 8 4.0905 0.5820 0.0005 6 6 3.9135 2.9073 0.0000 7 7 5.1809 3.1940 0.0000 8 6 5.4850 4.4762 -0.0011 9 6 6.8769 4.9616 -0.0007 10 8 7.1060 6.1518 -0.1017 11 7 7.8957 4.0864 0.1115 12 6 7.6205 2.6713 0.3722 13 6 9.1882 4.5199 -0.0181 14 1 9.4486 5.5313 0.2569 15 6 10.1659 3.6565 -0.4982 16 7 9.8196 2.5632 -1.1395 17 14 11.9724 4.0506 -0.2319 18 1 12.4256 3.4527 1.0497 19 1 12.7717 3.4888 -1.3503 20 1 12.1558 5.5234 -0.1833 21 6 4.4089 5.3235 0.0039 22 16 2.9728 4.3945 -0.0013 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 8.4575 2.2323 0.9151 29 1 6.7130 2.5817 0.9694 30 1 7.4861 2.1471 -0.5739 31 1 10.5019 1.9609 -1.4749 32 1 4.4590 6.4023 0.0085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190951496.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:57 Heat of formation + Delta-G solvation = -49.434484 kcal Electronic energy + Delta-G solvation = -19765.965950 eV Core-core repulsion = 16434.097210 eV Total energy + Delta-G solvation = -3331.868741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.57447 -39.71285 -37.56419 -36.55136 -34.70850 -32.08872 -31.67821 -30.35838 -27.01457 -26.05469 -25.13907 -23.57338 -22.47864 -20.46682 -19.31761 -18.35899 -17.23813 -16.80235 -16.75937 -16.65122 -15.47027 -14.99599 -14.76773 -14.24042 -14.09141 -13.91419 -13.26967 -13.18515 -13.05666 -12.62406 -12.16229 -11.91940 -11.88554 -11.67316 -11.37065 -11.19102 -11.02199 -10.75019 -10.74523 -10.39400 -10.35485 -9.61327 -9.34527 -8.98002 -8.71350 -8.60288 -7.60877 -6.38714 -3.93431 0.23346 1.23834 1.69699 1.96859 2.18368 2.89126 3.20062 3.24035 3.29511 4.07807 4.29319 4.37584 4.68453 4.70694 4.80571 5.01462 5.04294 5.11820 5.37603 5.49667 5.50556 5.65323 5.68663 6.13138 6.17390 6.77557 7.01551 7.41080 7.46138 7.52142 7.74189 8.12262 8.44183 9.10227 9.33736 9.92911 10.63847 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.025903 B = 0.004530 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.691020 B = 6179.461696 C = 7170.321447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.354 6.354 4 C 0.549 3.451 5 O -0.465 6.465 6 C -0.022 4.022 7 N -0.353 5.353 8 C 0.043 3.957 9 C 0.497 3.503 10 O -0.588 6.588 11 N -0.408 5.408 12 C 0.111 3.889 13 C -0.312 4.312 14 H 0.102 0.898 15 C 0.038 3.962 16 N -0.856 5.856 17 Si 0.928 3.072 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.213 4.213 22 S 0.212 5.788 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.272 0.728 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.008 -4.211 2.644 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.271 6.271 4 C 0.388 3.612 5 O -0.349 6.349 6 C -0.295 4.295 7 N -0.074 5.074 8 C -0.096 4.096 9 C 0.283 3.717 10 O -0.474 6.474 11 N -0.123 5.123 12 C -0.033 4.033 13 C -0.441 4.441 14 H 0.120 0.880 15 C -0.169 4.169 16 N -0.492 5.492 17 Si 0.754 3.246 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.356 4.356 22 S 0.466 5.534 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -18.276 -4.429 2.497 18.970 hybrid contribution 1.827 0.096 -0.041 1.830 sum -16.449 -4.333 2.456 17.187 Atomic orbital electron populations 1.21818 0.92296 1.03107 1.03702 1.23119 0.95367 0.79197 1.03199 1.86502 1.22569 1.33214 1.84805 1.19254 0.80924 0.86907 0.74123 1.90926 1.60215 1.40565 1.43241 1.25850 0.92274 0.95640 1.15697 1.67027 1.13855 1.18510 1.08021 1.21269 0.97995 0.85378 1.04953 1.16913 0.81757 0.86619 0.86422 1.90622 1.83327 1.15323 1.58100 1.43505 1.05066 1.07547 1.56148 1.21794 0.98472 0.81812 1.01214 1.19703 0.82082 1.00305 1.41976 0.88018 1.25497 1.00948 0.95964 0.94526 1.70030 1.34852 1.12616 1.31709 0.85908 0.81453 0.79236 0.78020 1.20097 1.20786 1.19075 1.27290 0.95251 1.06948 1.06120 1.83593 1.08530 0.97837 1.63476 0.91324 0.91314 0.90018 0.90729 0.90755 0.92820 0.92477 0.91858 0.91821 0.78878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.60 6.20 37.16 0.23 0.83 16 3 O -0.35 -4.33 10.08 -40.72 -0.41 -4.74 16 4 C 0.55 8.69 7.96 34.44 0.27 8.97 16 5 O -0.47 -8.67 16.85 -19.28 -0.32 -8.99 16 6 C -0.02 -0.37 7.43 -14.64 -0.11 -0.48 16 7 N -0.35 -7.31 6.76 -7.98 -0.05 -7.37 16 8 C 0.04 0.92 6.44 -84.62 -0.54 0.38 16 9 C 0.50 13.08 7.59 -12.52 -0.10 12.99 16 10 O -0.59 -16.71 16.45 5.25 0.09 -16.63 16 11 N -0.41 -11.26 2.98 -123.42 -0.37 -11.62 16 12 C 0.11 2.81 7.61 59.85 0.46 3.26 16 13 C -0.31 -8.96 9.13 -14.99 -0.14 -9.10 16 14 H 0.10 2.99 7.51 -52.49 -0.39 2.59 16 15 C 0.04 1.02 4.95 -17.46 -0.09 0.93 16 16 N -0.86 -23.80 11.41 55.50 0.63 -23.16 16 17 Si 0.93 20.81 29.59 -169.99 -5.03 15.78 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 21 C -0.21 -3.57 10.67 30.27 0.32 -3.24 16 22 S 0.21 2.75 23.02 -107.50 -2.47 0.28 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 1.37 7.42 -51.93 -0.39 0.98 16 29 H 0.06 1.34 5.57 -51.93 -0.29 1.05 16 30 H 0.06 1.70 7.62 -51.93 -0.40 1.31 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.19 2.93 8.03 -52.49 -0.42 2.51 16 LS Contribution 301.87 15.07 4.55 4.55 Total: -1.00 -33.53 301.87 -5.83 -39.36 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -3.13 Total: -1.45 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 0.69 Total: 13.99 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.21 Total: -42.15 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.65 Total: -30.36 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.47 Total: 0.28 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.53 -5.83 -39.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190951496.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.070 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds