Wall clock time and date at job start Wed Apr 15 2020 11:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 119.99648 * 2 1 4 4 O 1.21546 * 119.99848 * 0.02562 * 3 2 1 5 5 C 1.47866 * 119.99656 * 179.97438 * 3 2 1 6 6 C 1.39615 * 120.11185 * 359.97438 * 5 3 2 7 7 C 1.37980 * 120.00312 * 180.02562 * 6 5 3 8 8 C 1.38244 * 120.23053 * 0.03655 * 7 6 5 9 9 C 1.38981 * 120.22209 * 359.96323 * 8 7 6 10 10 N 1.39703 * 120.00769 * 180.02562 * 9 8 7 11 11 S 1.65603 * 119.99905 * 75.19887 * 10 9 8 12 12 O 1.42096 * 106.40133 * 177.80009 * 11 10 9 13 13 O 1.42104 * 106.40242 * 310.72099 * 11 10 9 14 14 C 1.76199 * 107.21738 * 64.26088 * 11 10 9 15 15 H 1.08004 * 120.00047 * 5.17375 * 14 11 10 16 16 C 1.37878 * 120.00060 * 185.17468 * 14 11 10 17 17 N 1.31515 * 120.00357 * 179.97438 * 16 14 11 18 18 Si 1.86797 * 119.99920 * 359.97438 * 16 14 11 19 19 H 1.48505 * 109.46930 * 89.99839 * 18 16 14 20 20 H 1.48495 * 109.47534 * 209.99852 * 18 16 14 21 21 H 1.48504 * 109.47227 * 330.00291 * 18 16 14 22 22 C 1.38681 * 119.98707 * 0.02562 * 9 8 7 23 23 H 1.08997 * 109.47369 * 60.00211 * 1 2 3 24 24 H 1.09007 * 109.46725 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47403 * 299.99459 * 1 2 3 26 26 H 0.97005 * 120.00654 * 179.97438 * 2 1 3 27 27 H 1.07994 * 119.99568 * 0.03797 * 6 5 3 28 28 H 1.08002 * 119.88556 * 180.02562 * 7 6 5 29 29 H 1.08003 * 119.89011 * 179.97438 * 8 7 6 30 30 H 0.97001 * 120.00275 * 255.19916 * 10 9 8 31 31 H 0.96997 * 120.00154 * 179.97438 * 17 16 14 32 32 H 1.08002 * 120.11309 * 179.72406 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5310 2.2199 0.0005 5 6 3.6175 1.1673 0.0006 6 6 4.3179 -0.0404 0.0017 7 6 5.6977 -0.0378 0.0027 8 6 6.3915 1.1579 0.0035 9 6 5.7038 2.3657 0.0024 10 7 6.4094 3.5715 0.0027 11 16 7.1451 4.1005 -1.3834 12 8 7.7247 5.3605 -1.0742 13 8 7.8947 3.0021 -1.8843 14 6 5.8733 4.4137 -2.5620 15 1 4.8362 4.3291 -2.2728 16 6 6.2021 4.7669 -3.8536 17 7 5.2529 5.0002 -4.7335 18 14 7.9959 4.9141 -4.3538 19 1 8.4796 3.6020 -4.8536 20 1 8.1288 5.9320 -5.4267 21 1 8.8054 5.3250 -3.1785 22 6 4.3170 2.3737 0.0011 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.9501 -0.8400 0.0004 27 1 3.7797 -0.9767 0.0015 28 1 6.2376 -0.9732 0.0031 29 1 7.4715 1.1536 0.0047 30 1 6.4684 4.0988 0.8147 31 1 5.4843 5.2490 -5.6420 32 1 3.7806 3.3111 0.0048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192978757.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:04 Heat of formation + Delta-G solvation = -84.805010 kcal Electronic energy + Delta-G solvation = -20091.460455 eV Core-core repulsion = 16758.057933 eV Total energy + Delta-G solvation = -3333.402522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.09659 -38.43468 -35.70431 -34.82284 -34.53348 -34.34469 -33.02884 -31.08388 -28.99749 -26.86486 -26.41338 -23.33138 -22.16404 -20.50560 -19.27250 -18.46147 -17.45289 -16.78892 -16.24767 -16.06039 -15.85064 -15.20290 -15.09636 -14.64480 -14.10103 -13.66903 -13.55507 -13.39483 -13.13456 -12.85901 -12.47851 -12.33935 -11.93061 -11.55392 -11.41016 -11.30677 -10.88847 -10.70649 -10.55871 -10.05151 -9.98392 -9.58403 -9.24504 -9.22776 -8.98645 -8.78013 -8.43763 -6.79329 -5.34501 0.97457 1.39748 2.00144 2.97043 3.07107 3.15042 3.16560 3.23710 3.93616 3.97411 4.16684 4.59151 4.70736 4.90664 5.07109 5.09731 5.24017 5.38651 5.43658 5.55134 5.61567 5.68387 6.02195 6.12429 6.25845 6.29322 6.42427 6.50730 6.66746 7.00207 7.41184 7.48326 7.63862 8.22017 8.23539 8.70230 10.32978 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.021757 B = 0.005671 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.611383 B = 4935.809706 C = 5535.984122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.736 5.736 3 C 0.561 3.439 4 O -0.531 6.531 5 C -0.136 4.136 6 C -0.091 4.091 7 C -0.121 4.121 8 C -0.081 4.081 9 C 0.151 3.849 10 N -1.074 6.074 11 S 2.668 3.332 12 O -1.001 7.001 13 O -1.003 7.003 14 C -1.012 5.012 15 H 0.124 0.876 16 C 0.153 3.847 17 N -0.819 5.819 18 Si 0.816 3.184 19 H -0.245 1.245 20 H -0.257 1.257 21 H -0.233 1.233 22 C -0.050 4.050 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.401 0.599 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.415 0.585 31 H 0.281 0.719 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.298 -13.070 9.917 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.389 5.389 3 C 0.349 3.651 4 O -0.408 6.408 5 C -0.140 4.140 6 C -0.110 4.110 7 C -0.140 4.140 8 C -0.102 4.102 9 C 0.056 3.944 10 N -0.825 5.825 11 S 2.772 3.228 12 O -0.991 6.991 13 O -0.993 6.993 14 C -1.147 5.147 15 H 0.142 0.858 16 C -0.067 4.067 17 N -0.447 5.447 18 Si 0.636 3.364 19 H -0.169 1.169 20 H -0.181 1.181 21 H -0.155 1.155 22 C -0.072 4.072 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.236 0.764 27 H 0.142 0.858 28 H 0.150 0.850 29 H 0.156 0.844 30 H 0.251 0.749 31 H 0.091 0.909 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.886 -12.213 9.494 15.950 hybrid contribution 0.168 -0.042 -0.386 0.423 sum -3.718 -12.254 9.109 15.715 Atomic orbital electron populations 1.21529 0.79428 1.02046 1.02523 1.45681 1.07726 1.08636 1.76808 1.18337 0.87351 0.83628 0.75807 1.90791 1.69915 1.31138 1.48912 1.19661 0.92294 0.94223 1.07853 1.21197 0.94647 0.96427 0.98738 1.20929 0.93675 0.97990 1.01421 1.21797 1.01314 0.91542 0.95502 1.17116 0.89908 0.85760 1.01656 1.53351 1.70476 1.29414 1.29212 1.01714 0.75050 0.73089 0.72971 1.93483 1.78291 1.42847 1.84501 1.93395 1.71932 1.55379 1.78582 1.30338 1.12033 1.62469 1.09833 0.85793 1.24431 0.98200 0.89206 0.94876 1.69997 1.33486 1.36697 1.04562 0.87658 0.84238 0.81068 0.83400 1.16854 1.18147 1.15538 1.21628 0.93274 0.98407 0.93882 0.92040 0.90733 0.92216 0.76442 0.85811 0.85011 0.84430 0.74937 0.90855 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 10.70 59.85 0.64 1.43 16 2 N -0.74 -7.82 5.66 -68.04 -0.39 -8.21 16 3 C 0.56 8.61 7.77 -12.32 -0.10 8.52 16 4 O -0.53 -10.29 16.34 5.32 0.09 -10.20 16 5 C -0.14 -2.08 5.87 -104.99 -0.62 -2.70 16 6 C -0.09 -1.08 9.54 -39.16 -0.37 -1.46 16 7 C -0.12 -1.52 10.02 -39.67 -0.40 -1.92 16 8 C -0.08 -1.28 9.28 -39.30 -0.36 -1.64 16 9 C 0.15 2.73 5.79 -83.83 -0.49 2.24 16 10 N -1.07 -20.70 5.69 32.39 0.18 -20.51 16 11 S 2.67 66.42 4.18 -107.50 -0.45 65.97 16 12 O -1.00 -26.74 16.58 -57.17 -0.95 -27.69 16 13 O -1.00 -25.99 15.41 -57.17 -0.88 -26.87 16 14 C -1.01 -28.67 10.21 30.60 0.31 -28.35 16 15 H 0.12 3.61 8.06 -52.48 -0.42 3.18 16 16 C 0.15 4.44 5.47 -17.82 -0.10 4.34 16 17 N -0.82 -23.99 13.96 55.43 0.77 -23.22 16 18 Si 0.82 21.00 26.32 -169.99 -4.47 16.53 16 19 H -0.24 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.23 -6.07 5.89 56.52 0.33 -5.73 16 22 C -0.05 -0.89 9.52 -38.96 -0.37 -1.26 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.40 2.92 6.86 -40.82 -0.28 2.64 16 27 H 0.12 0.95 6.40 -52.49 -0.34 0.61 16 28 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.14 2.11 7.94 -52.48 -0.42 1.70 16 30 H 0.41 6.60 8.95 -34.47 -0.31 6.29 16 31 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.14 2.68 7.65 -52.49 -0.40 2.28 16 LS Contribution 295.08 15.07 4.45 4.45 Total: -1.00 -36.25 295.08 -6.56 -42.81 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -3.06 Total: 7.76 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -1.85 Total: -20.81 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.57 Total: -51.94 kcal Atomic # 8 Polarization: -63.01 SS G_CDS: -1.74 Total: -64.75 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.47 Total: 16.53 kcal Atomic # 16 Polarization: 66.42 SS G_CDS: -0.45 Total: 65.97 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -36.25 -6.56 -42.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978757.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.000 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds