Wall clock time and date at job start Wed Apr 15 2020 11:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 120.00515 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00655 * 3 2 1 5 5 H 1.48500 * 109.46628 * 30.00342 * 3 2 1 6 6 H 1.48499 * 109.47411 * 150.00068 * 3 2 1 7 7 C 1.38959 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99517 * 179.97438 * 7 2 1 9 9 N 1.37088 * 120.00163 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00085 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99625 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00033 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47317 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00266 * 180.02562 * 13 12 10 15 15 O 1.21561 * 120.00129 * 0.26795 * 14 13 12 16 16 C 1.47706 * 119.99736 * 179.97438 * 14 13 12 17 17 C 1.39683 * 120.15587 * 359.72129 * 16 14 13 18 18 C 1.37847 * 119.92203 * 179.78997 * 17 16 14 19 19 C 1.38447 * 120.24053 * 0.49008 * 18 17 16 20 20 C 1.38384 * 120.31751 * 359.73938 * 19 18 17 21 21 F 1.35097 * 119.96906 * 180.02562 * 20 19 18 22 22 C 1.38552 * 120.06960 * 0.02562 * 20 19 18 23 23 F 1.35095 * 120.12253 * 179.97438 * 22 20 19 24 24 H 0.97002 * 119.99687 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00444 * 359.97438 * 9 7 2 26 26 H 1.08996 * 109.47258 * 59.99959 * 12 10 9 27 27 H 1.09000 * 109.47247 * 300.00119 * 12 10 9 28 28 H 0.97008 * 119.99402 * 359.97438 * 13 12 10 29 29 H 1.07997 * 120.03690 * 359.97438 * 17 16 14 30 30 H 1.07993 * 119.88088 * 180.20303 * 18 17 16 31 31 H 1.07997 * 119.84304 * 179.76667 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6525 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2435 -4.8630 -0.0010 13 7 2.1954 -5.9765 -0.0017 14 6 1.7461 -7.2472 -0.0019 15 8 0.5510 -7.4693 -0.0064 16 6 2.7059 -8.3699 -0.0032 17 6 4.0799 -8.1184 -0.0102 18 6 4.9714 -9.1698 -0.0070 19 6 4.5101 -10.4751 -0.0072 20 6 3.1510 -10.7357 -0.0051 21 9 2.7086 -12.0122 -0.0048 22 6 2.2434 -9.6888 -0.0034 23 9 0.9164 -9.9420 -0.0019 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3907 0.0002 26 1 0.6159 -4.9205 -0.8902 27 1 0.6179 -4.9209 0.8897 28 1 3.1491 -5.7993 -0.0029 29 1 4.4433 -7.1014 -0.0150 30 1 6.0335 -8.9745 -0.0090 31 1 5.2143 -11.2939 -0.0085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344158729.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:43 Heat of formation + Delta-G solvation = -134.670116 kcal Electronic energy + Delta-G solvation = -21003.327995 eV Core-core repulsion = 17113.922773 eV Total energy + Delta-G solvation = -3889.405222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.65707 -48.69998 -40.16749 -38.66237 -37.94759 -34.60456 -33.81901 -31.72426 -31.37580 -30.67984 -27.81492 -24.99733 -24.00068 -22.95955 -20.72029 -19.76432 -18.72061 -18.09903 -17.57935 -17.36184 -16.58684 -16.58402 -15.66633 -15.41368 -15.34988 -15.09327 -15.02414 -14.58950 -14.48378 -14.07854 -13.90387 -13.47017 -13.25133 -12.45244 -12.44290 -12.18570 -11.99108 -11.98274 -11.67848 -11.16409 -10.49729 -10.36670 -9.99456 -9.68860 -9.49004 -9.08690 -8.92873 -8.71135 -8.15810 -6.56329 -3.98628 0.24535 0.58504 2.54442 2.96438 3.08149 3.19507 3.24610 3.35879 3.51728 3.67610 4.04300 4.06133 4.25367 4.33484 4.53471 4.71153 4.81022 5.12153 5.25574 5.35161 5.54214 5.60578 5.77368 5.83544 5.87460 5.98828 6.31880 6.49195 7.41363 7.58725 7.85964 8.21529 8.39054 8.99126 9.33202 9.80400 10.60386 Molecular weight = 284.08amu Principal moments of inertia in cm(-1) A = 0.042613 B = 0.003068 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.915344 B = 9125.290376 C = 9767.059523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.427 3.573 11 O -0.599 6.599 12 C 0.108 3.892 13 N -0.697 5.697 14 C 0.553 3.447 15 O -0.528 6.528 16 C -0.139 4.139 17 C -0.065 4.065 18 C -0.108 4.108 19 C -0.103 4.103 20 C 0.054 3.946 21 F -0.126 7.126 22 C 0.126 3.874 23 F -0.103 7.103 24 H 0.275 0.725 25 H 0.396 0.604 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.411 0.589 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.851 -17.272 -0.001 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.181 5.181 10 C 0.212 3.788 11 O -0.486 6.486 12 C -0.019 4.019 13 N -0.352 5.352 14 C 0.339 3.661 15 O -0.405 6.405 16 C -0.143 4.143 17 C -0.084 4.084 18 C -0.126 4.126 19 C -0.122 4.122 20 C 0.034 3.966 21 F -0.105 7.105 22 C 0.105 3.895 23 F -0.081 7.081 24 H 0.085 0.915 25 H 0.230 0.770 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.250 0.750 29 H 0.167 0.833 30 H 0.166 0.834 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.558 -17.254 0.002 18.837 hybrid contribution -0.143 0.659 -0.009 0.674 sum 7.415 -16.596 -0.007 18.177 Atomic orbital electron populations 1.69614 1.06046 1.28636 1.48992 1.25344 0.95670 0.99997 0.96654 0.85802 0.79232 0.80413 0.78524 1.20227 1.20769 1.19274 1.19734 0.93483 0.81944 1.48438 0.87602 1.41789 1.09537 1.04461 1.62271 1.19670 0.88267 0.84919 0.85910 1.90485 1.13656 1.86795 1.57667 1.21017 0.91739 0.85461 1.03661 1.45553 1.11827 1.04255 1.73521 1.17792 0.87801 0.82588 0.77943 1.90849 1.15583 1.84631 1.49463 1.20019 0.95014 0.91948 1.07361 1.21489 0.90671 1.01135 0.95072 1.21061 1.01014 0.90875 0.99663 1.21287 0.92702 0.99059 0.99162 1.17558 0.92460 0.78426 1.08140 1.91547 1.89984 1.34810 1.94149 1.17664 0.78443 0.91862 1.01572 1.91630 1.29276 1.94450 1.92767 0.91505 0.76971 0.89447 0.89458 0.74981 0.83262 0.83367 0.83232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.45 13.05 55.50 0.72 -22.72 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.10 29.55 -169.99 -5.02 15.08 16 4 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.31 -8.13 9.68 -14.93 -0.14 -8.27 16 8 H 0.11 2.91 7.16 -52.49 -0.38 2.54 16 9 N -0.55 -13.17 5.29 -10.96 -0.06 -13.23 16 10 C 0.43 9.42 7.85 -10.99 -0.09 9.33 16 11 O -0.60 -14.60 15.24 5.55 0.08 -14.52 16 12 C 0.11 1.93 6.15 -5.20 -0.03 1.90 16 13 N -0.70 -11.16 5.48 -62.48 -0.34 -11.50 16 14 C 0.55 8.92 7.77 -12.39 -0.10 8.82 16 15 O -0.53 -10.25 15.34 5.31 0.08 -10.17 16 16 C -0.14 -1.79 5.88 -104.92 -0.62 -2.41 16 17 C -0.06 -0.61 9.54 -39.19 -0.37 -0.98 16 18 C -0.11 -0.75 10.03 -39.65 -0.40 -1.14 16 19 C -0.10 -0.77 10.01 -39.45 -0.40 -1.16 16 20 C 0.05 0.58 7.30 -39.41 -0.29 0.29 16 21 F -0.13 -1.44 17.18 2.25 0.04 -1.41 16 22 C 0.13 1.67 7.29 -38.89 -0.28 1.39 16 23 F -0.10 -1.64 15.46 2.25 0.03 -1.61 16 24 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 25 H 0.40 9.22 7.90 -40.82 -0.32 8.89 16 26 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.41 6.13 5.47 -40.82 -0.22 5.91 16 29 H 0.15 1.23 6.40 -52.49 -0.34 0.89 16 30 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 292.55 15.07 4.41 4.41 Total: -1.00 -31.52 292.55 -4.94 -36.47 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -2.08 Total: 10.85 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -2.81 Total: 8.35 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.32 Total: -47.45 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: 0.17 Total: -24.69 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.07 Total: -3.01 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.52 -4.94 -36.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344158729.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.201 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds