Wall clock time and date at job start Wed Apr 15 2020 11:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 119.99648 * 2 1 4 4 O 1.21546 * 119.99848 * 0.02562 * 3 2 1 5 5 C 1.47866 * 119.99656 * 179.97438 * 3 2 1 6 6 C 1.39615 * 120.11185 * 359.97438 * 5 3 2 7 7 C 1.37980 * 120.00312 * 180.02562 * 6 5 3 8 8 C 1.38244 * 120.23053 * 0.03655 * 7 6 5 9 9 C 1.38981 * 120.22209 * 359.96323 * 8 7 6 10 10 N 1.39703 * 120.00769 * 180.02562 * 9 8 7 11 11 S 1.65603 * 119.99905 * 75.19887 * 10 9 8 12 12 O 1.42096 * 106.40133 * 177.80009 * 11 10 9 13 13 O 1.42104 * 106.40242 * 310.72099 * 11 10 9 14 14 C 1.76199 * 107.21738 * 64.26088 * 11 10 9 15 15 H 1.08004 * 120.00047 * 5.17375 * 14 11 10 16 16 C 1.37878 * 120.00060 * 185.17468 * 14 11 10 17 17 N 1.31515 * 120.00357 * 179.97438 * 16 14 11 18 18 Si 1.86797 * 119.99920 * 359.97438 * 16 14 11 19 19 H 1.48505 * 109.46930 * 89.99839 * 18 16 14 20 20 H 1.48495 * 109.47534 * 209.99852 * 18 16 14 21 21 H 1.48504 * 109.47227 * 330.00291 * 18 16 14 22 22 C 1.38681 * 119.98707 * 0.02562 * 9 8 7 23 23 H 1.08997 * 109.47369 * 60.00211 * 1 2 3 24 24 H 1.09007 * 109.46725 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47403 * 299.99459 * 1 2 3 26 26 H 0.97005 * 120.00654 * 179.97438 * 2 1 3 27 27 H 1.07994 * 119.99568 * 0.03797 * 6 5 3 28 28 H 1.08002 * 119.88556 * 180.02562 * 7 6 5 29 29 H 1.08003 * 119.89011 * 179.97438 * 8 7 6 30 30 H 0.97001 * 120.00275 * 255.19916 * 10 9 8 31 31 H 0.96997 * 120.00154 * 179.97438 * 17 16 14 32 32 H 1.08002 * 120.11309 * 179.72406 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5310 2.2199 0.0005 5 6 3.6175 1.1673 0.0006 6 6 4.3179 -0.0404 0.0017 7 6 5.6977 -0.0378 0.0027 8 6 6.3915 1.1579 0.0035 9 6 5.7038 2.3657 0.0024 10 7 6.4094 3.5715 0.0027 11 16 7.1451 4.1005 -1.3834 12 8 7.7247 5.3605 -1.0742 13 8 7.8947 3.0021 -1.8843 14 6 5.8733 4.4137 -2.5620 15 1 4.8362 4.3291 -2.2728 16 6 6.2021 4.7669 -3.8536 17 7 5.2529 5.0002 -4.7335 18 14 7.9959 4.9141 -4.3538 19 1 8.4796 3.6020 -4.8536 20 1 8.1288 5.9320 -5.4267 21 1 8.8054 5.3250 -3.1785 22 6 4.3170 2.3737 0.0011 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.9501 -0.8400 0.0004 27 1 3.7797 -0.9767 0.0015 28 1 6.2376 -0.9732 0.0031 29 1 7.4715 1.1536 0.0047 30 1 6.4684 4.0988 0.8147 31 1 5.4843 5.2490 -5.6420 32 1 3.7806 3.3111 0.0048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192978757.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:03 Heat of formation + Delta-G solvation = -115.941286 kcal Electronic energy + Delta-G solvation = -20092.810625 eV Core-core repulsion = 16758.057933 eV Total energy + Delta-G solvation = -3334.752692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27210 -39.66426 -37.74851 -36.59592 -36.08366 -35.56143 -35.20655 -32.24355 -30.28179 -28.60197 -27.79635 -24.46069 -23.37776 -21.71947 -21.16238 -19.86627 -19.26214 -18.76078 -17.59746 -17.32740 -17.04588 -16.94171 -16.27742 -16.06286 -15.79702 -15.43314 -14.99225 -14.86582 -14.67078 -14.17437 -13.87066 -13.46802 -13.29669 -13.15392 -13.01885 -12.86647 -12.75137 -12.63466 -12.49882 -11.93986 -11.49819 -11.36765 -11.17052 -10.81150 -10.29103 -9.91598 -9.72925 -8.98134 -7.56826 -0.26643 -0.06323 0.41106 1.03857 1.13515 1.18044 1.78804 1.86321 2.15619 2.39601 2.41805 2.80796 3.19096 3.69930 3.93260 3.95256 4.11133 4.21494 4.35394 4.46065 4.51381 4.63620 4.85438 4.97196 5.04047 5.23283 5.32871 5.36788 5.38133 5.43856 5.81551 5.98745 6.20519 6.49788 6.50083 7.17336 8.20324 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.021757 B = 0.005671 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.611383 B = 4935.809706 C = 5535.984122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.712 5.712 3 C 0.553 3.447 4 O -0.586 6.586 5 C -0.148 4.148 6 C -0.066 4.066 7 C -0.108 4.108 8 C -0.093 4.093 9 C 0.116 3.884 10 N -1.060 6.060 11 S 2.697 3.303 12 O -1.023 7.023 13 O -1.010 7.010 14 C -1.039 5.039 15 H 0.097 0.903 16 C 0.105 3.895 17 N -0.854 5.854 18 Si 0.844 3.156 19 H -0.232 1.232 20 H -0.222 1.222 21 H -0.240 1.240 22 C -0.077 4.077 23 H 0.044 0.956 24 H 0.122 0.878 25 H 0.053 0.947 26 H 0.421 0.579 27 H 0.179 0.821 28 H 0.180 0.820 29 H 0.142 0.858 30 H 0.428 0.572 31 H 0.292 0.708 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 -16.530 10.293 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.365 5.365 3 C 0.341 3.659 4 O -0.467 6.467 5 C -0.152 4.152 6 C -0.085 4.085 7 C -0.126 4.126 8 C -0.114 4.114 9 C 0.022 3.978 10 N -0.815 5.815 11 S 2.798 3.202 12 O -1.013 7.013 13 O -1.000 7.000 14 C -1.172 5.172 15 H 0.115 0.885 16 C -0.111 4.111 17 N -0.484 5.484 18 Si 0.661 3.339 19 H -0.155 1.155 20 H -0.144 1.144 21 H -0.163 1.163 22 C -0.100 4.100 23 H 0.063 0.937 24 H 0.140 0.860 25 H 0.071 0.929 26 H 0.259 0.741 27 H 0.196 0.804 28 H 0.198 0.802 29 H 0.160 0.840 30 H 0.266 0.734 31 H 0.103 0.897 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.209 -15.710 9.848 18.817 hybrid contribution -0.198 0.887 -0.396 0.991 sum -3.407 -14.823 9.452 17.907 Atomic orbital electron populations 1.21748 0.78076 1.04778 1.01458 1.45554 1.08611 1.07957 1.74359 1.18523 0.87556 0.84203 0.75569 1.90765 1.70816 1.33352 1.51783 1.19842 0.92546 0.94686 1.08138 1.21758 0.94737 0.96939 0.95061 1.21480 0.93985 0.98417 0.98704 1.22042 1.01818 0.91847 0.95691 1.17360 0.89988 0.85843 1.04636 1.52745 1.70353 1.30438 1.28009 1.00730 0.74001 0.72429 0.73004 1.93442 1.78622 1.44248 1.84988 1.93368 1.71757 1.55288 1.79587 1.30906 1.12332 1.62516 1.11396 0.88458 1.25262 1.01787 0.88980 0.95095 1.70037 1.35301 1.37606 1.05462 0.87219 0.79889 0.82773 0.84023 1.15473 1.14428 1.16263 1.21538 0.93504 0.98772 0.96151 0.93678 0.86005 0.92856 0.74054 0.80373 0.80235 0.84041 0.73361 0.89743 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.70 127.77 1.37 2.65 16 2 N -0.71 -13.24 5.66 -487.45 -2.76 -16.00 16 3 C 0.55 16.80 7.77 86.79 0.67 17.47 16 4 O -0.59 -23.83 16.34 -3.86 -0.06 -23.89 16 5 C -0.15 -4.40 5.87 -20.10 -0.12 -4.52 16 6 C -0.07 -1.30 9.54 22.54 0.21 -1.09 16 7 C -0.11 -2.23 10.02 22.21 0.22 -2.01 16 8 C -0.09 -2.78 9.28 22.45 0.21 -2.57 16 9 C 0.12 4.26 5.79 38.17 0.22 4.48 16 10 N -1.06 -41.97 5.69 -51.45 -0.29 -42.26 16 11 S 2.70 136.13 4.18 -56.49 -0.24 135.89 16 12 O -1.02 -55.23 16.58 -128.00 -2.12 -57.35 16 13 O -1.01 -51.87 15.41 -128.00 -1.97 -53.84 16 14 C -1.04 -61.08 10.21 67.73 0.69 -60.39 16 15 H 0.10 6.06 8.06 -2.91 -0.02 6.04 16 16 C 0.11 6.24 5.47 84.65 0.46 6.70 16 17 N -0.85 -51.19 13.96 21.45 0.30 -50.89 16 18 Si 0.84 42.25 26.32 68.60 1.81 44.05 16 19 H -0.23 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.22 -9.79 7.11 99.48 0.71 -9.08 16 21 H -0.24 -12.23 5.89 99.48 0.59 -11.65 16 22 C -0.08 -2.88 9.52 22.67 0.22 -2.67 16 23 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.42 4.12 6.86 -92.70 -0.64 3.48 16 27 H 0.18 1.51 6.40 -2.91 -0.02 1.49 16 28 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.14 4.07 7.94 -2.91 -0.02 4.04 16 30 H 0.43 14.12 8.95 -96.74 -0.87 13.25 16 31 H 0.29 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.11 4.75 7.65 -2.91 -0.02 4.72 16 Total: -1.00 -83.24 295.08 -1.62 -84.87 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -0.44 Total: 21.37 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 4.16 Total: -41.94 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -2.75 Total: -109.15 kcal Atomic # 8 Polarization: -130.93 SS G_CDS: -4.16 Total: -135.09 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.81 Total: 44.05 kcal Atomic # 16 Polarization: 136.13 SS G_CDS: -0.24 Total: 135.89 kcal Total: -83.24 -1.62 -84.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978757.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.073 kcal (2) G-P(sol) polarization free energy of solvation -83.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds