Wall clock time and date at job start Wed Apr 15 2020 11:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 120.00515 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00655 * 3 2 1 5 5 H 1.48500 * 109.46628 * 30.00342 * 3 2 1 6 6 H 1.48499 * 109.47411 * 150.00068 * 3 2 1 7 7 C 1.38959 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99517 * 179.97438 * 7 2 1 9 9 N 1.37088 * 120.00163 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00085 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99625 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00033 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47317 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00266 * 180.02562 * 13 12 10 15 15 O 1.21561 * 120.00129 * 0.26795 * 14 13 12 16 16 C 1.47706 * 119.99736 * 179.97438 * 14 13 12 17 17 C 1.39683 * 120.15587 * 359.72129 * 16 14 13 18 18 C 1.37847 * 119.92203 * 179.78997 * 17 16 14 19 19 C 1.38447 * 120.24053 * 0.49008 * 18 17 16 20 20 C 1.38384 * 120.31751 * 359.73938 * 19 18 17 21 21 F 1.35097 * 119.96906 * 180.02562 * 20 19 18 22 22 C 1.38552 * 120.06960 * 0.02562 * 20 19 18 23 23 F 1.35095 * 120.12253 * 179.97438 * 22 20 19 24 24 H 0.97002 * 119.99687 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00444 * 359.97438 * 9 7 2 26 26 H 1.08996 * 109.47258 * 59.99959 * 12 10 9 27 27 H 1.09000 * 109.47247 * 300.00119 * 12 10 9 28 28 H 0.97008 * 119.99402 * 359.97438 * 13 12 10 29 29 H 1.07997 * 120.03690 * 359.97438 * 17 16 14 30 30 H 1.07993 * 119.88088 * 180.20303 * 18 17 16 31 31 H 1.07997 * 119.84304 * 179.76667 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6525 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2435 -4.8630 -0.0010 13 7 2.1954 -5.9765 -0.0017 14 6 1.7461 -7.2472 -0.0019 15 8 0.5510 -7.4693 -0.0064 16 6 2.7059 -8.3699 -0.0032 17 6 4.0799 -8.1184 -0.0102 18 6 4.9714 -9.1698 -0.0070 19 6 4.5101 -10.4751 -0.0072 20 6 3.1510 -10.7357 -0.0051 21 9 2.7086 -12.0122 -0.0048 22 6 2.2434 -9.6888 -0.0034 23 9 0.9164 -9.9420 -0.0019 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3907 0.0002 26 1 0.6159 -4.9205 -0.8902 27 1 0.6179 -4.9209 0.8897 28 1 3.1491 -5.7993 -0.0029 29 1 4.4433 -7.1014 -0.0150 30 1 6.0335 -8.9745 -0.0090 31 1 5.2143 -11.2939 -0.0085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344158729.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:40 Heat of formation + Delta-G solvation = -157.276523 kcal Electronic energy + Delta-G solvation = -21004.308283 eV Core-core repulsion = 17113.922773 eV Total energy + Delta-G solvation = -3890.385509 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.58105 -49.65990 -41.37365 -40.14137 -39.18317 -36.30374 -35.45328 -33.40057 -32.54164 -31.46570 -29.30736 -26.65306 -25.13605 -23.77642 -21.91224 -21.43996 -20.18551 -19.64986 -18.56604 -18.33625 -17.73589 -17.53890 -17.18794 -16.76916 -16.74456 -16.35412 -16.08659 -15.81849 -15.74380 -15.46895 -15.39572 -14.95224 -14.03949 -14.01009 -13.72451 -13.54311 -13.13464 -13.05370 -12.90079 -12.82586 -12.45068 -12.11871 -11.56607 -11.27951 -10.57590 -10.46489 -10.15997 -10.08558 -9.89223 -8.51031 -6.01289 -0.59264 -0.19043 1.36942 1.43971 1.55502 1.56292 1.76419 1.89632 2.29757 2.41970 2.65445 3.06952 3.16451 3.22373 3.35040 3.61284 3.71873 4.06839 4.17008 4.35278 4.38172 4.49289 4.66380 4.83805 4.97691 5.08363 5.12238 5.38745 5.59205 5.91029 6.31898 6.47257 6.95075 7.03117 7.43301 7.92434 8.65834 Molecular weight = 284.08amu Principal moments of inertia in cm(-1) A = 0.042613 B = 0.003068 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.915344 B = 9125.290376 C = 9767.059523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.337 4.337 8 H 0.090 0.910 9 N -0.558 5.558 10 C 0.434 3.566 11 O -0.620 6.620 12 C 0.119 3.881 13 N -0.693 5.693 14 C 0.554 3.446 15 O -0.569 6.569 16 C -0.160 4.160 17 C -0.059 4.059 18 C -0.086 4.086 19 C -0.079 4.079 20 C 0.045 3.955 21 F -0.134 7.134 22 C 0.093 3.907 23 F -0.131 7.131 24 H 0.280 0.720 25 H 0.398 0.602 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.417 0.583 29 H 0.161 0.839 30 H 0.194 0.806 31 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.467 -17.789 -0.014 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.108 0.892 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.508 6.508 12 C -0.008 4.008 13 N -0.348 5.348 14 C 0.342 3.658 15 O -0.450 6.450 16 C -0.164 4.164 17 C -0.078 4.078 18 C -0.104 4.104 19 C -0.097 4.097 20 C 0.025 3.975 21 F -0.113 7.113 22 C 0.072 3.928 23 F -0.109 7.109 24 H 0.089 0.911 25 H 0.233 0.767 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.258 0.742 29 H 0.179 0.821 30 H 0.211 0.789 31 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 10.187 -17.788 -0.012 20.498 hybrid contribution -0.853 0.713 -0.006 1.112 sum 9.334 -17.075 -0.017 19.460 Atomic orbital electron populations 1.69685 1.07100 1.29654 1.49260 1.26150 0.96506 1.02771 0.95754 0.84856 0.77977 0.76405 0.78702 1.19583 1.19878 1.19188 1.19766 0.93073 0.83410 1.50327 0.89236 1.41844 1.09626 1.04634 1.63261 1.20273 0.88126 0.85692 0.83775 1.90460 1.14853 1.87453 1.58050 1.20839 0.91652 0.83783 1.04553 1.45488 1.11773 1.03902 1.73642 1.18289 0.87917 0.83047 0.76580 1.90819 1.17552 1.85177 1.51417 1.19807 0.95818 0.90413 1.10399 1.21736 0.89286 1.02749 0.94022 1.21573 1.02645 0.89583 0.96576 1.21794 0.91440 1.00633 0.95832 1.17809 0.93399 0.77505 1.08777 1.91527 1.90312 1.35138 1.94299 1.18067 0.77830 0.93031 1.03881 1.91547 1.31363 1.94664 1.93352 0.91091 0.76741 0.88565 0.88569 0.74221 0.82112 0.78856 0.79278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.17 13.05 21.67 0.28 -47.89 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 1.00 40.83 29.55 68.60 2.03 42.85 16 4 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 7 C -0.34 -18.06 9.68 84.04 0.81 -17.24 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -27.32 5.29 -306.99 -1.62 -28.94 16 10 C 0.43 19.27 7.85 87.66 0.69 19.96 16 11 O -0.62 -30.21 15.24 -3.06 -0.05 -30.25 16 12 C 0.12 4.26 6.15 85.63 0.53 4.78 16 13 N -0.69 -22.05 5.48 -469.87 -2.57 -24.62 16 14 C 0.55 18.11 7.77 86.75 0.67 18.78 16 15 O -0.57 -22.96 15.34 -3.91 -0.06 -23.02 16 16 C -0.16 -4.05 5.88 -20.06 -0.12 -4.17 16 17 C -0.06 -0.95 9.54 22.53 0.21 -0.74 16 18 C -0.09 -0.77 10.03 22.23 0.22 -0.55 16 19 C -0.08 -0.83 10.01 22.35 0.22 -0.61 16 20 C 0.05 0.90 7.30 22.38 0.16 1.06 16 21 F -0.13 -2.94 17.18 44.97 0.77 -2.17 16 22 C 0.09 2.49 7.29 22.71 0.17 2.66 16 23 F -0.13 -4.42 15.46 44.97 0.70 -3.72 16 24 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 25 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 26 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 27 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 28 H 0.42 12.11 5.47 -92.70 -0.51 11.60 16 29 H 0.16 2.19 6.40 -2.91 -0.02 2.17 16 30 H 0.19 0.14 8.06 -2.91 -0.02 0.11 16 31 H 0.19 0.58 8.06 -2.91 -0.02 0.55 16 Total: -1.00 -70.52 292.55 3.50 -67.02 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -0.01 Total: 26.92 kcal Atomic # 6 Polarization: 19.79 SS G_CDS: 4.04 Total: 23.83 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -3.91 Total: -101.45 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -0.11 Total: -53.28 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 1.47 Total: -5.89 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -70.52 3.50 -67.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344158729.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.258 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds