Wall clock time and date at job start Wed Apr 15 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47259 * 2 1 4 4 N 1.31234 * 124.05466 * 89.97187 * 3 2 1 5 5 N 1.27336 * 120.03850 * 180.02562 * 4 3 2 6 6 S 1.56637 * 109.74129 * 0.02562 * 5 4 3 7 7 C 1.38241 * 124.05354 * 269.97592 * 3 2 1 8 8 C 1.47179 * 128.47808 * 359.97438 * 7 3 2 9 9 O 1.21614 * 119.99837 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99934 * 180.02562 * 8 7 3 11 11 C 1.46497 * 119.99666 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47139 * 179.97438 * 11 10 8 13 13 O 1.21291 * 119.99544 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00076 * 180.02562 * 12 11 10 15 15 C 1.37100 * 119.99704 * 180.02562 * 14 12 11 16 16 H 1.07997 * 120.00045 * 359.97438 * 15 14 12 17 17 C 1.38956 * 119.99656 * 179.97438 * 15 14 12 18 18 N 1.31411 * 120.00017 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99787 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46892 * 60.00020 * 19 17 15 21 21 H 1.48497 * 109.46996 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47205 * 300.00238 * 19 17 15 23 23 H 1.09013 * 109.47130 * 59.99875 * 1 2 3 24 24 H 1.08991 * 109.47410 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47298 * 300.00251 * 1 2 3 26 26 H 1.08997 * 109.47298 * 239.99748 * 2 1 3 27 27 H 1.08998 * 109.47094 * 119.99606 * 2 1 3 28 28 H 0.97001 * 120.00005 * 359.97438 * 10 8 7 29 29 H 1.08993 * 109.47793 * 299.99917 * 11 10 8 30 30 H 1.09003 * 109.47026 * 60.00099 * 11 10 8 31 31 H 0.96995 * 119.99865 * 359.97438 * 14 12 11 32 32 H 0.96998 * 119.99446 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2768 2.1139 1.0873 5 7 2.6999 3.3116 0.9981 6 16 2.8409 3.7120 -0.5096 7 6 2.2909 2.1505 -1.1453 8 6 2.1446 1.7336 -2.5493 9 8 1.7490 0.6143 -2.8131 10 7 2.4492 2.5923 -3.5424 11 6 2.3041 2.1771 -4.9398 12 6 2.7057 3.3127 -5.8456 13 8 3.0770 4.3651 -5.3704 14 7 2.6522 3.1588 -7.1834 15 6 3.0181 4.1918 -8.0074 16 1 3.3486 5.1288 -7.5843 17 6 2.9634 4.0329 -9.3867 18 7 2.5616 2.8925 -9.9014 19 14 3.4612 5.4405 -10.5093 20 1 4.8760 5.8070 -10.2461 21 1 3.3136 5.0199 -11.9258 22 1 2.5891 6.6139 -10.2485 23 1 -0.3634 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.7644 3.4852 -3.3319 29 1 2.9438 1.3157 -5.1312 30 1 1.2655 1.9085 -5.1331 31 1 2.3557 2.3171 -7.5633 32 1 2.5239 2.7816 -10.8643 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322533041.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:44 Heat of formation + Delta-G solvation = -31.957541 kcal Electronic energy + Delta-G solvation = -19213.711036 eV Core-core repulsion = 15914.892904 eV Total energy + Delta-G solvation = -3298.818133 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.073 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.16447 -40.95205 -39.84809 -36.31261 -35.58115 -35.26640 -33.37547 -31.81932 -29.76723 -28.30071 -26.45100 -24.90575 -23.32708 -21.58617 -21.30260 -20.08452 -19.53120 -18.92021 -17.45951 -17.26332 -16.90524 -16.59593 -16.48562 -15.93878 -15.57964 -15.42602 -15.17751 -15.09217 -14.09851 -13.99266 -13.66540 -13.54048 -13.51011 -13.14622 -12.89188 -12.45480 -12.41735 -12.13161 -11.93022 -11.54867 -11.54481 -11.19750 -11.00541 -10.86749 -10.56314 -10.34052 -10.07954 -8.49928 -5.99705 -1.42785 -0.30117 0.34771 0.77665 1.39200 1.44599 1.54362 1.72386 1.75742 1.92401 2.30488 2.74267 3.09044 3.17819 3.40187 3.56039 4.06819 4.20649 4.34403 4.36929 4.42739 4.43946 4.82003 4.98965 5.05061 5.16416 5.33132 5.39991 5.92465 6.18994 6.48840 6.51449 6.82483 7.05016 7.45200 7.95368 8.66460 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.033086 B = 0.003387 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.064121 B = 8264.038058 C = 9007.576448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 C 0.106 3.894 4 N -0.267 5.267 5 N -0.276 5.276 6 S 0.484 5.516 7 C -0.309 4.309 8 C 0.607 3.393 9 O -0.535 6.535 10 N -0.700 5.700 11 C 0.122 3.878 12 C 0.430 3.570 13 O -0.624 6.624 14 N -0.557 5.557 15 C -0.337 4.337 16 H 0.087 0.913 17 C -0.008 4.008 18 N -0.915 5.915 19 Si 0.994 3.006 20 H -0.270 1.270 21 H -0.273 1.273 22 H -0.270 1.270 23 H 0.044 0.956 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.412 0.588 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.400 0.600 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 -4.100 15.162 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.043 4.043 4 N -0.131 5.131 5 N -0.257 5.257 6 S 0.621 5.379 7 C -0.450 4.450 8 C 0.391 3.609 9 O -0.413 6.413 10 N -0.354 5.354 11 C -0.005 4.005 12 C 0.217 3.783 13 O -0.512 6.512 14 N -0.192 5.192 15 C -0.467 4.467 16 H 0.105 0.895 17 C -0.209 4.209 18 N -0.555 5.555 19 Si 0.817 3.183 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.195 1.195 23 H 0.063 0.937 24 H 0.106 0.894 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.250 0.750 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.234 0.766 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.465 -2.706 16.179 16.469 hybrid contribution -0.158 -0.496 -1.427 1.519 sum -1.622 -3.201 14.752 15.182 Atomic orbital electron populations 1.21644 0.92665 1.03700 1.01502 1.20401 0.97453 0.85415 1.05504 1.23278 0.95965 1.00381 0.84647 1.70668 1.14856 0.99264 1.28351 1.78679 1.18765 1.10784 1.17477 1.82660 1.43718 1.12301 0.99223 1.27634 1.16439 1.01669 0.99238 1.16409 0.77771 0.84507 0.82219 1.90793 1.47014 1.20070 1.83421 1.45551 1.66916 1.17717 1.05193 1.20913 1.04181 0.95815 0.79601 1.20393 0.84542 0.89833 0.83487 1.90485 1.54670 1.30618 1.75413 1.41811 1.57303 1.15678 1.04422 1.19701 1.43547 0.95329 0.88096 0.89468 1.26077 0.96341 1.00200 0.98298 1.69664 1.46225 1.25431 1.14131 0.84969 0.78909 0.77605 0.76787 1.19519 1.19803 1.19529 0.93707 0.89433 0.92346 0.88214 0.87754 0.75014 0.87597 0.87630 0.76565 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.89 71.98 0.71 -1.72 16 2 C -0.05 -0.91 5.95 29.85 0.18 -0.74 16 3 C 0.11 2.50 6.25 42.65 0.27 2.77 16 4 N -0.27 -6.74 11.54 -48.18 -0.56 -7.29 16 5 N -0.28 -6.76 12.51 37.02 0.46 -6.30 16 6 S 0.48 10.11 23.05 -56.49 -1.30 8.80 16 7 C -0.31 -7.56 6.81 24.62 0.17 -7.39 16 8 C 0.61 16.95 7.80 86.59 0.68 17.62 16 9 O -0.53 -16.59 14.89 -4.08 -0.06 -16.65 16 10 N -0.70 -20.55 5.52 -470.37 -2.60 -23.15 16 11 C 0.12 3.91 6.15 85.64 0.53 4.43 16 12 C 0.43 18.33 7.85 87.66 0.69 19.02 16 13 O -0.62 -30.07 15.24 -3.06 -0.05 -30.12 16 14 N -0.56 -26.25 5.29 -306.98 -1.62 -27.88 16 15 C -0.34 -17.78 9.68 84.04 0.81 -16.96 16 16 H 0.09 4.83 7.16 -2.91 -0.02 4.81 16 17 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 18 N -0.91 -46.87 13.05 21.67 0.28 -46.59 16 19 Si 0.99 40.36 29.55 68.60 2.03 42.39 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 2.13 6.47 -2.39 -0.02 2.11 16 27 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.41 12.00 6.87 -92.71 -0.64 11.37 16 29 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.40 18.01 7.90 -92.71 -0.73 17.28 16 32 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 Total: -1.00 -61.53 303.40 0.91 -60.62 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.17 Total: 29.07 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 4.50 Total: 17.09 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -4.03 Total: -111.20 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -0.11 Total: -46.77 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 16 Polarization: 10.11 SS G_CDS: -1.30 Total: 8.80 kcal Total: -61.53 0.91 -60.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322533041.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.665 kcal (2) G-P(sol) polarization free energy of solvation -61.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds