Wall clock time and date at job start Wed Apr 15 2020 11:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30497 * 125.65031 * 2 1 4 4 C 1.34130 * 109.25553 * 179.97438 * 3 2 1 5 5 C 1.34672 * 108.01841 * 359.72962 * 4 3 2 6 6 S 1.76197 * 126.59105 * 180.28504 * 5 4 3 7 7 O 1.42099 * 106.40474 * 23.70541 * 6 5 4 8 8 O 1.42098 * 106.40496 * 156.62267 * 6 5 4 9 9 N 1.65605 * 107.21665 * 270.16393 * 6 5 4 10 10 C 1.36934 * 119.99704 * 90.00219 * 9 6 5 11 11 H 1.08004 * 120.00243 * 7.10660 * 10 9 6 12 12 C 1.38813 * 119.99774 * 187.10841 * 10 9 6 13 13 N 1.31621 * 120.00098 * 25.68451 * 12 10 9 14 14 Si 1.86807 * 120.00144 * 205.68398 * 12 10 9 15 15 H 1.48496 * 109.46665 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47043 * 120.00192 * 14 12 10 17 17 H 1.48494 * 109.47110 * 240.00045 * 14 12 10 18 18 C 1.46497 * 119.99997 * 269.99875 * 9 6 5 19 19 C 1.47202 * 109.47206 * 93.44405 * 18 9 6 20 20 N 4.46821 * 105.95469 * 235.46059 * 2 1 3 21 21 N 1.35037 * 125.64600 * 179.97438 * 2 1 3 22 22 C 1.46500 * 126.40147 * 0.02627 * 21 2 1 23 23 H 1.09005 * 109.46781 * 270.04552 * 1 2 3 24 24 H 1.09002 * 109.47439 * 30.03821 * 1 2 3 25 25 H 1.08996 * 109.47714 * 150.04142 * 1 2 3 26 26 H 1.07997 * 125.98848 * 179.97438 * 4 3 2 27 27 H 0.96999 * 120.00279 * 179.97438 * 13 12 10 28 28 H 1.09003 * 109.47045 * 213.44799 * 18 9 6 29 29 H 1.09004 * 109.47027 * 333.44251 * 18 9 6 30 30 H 1.09002 * 109.47051 * 90.02903 * 22 21 2 31 31 H 1.09001 * 109.47596 * 210.02569 * 22 21 2 32 32 H 1.09001 * 109.47421 * 330.03734 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 0.0006 5 6 3.5925 -0.6643 0.0070 6 16 5.0364 -1.6741 0.0174 7 8 6.0784 -0.8787 0.5660 8 8 4.6460 -2.9269 0.5626 9 7 5.4470 -1.9586 -1.5615 10 6 6.2964 -1.1045 -2.2126 11 1 6.7885 -0.3125 -1.6675 12 6 6.5251 -1.2565 -3.5733 13 7 5.6169 -1.8312 -4.3331 14 14 8.1218 -0.6453 -4.3261 15 1 8.9697 -0.0425 -3.2665 16 1 8.8433 -1.7842 -4.9486 17 1 7.8218 0.3759 -5.3615 18 6 4.9016 -3.1242 -2.2615 19 6 3.6786 -2.7355 -2.9827 20 7 2.7352 -2.4358 -3.5388 21 7 2.2940 -1.0974 0.0005 22 6 1.8424 -2.4910 0.0006 23 1 -0.3633 0.0008 1.0277 24 1 -0.3634 0.8896 -0.5144 25 1 -0.3634 -0.8903 -0.5131 26 1 4.4098 1.3410 0.0003 27 1 5.7765 -1.9371 -5.2840 28 1 5.6386 -3.4992 -2.9717 29 1 4.6644 -3.9044 -1.5381 30 1 1.7313 -2.8370 -1.0271 31 1 2.5766 -3.1109 0.5152 32 1 0.8833 -2.5622 0.5135 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329206081.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:57 Heat of formation + Delta-G solvation = 11.079194 kcal Electronic energy + Delta-G solvation = -21257.158032 eV Core-core repulsion = 17960.206112 eV Total energy + Delta-G solvation = -3296.951920 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.073 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.03859 -38.52706 -37.91257 -36.47041 -36.32669 -34.99334 -33.56152 -32.81008 -29.28422 -28.47318 -27.59147 -25.92734 -23.00915 -21.14195 -20.43065 -19.80214 -18.98342 -18.32275 -17.84565 -16.94839 -16.69831 -16.42915 -16.16907 -15.46055 -15.02403 -14.82506 -14.37046 -14.29329 -14.11628 -13.90549 -13.59824 -13.42885 -13.30278 -13.27109 -13.24393 -12.87485 -12.65027 -12.61934 -12.18997 -12.14823 -12.05920 -11.81559 -11.51984 -11.11975 -10.69325 -10.29414 -9.66924 -8.56120 -5.93126 -0.28728 0.61447 1.51916 1.59105 1.71259 1.78012 1.87882 1.99487 2.26983 2.36547 2.72189 2.80987 3.11763 3.41630 3.56671 3.70568 3.85417 4.02125 4.23380 4.38278 4.41237 4.60256 4.63292 4.69328 4.80536 4.90956 5.10500 5.18157 5.38388 5.55747 6.15231 6.24975 6.61903 6.85755 7.04914 7.05632 8.42609 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.007717 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.415922 B = 3627.468161 C = 3839.649399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.214 3.786 3 N -0.534 5.534 4 C 0.049 3.951 5 C -0.590 4.590 6 S 2.562 3.438 7 O -0.994 6.994 8 O -0.995 6.995 9 N -0.794 5.794 10 C -0.262 4.262 11 H 0.124 0.876 12 C 0.008 3.992 13 N -0.850 5.850 14 Si 0.994 3.006 15 H -0.257 1.257 16 H -0.261 1.261 17 H -0.286 1.286 18 C 0.219 3.781 19 C 0.252 3.748 20 N -0.503 5.503 21 N -0.407 5.407 22 C 0.037 3.963 23 H 0.107 0.893 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.176 0.824 27 H 0.286 0.714 28 H 0.141 0.859 29 H 0.131 0.869 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.808 -4.116 3.062 6.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.050 4.050 3 N -0.255 5.255 4 C -0.105 4.105 5 C -0.780 4.780 6 S 2.659 3.341 7 O -0.983 6.983 8 O -0.985 6.985 9 N -0.617 5.617 10 C -0.410 4.410 11 H 0.141 0.859 12 C -0.203 4.203 13 N -0.490 5.490 14 Si 0.816 3.184 15 H -0.181 1.181 16 H -0.186 1.186 17 H -0.212 1.212 18 C 0.090 3.910 19 C -0.066 4.066 20 N -0.185 5.185 21 N -0.087 5.087 22 C -0.104 4.104 23 H 0.125 0.875 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.193 0.807 27 H 0.096 0.904 28 H 0.159 0.841 29 H 0.149 0.851 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.362 -3.452 3.109 7.095 hybrid contribution 0.666 0.301 -0.745 1.044 sum -4.696 -3.152 2.364 6.129 Atomic orbital electron populations 1.20440 0.81337 1.05306 1.05345 1.24643 0.97798 0.81583 1.01023 1.70180 1.02401 1.29821 1.23077 1.22311 0.95273 0.92253 1.00616 1.35464 1.06579 1.11731 1.24254 1.10955 0.72781 0.72763 0.77589 1.93353 1.54526 1.71019 1.79412 1.93260 1.83463 1.42208 1.79541 1.55572 1.45440 1.28518 1.32181 1.20472 1.11098 1.15643 0.93802 0.85874 1.26282 1.01687 0.96742 0.95576 1.69982 1.32518 1.39159 1.07349 0.84831 0.77139 0.78354 0.78035 1.18097 1.18577 1.21176 1.19363 0.87957 0.87987 0.95725 1.29841 0.92779 0.92115 0.91900 1.80847 1.16738 1.09305 1.11574 1.45037 1.03895 1.08598 1.51121 1.22787 1.04870 0.78094 1.04678 0.87474 0.88732 0.88759 0.80690 0.90355 0.84134 0.85118 0.90764 0.86765 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 9.98 71.24 0.71 -0.84 16 2 C 0.21 7.75 7.90 138.13 1.09 8.84 16 3 N -0.53 -22.64 11.25 -188.13 -2.12 -24.76 16 4 C 0.05 2.16 11.64 83.52 0.97 3.13 16 5 C -0.59 -25.24 7.02 83.09 0.58 -24.65 16 6 S 2.56 109.84 5.74 -56.49 -0.32 109.52 16 7 O -0.99 -47.81 16.64 -128.00 -2.13 -49.94 16 8 O -1.00 -41.02 13.96 -128.00 -1.79 -42.81 16 9 N -0.79 -33.44 2.88 -352.51 -1.02 -34.46 16 10 C -0.26 -11.62 9.47 84.03 0.80 -10.82 16 11 H 0.12 5.55 7.22 -2.91 -0.02 5.52 16 12 C 0.01 0.33 4.91 84.86 0.42 0.75 16 13 N -0.85 -37.09 8.99 21.65 0.19 -36.90 16 14 Si 0.99 34.33 29.63 68.60 2.03 36.37 16 15 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 16 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 17 H -0.29 -10.19 7.11 99.48 0.71 -9.49 16 18 C 0.22 8.13 5.45 84.57 0.46 8.60 16 19 C 0.25 10.42 12.68 89.45 1.13 11.55 16 20 N -0.50 -22.46 18.48 20.00 0.37 -22.09 16 21 N -0.41 -15.17 3.15 -534.53 -1.68 -16.86 16 22 C 0.04 1.08 10.53 127.77 1.35 2.42 16 23 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 24 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.09 1.82 7.70 -2.39 -0.02 1.80 16 26 H 0.18 7.37 8.06 -2.91 -0.02 7.35 16 27 H 0.29 11.86 8.31 -92.71 -0.77 11.09 16 28 H 0.14 5.05 6.47 -2.39 -0.02 5.03 16 29 H 0.13 4.03 6.94 -2.38 -0.02 4.02 16 30 H 0.07 2.23 7.48 -2.39 -0.02 2.21 16 31 H 0.11 3.51 5.62 -2.39 -0.01 3.49 16 32 H 0.13 2.55 7.65 -2.39 -0.02 2.54 16 Total: -1.00 -63.51 293.37 2.21 -61.29 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 1.17 Total: 21.66 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 7.51 Total: -1.02 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -4.25 Total: -135.07 kcal Atomic # 8 Polarization: -88.83 SS G_CDS: -3.92 Total: -92.75 kcal Atomic # 14 Polarization: 34.33 SS G_CDS: 2.03 Total: 36.37 kcal Atomic # 16 Polarization: 109.84 SS G_CDS: -0.32 Total: 109.52 kcal Total: -63.51 2.21 -61.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329206081.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.371 kcal (2) G-P(sol) polarization free energy of solvation -63.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds