Wall clock time and date at job start Wed Apr 15 2020 11:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35999 * 117.00309 * 2 1 4 4 C 1.38660 * 119.98744 * 359.72642 * 3 2 1 5 5 C 1.38476 * 120.30171 * 179.76146 * 4 3 2 6 6 Cl 1.73612 * 119.85814 * 180.25789 * 5 4 3 7 7 C 1.38036 * 120.28406 * 0.51187 * 5 4 3 8 8 C 1.39705 * 119.97378 * 359.74398 * 7 5 4 9 9 C 1.47450 * 120.15095 * 180.02562 * 8 7 5 10 10 N 1.29749 * 120.00159 * 179.97438 * 9 8 7 11 11 N 1.40101 * 120.00333 * 180.02562 * 10 9 8 12 12 C 1.46499 * 120.00098 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47133 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00054 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00096 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99873 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99841 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47537 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47117 * 120.00073 * 17 15 13 20 20 H 1.48500 * 109.46960 * 239.99741 * 17 15 13 21 21 C 1.38897 * 119.99220 * 179.97438 * 3 2 1 22 22 O 1.35965 * 120.14107 * 359.96512 * 21 3 2 23 23 H 1.09001 * 109.47103 * 300.00173 * 1 2 3 24 24 H 1.09004 * 109.47054 * 59.99677 * 1 2 3 25 25 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.84977 * 359.97438 * 4 3 2 27 27 H 1.07998 * 120.01844 * 179.76269 * 7 5 4 28 28 H 1.07997 * 120.00042 * 359.97438 * 9 8 7 29 29 H 0.97000 * 119.99686 * 359.97438 * 11 10 9 30 30 H 1.09004 * 109.46932 * 299.99939 * 12 11 10 31 31 H 1.09004 * 109.47063 * 59.99731 * 12 11 10 32 32 H 0.97001 * 120.00206 * 179.97438 * 16 15 13 33 33 H 0.96701 * 114.00317 * 89.99422 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2912 2.3745 -0.0057 5 6 1.9131 3.6117 -0.0008 6 17 0.9560 5.0602 -0.0013 7 6 3.2907 3.6983 -0.0008 8 6 4.0632 2.5343 -0.0003 9 6 5.5351 2.6222 0.0003 10 7 6.2498 1.5393 0.0012 11 7 7.6483 1.6228 0.0023 12 6 8.4551 0.4000 0.0039 13 6 9.9177 0.7633 0.0042 14 1 10.2163 1.8011 0.0029 15 6 10.8746 -0.2294 0.0062 16 7 10.5109 -1.4932 0.0073 17 14 12.6874 0.2209 0.0073 18 1 12.8304 1.6990 0.0052 19 1 13.3355 -0.3378 1.2210 20 1 13.3377 -0.3406 -1.2039 21 6 3.4336 1.2842 0.0005 22 8 4.1767 0.1455 0.0018 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2128 2.3150 -0.0106 27 1 3.7713 4.6655 -0.0008 28 1 6.0184 3.5881 0.0000 29 1 8.0823 2.4903 0.0020 30 1 8.2256 -0.1856 0.8942 31 1 8.2271 -0.1869 -0.8859 32 1 11.1841 -2.1917 0.0083 33 1 4.3920 -0.1846 -0.8812 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002760917.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:04 Heat of formation + Delta-G solvation = -37.084424 kcal Electronic energy + Delta-G solvation = -19010.138367 eV Core-core repulsion = 15676.761458 eV Total energy + Delta-G solvation = -3333.376908 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.44659 -39.11885 -38.10236 -37.61248 -36.79288 -35.32961 -33.30113 -31.16315 -30.55476 -28.40209 -27.75489 -24.94121 -23.82558 -23.25604 -21.63888 -19.52308 -18.90049 -18.62887 -17.96043 -16.99687 -16.90744 -16.77259 -16.34174 -15.84795 -15.55764 -15.03581 -14.92132 -14.63094 -14.20517 -14.10117 -13.57178 -13.45118 -13.16820 -12.81285 -12.72727 -12.58790 -12.38648 -12.19858 -11.98064 -11.73790 -11.61739 -11.47097 -10.78431 -10.75503 -10.02950 -9.16988 -8.50741 -8.30124 -6.45001 -0.26883 0.13742 1.02194 1.42037 1.43024 1.56191 1.57371 2.11179 2.24541 2.43450 2.59039 3.04974 3.27338 3.68732 3.99205 4.05053 4.12075 4.29978 4.41030 4.47349 4.67273 4.75013 4.81125 4.94330 5.10316 5.17029 5.34383 5.38904 5.46833 5.68380 6.00777 6.23614 6.26815 6.75860 6.88839 7.26786 7.70359 8.82185 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.003172 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.077194 B = 8824.926781 C = 9850.972739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.325 6.325 3 C 0.108 3.892 4 C -0.182 4.182 5 C -0.006 4.006 6 Cl -0.051 7.051 7 C -0.112 4.112 8 C -0.009 4.009 9 C 0.014 3.986 10 N -0.210 5.210 11 N -0.641 5.641 12 C 0.304 3.696 13 C -0.556 4.556 14 H 0.073 0.927 15 C 0.009 3.991 16 N -0.926 5.926 17 Si 0.983 3.017 18 H -0.259 1.259 19 H -0.277 1.277 20 H -0.276 1.276 21 C 0.077 3.923 22 O -0.481 6.481 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.117 0.883 26 H 0.166 0.834 27 H 0.162 0.838 28 H 0.134 0.866 29 H 0.377 0.623 30 H -0.017 1.017 31 H -0.010 1.010 32 H 0.270 0.730 33 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.066 10.877 -1.754 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.061 3.939 4 C -0.202 4.202 5 C -0.033 4.033 6 Cl -0.022 7.022 7 C -0.134 4.134 8 C -0.012 4.012 9 C -0.195 4.195 10 N -0.021 5.021 11 N -0.379 5.379 12 C 0.181 3.819 13 C -0.595 4.595 14 H 0.091 0.909 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.806 3.194 18 H -0.183 1.183 19 H -0.203 1.203 20 H -0.201 1.201 21 C 0.028 3.972 22 O -0.292 6.292 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.136 0.864 26 H 0.184 0.816 27 H 0.180 0.820 28 H 0.151 0.849 29 H 0.215 0.785 30 H 0.001 0.999 31 H 0.007 0.993 32 H 0.079 0.921 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -21.917 9.483 -1.148 23.908 hybrid contribution 1.056 0.968 -0.438 1.498 sum -20.861 10.451 -1.586 23.386 Atomic orbital electron populations 1.23454 0.76102 1.05835 1.02686 1.86193 1.23707 1.25561 1.88414 1.19186 0.90935 0.85525 0.98230 1.21179 1.01673 0.89307 1.08077 1.20403 0.91382 0.87846 1.03621 1.98377 1.71300 1.35726 1.96821 1.20992 0.91256 0.98474 1.02638 1.18497 0.90611 0.91876 1.00255 1.23838 0.92085 0.95220 1.08327 1.74231 0.93192 1.29203 1.05502 1.48574 0.98026 1.08640 1.82688 1.18329 0.88157 0.81755 0.93672 1.21562 0.90782 0.94132 1.53017 0.90903 1.25955 1.04847 0.94436 0.93864 1.70109 1.36039 1.00453 1.49888 0.85140 0.77433 0.78915 0.77892 1.18320 1.20258 1.20098 1.18250 0.86919 0.86822 1.05173 1.84897 1.71792 1.38824 1.33642 0.91335 0.90929 0.86431 0.81625 0.81995 0.84899 0.78493 0.99909 0.99258 0.92121 0.75064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.29 16 2 O -0.33 -7.87 10.28 -79.52 -0.82 -8.69 16 3 C 0.11 2.72 6.69 22.53 0.15 2.87 16 4 C -0.18 -3.55 8.81 22.43 0.20 -3.35 16 5 C -0.01 -0.11 6.31 22.28 0.14 0.03 16 6 Cl -0.05 -0.83 28.94 -2.72 -0.08 -0.91 16 7 C -0.11 -2.42 9.56 22.58 0.22 -2.21 16 8 C -0.01 -0.26 5.88 -20.08 -0.12 -0.38 16 9 C 0.01 0.46 10.75 87.43 0.94 1.40 16 10 N -0.21 -8.71 9.34 -52.20 -0.49 -9.20 16 11 N -0.64 -29.45 6.63 -190.79 -1.26 -30.71 16 12 C 0.30 16.88 6.42 85.63 0.55 17.43 16 13 C -0.56 -31.09 9.28 25.60 0.24 -30.85 16 14 H 0.07 3.81 7.60 -2.91 -0.02 3.79 16 15 C 0.01 0.50 5.46 84.66 0.46 0.97 16 16 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 17 Si 0.98 42.92 29.54 68.60 2.03 44.94 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 21 C 0.08 2.36 6.73 22.85 0.15 2.51 16 22 O -0.48 -17.16 11.16 -79.13 -0.88 -18.04 16 23 H 0.07 0.73 7.67 -2.39 -0.02 0.71 16 24 H 0.07 0.70 7.65 -2.38 -0.02 0.68 16 25 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.17 2.24 6.27 -2.91 -0.02 2.22 16 27 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 28 H 0.13 3.56 8.02 -2.91 -0.02 3.54 16 29 H 0.38 15.60 8.28 -213.32 -1.77 13.84 16 30 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 31 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 32 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.39 12.11 9.06 -74.06 -0.67 11.43 16 Total: -1.00 -69.12 311.52 1.55 -67.57 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -1.27 Total: 20.41 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 4.04 Total: -10.29 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -1.47 Total: -94.98 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -1.70 Total: -26.73 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -69.12 1.55 -67.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002760917.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.482 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds