Wall clock time and date at job start Wed Apr 15 2020 11:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.47194 * 2 1 4 4 C 1.34783 * 117.00344 * 179.97438 * 3 2 1 5 5 O 1.21515 * 119.99873 * 0.02562 * 4 3 2 6 6 C 1.47357 * 120.00439 * 179.97438 * 4 3 2 7 7 N 1.29944 * 125.22037 * 180.02562 * 6 4 3 8 8 C 1.31774 * 116.08823 * 179.97438 * 7 6 4 9 9 C 1.47417 * 122.56490 * 179.97438 * 8 7 6 10 10 O 1.21629 * 120.00203 * 174.55078 * 9 8 7 11 11 N 1.34774 * 119.99862 * 354.55708 * 9 8 7 12 12 C 1.46502 * 120.00128 * 353.65474 * 11 9 8 13 13 C 1.36935 * 120.00237 * 173.66617 * 11 9 8 14 14 H 1.07996 * 119.99959 * 29.20908 * 13 11 9 15 15 C 1.38994 * 119.99739 * 208.94097 * 13 11 9 16 16 N 1.31395 * 120.00697 * 17.30981 * 15 13 11 17 17 Si 1.86807 * 119.99681 * 197.30860 * 15 13 11 18 18 H 1.48506 * 109.46572 * 90.00162 * 17 15 13 19 19 H 1.48506 * 109.47102 * 209.99782 * 17 15 13 20 20 H 1.48495 * 109.47306 * 330.00521 * 17 15 13 21 21 C 1.36966 * 114.87534 * 0.27270 * 8 7 6 22 22 S 1.71036 * 108.88427 * 359.59482 * 21 8 7 23 23 H 1.08999 * 109.47315 * 300.00295 * 1 2 3 24 24 H 1.09000 * 109.47039 * 60.00309 * 1 2 3 25 25 H 1.09001 * 109.46835 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47315 * 239.99705 * 2 1 3 27 27 H 1.09000 * 109.47039 * 119.99691 * 2 1 3 28 28 H 1.09002 * 109.47548 * 208.61172 * 12 11 9 29 29 H 1.09003 * 109.47112 * 328.61645 * 12 11 9 30 30 H 1.08999 * 109.46690 * 88.61377 * 12 11 9 31 31 H 0.96996 * 120.00806 * 179.97438 * 16 15 13 32 32 H 1.07994 * 125.55667 * 179.70206 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3502 1.5456 0.0005 5 8 4.0905 0.5820 0.0005 6 6 3.9135 2.9073 0.0000 7 7 5.1809 3.1940 0.0000 8 6 5.4850 4.4762 -0.0011 9 6 6.8769 4.9616 -0.0007 10 8 7.1060 6.1518 -0.1017 11 7 7.8957 4.0864 0.1115 12 6 7.6205 2.6713 0.3722 13 6 9.1882 4.5199 -0.0181 14 1 9.4486 5.5313 0.2569 15 6 10.1659 3.6565 -0.4982 16 7 9.8196 2.5632 -1.1395 17 14 11.9724 4.0506 -0.2319 18 1 12.4256 3.4527 1.0497 19 1 12.7717 3.4888 -1.3503 20 1 12.1558 5.5234 -0.1833 21 6 4.4089 5.3235 0.0039 22 16 2.9728 4.3945 -0.0013 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 8.4575 2.2323 0.9151 29 1 6.7130 2.5817 0.9694 30 1 7.4861 2.1471 -0.5739 31 1 10.5019 1.9609 -1.4749 32 1 4.4590 6.4023 0.0085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190951496.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:57 Heat of formation + Delta-G solvation = -72.507417 kcal Electronic energy + Delta-G solvation = -19766.966468 eV Core-core repulsion = 16434.097210 eV Total energy + Delta-G solvation = -3332.869258 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.87322 -41.18617 -39.37577 -37.72115 -36.77935 -33.75927 -32.84879 -31.71346 -28.73889 -27.68959 -27.01200 -24.97244 -23.54312 -21.86274 -20.69425 -19.99315 -18.93094 -18.45883 -17.93651 -17.83918 -17.19016 -16.78958 -16.39309 -15.95647 -15.41370 -15.29988 -14.71244 -14.55871 -14.41581 -13.81668 -13.59503 -13.46420 -13.27019 -12.97793 -12.92295 -12.74465 -12.53854 -12.49376 -12.12781 -12.07635 -11.57458 -11.14512 -10.91442 -10.82542 -10.55211 -10.06452 -9.69991 -8.42591 -6.10768 -1.06562 -0.01477 0.34811 0.47762 1.08454 1.37171 1.39746 1.53732 1.57196 2.23344 2.39927 2.92330 3.04124 3.29459 3.60283 4.04218 4.04498 4.08161 4.09354 4.38112 4.51967 4.76396 4.77865 4.98483 5.00392 5.07198 5.32859 5.35869 5.39261 6.00263 6.13275 6.38962 6.52869 7.02441 7.30059 7.87832 8.60799 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.025903 B = 0.004530 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.691020 B = 6179.461696 C = 7170.321447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.342 6.342 4 C 0.556 3.444 5 O -0.503 6.503 6 C -0.055 4.055 7 N -0.396 5.396 8 C 0.003 3.997 9 C 0.494 3.506 10 O -0.620 6.620 11 N -0.432 5.432 12 C 0.137 3.863 13 C -0.356 4.356 14 H 0.082 0.918 15 C 0.000 4.000 16 N -0.887 5.887 17 Si 0.999 3.001 18 H -0.263 1.263 19 H -0.272 1.272 20 H -0.267 1.267 21 C -0.207 4.207 22 S 0.382 5.618 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.277 0.723 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.913 -4.038 2.909 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.258 6.258 4 C 0.395 3.605 5 O -0.390 6.390 6 C -0.327 4.327 7 N -0.117 5.117 8 C -0.137 4.137 9 C 0.282 3.718 10 O -0.508 6.508 11 N -0.148 5.148 12 C -0.006 4.006 13 C -0.484 4.484 14 H 0.100 0.900 15 C -0.203 4.203 16 N -0.523 5.523 17 Si 0.821 3.179 18 H -0.188 1.188 19 H -0.197 1.197 20 H -0.191 1.191 21 C -0.351 4.351 22 S 0.637 5.363 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.122 0.878 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -21.246 -4.277 2.765 21.848 hybrid contribution 2.306 0.104 -0.136 2.312 sum -18.941 -4.172 2.629 19.572 Atomic orbital electron populations 1.21855 0.89353 1.04739 1.04200 1.23536 0.97492 0.77608 1.03328 1.86498 1.20123 1.35267 1.83937 1.19241 0.81807 0.86174 0.73237 1.90907 1.61343 1.41677 1.45057 1.26053 0.92503 0.98209 1.15886 1.66797 1.16603 1.18540 1.09736 1.20536 0.96349 0.86858 1.09925 1.17606 0.83779 0.86125 0.84287 1.90560 1.84778 1.16572 1.58890 1.43686 1.05288 1.08233 1.57553 1.21517 0.98471 0.80798 0.99854 1.19737 0.83697 1.00291 1.44699 0.90015 1.26392 1.05162 0.95460 0.93331 1.70117 1.36420 1.13514 1.32287 0.84867 0.75581 0.78893 0.78556 1.18754 1.19663 1.19134 1.27740 0.96733 1.08203 1.02398 1.83039 1.02935 0.92121 1.58162 0.90713 0.90857 0.87831 0.90859 0.90627 0.94231 0.90796 0.94248 0.91331 0.77238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 10.29 71.98 0.74 -0.52 16 2 C 0.05 0.86 6.20 71.98 0.45 1.31 16 3 O -0.34 -7.47 10.08 -56.94 -0.57 -8.04 16 4 C 0.56 16.88 7.96 70.22 0.56 17.44 16 5 O -0.50 -18.86 16.85 19.79 0.33 -18.52 16 6 C -0.05 -1.77 7.43 87.37 0.65 -1.12 16 7 N -0.40 -16.45 6.76 -179.16 -1.21 -17.66 16 8 C 0.00 0.11 6.44 41.27 0.27 0.38 16 9 C 0.49 27.05 7.59 86.66 0.66 27.70 16 10 O -0.62 -36.54 16.45 -4.12 -0.07 -36.61 16 11 N -0.43 -25.10 2.98 -662.65 -1.98 -27.07 16 12 C 0.14 7.33 7.61 127.77 0.97 8.30 16 13 C -0.36 -21.55 9.13 84.08 0.77 -20.78 16 14 H 0.08 5.11 7.51 -2.91 -0.02 5.08 16 15 C 0.00 0.02 4.95 84.94 0.42 0.44 16 16 N -0.89 -51.15 11.41 21.67 0.25 -50.90 16 17 Si 1.00 43.79 29.59 68.60 2.03 45.82 16 18 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 C -0.21 -6.43 10.67 67.52 0.72 -5.71 16 22 S 0.38 8.23 23.02 -56.49 -1.30 6.93 16 23 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.04 2.13 7.42 -2.39 -0.02 2.11 16 29 H 0.07 3.65 5.57 -2.39 -0.01 3.63 16 30 H 0.04 2.24 7.62 -2.39 -0.02 2.23 16 31 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 32 H 0.21 5.75 8.03 -2.91 -0.02 5.72 16 Total: -1.00 -78.35 301.87 4.84 -73.51 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 1.16 Total: 5.10 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 6.20 Total: 27.45 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -2.94 Total: -95.63 kcal Atomic # 8 Polarization: -62.87 SS G_CDS: -0.31 Total: -63.17 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 8.23 SS G_CDS: -1.30 Total: 6.93 kcal Total: -78.35 4.84 -73.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190951496.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.998 kcal (2) G-P(sol) polarization free energy of solvation -78.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds