Wall clock time and date at job start Wed Apr 15 2020 11:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99864 * 2 1 4 4 H 1.48499 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46906 * 300.00130 * 3 2 1 6 6 H 1.48496 * 109.47084 * 60.00421 * 3 2 1 7 7 C 1.37872 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00266 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99996 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47464 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00086 * 180.02562 * 10 9 7 12 12 O 1.21354 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.49341 * 119.99688 * 179.97438 * 11 10 9 14 14 O 1.21387 * 120.00323 * 359.97438 * 13 11 10 15 15 N 1.34773 * 119.99729 * 179.97438 * 13 11 10 16 16 C 1.39924 * 120.00031 * 185.06241 * 15 13 11 17 17 C 1.39054 * 120.09695 * 89.12233 * 16 15 13 18 18 F 1.35102 * 120.04587 * 359.70372 * 17 16 15 19 19 C 1.38325 * 119.90929 * 179.97438 * 17 16 15 20 20 C 1.38275 * 120.09152 * 359.97438 * 19 17 16 21 21 C 1.38278 * 120.19090 * 0.02562 * 20 19 17 22 22 C 1.38327 * 120.08777 * 359.97438 * 21 20 19 23 23 F 1.35101 * 120.04450 * 180.02562 * 22 21 20 24 24 H 0.97002 * 120.00034 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47488 * 59.99996 * 9 7 2 26 26 H 1.09005 * 109.47381 * 299.99844 * 9 7 2 27 27 H 0.97003 * 119.99352 * 359.97438 * 10 9 7 28 28 H 0.97006 * 120.00207 * 5.06148 * 15 13 11 29 29 H 1.08000 * 119.95495 * 180.02562 * 19 17 16 30 30 H 1.08002 * 119.90665 * 180.02562 * 20 19 17 31 31 H 1.07992 * 119.95706 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5608 -5.1051 -0.0011 13 6 2.7244 -6.0184 -0.0016 14 8 3.9178 -5.7966 -0.0021 15 7 2.2751 -7.2891 -0.0016 16 6 3.1800 -8.3510 0.1048 17 6 3.5453 -8.8331 1.3569 18 9 3.0316 -8.2727 2.4737 19 6 4.4397 -9.8834 1.4575 20 6 4.9700 -10.4544 0.3152 21 6 4.6095 -9.9781 -0.9319 22 6 3.7157 -8.9281 -1.0415 23 9 3.3636 -8.4639 -2.2604 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 3.1568 -3.4353 -0.0009 28 1 1.3245 -7.4674 -0.0754 29 1 4.7237 -10.2587 2.4296 30 1 5.6678 -11.2746 0.3972 31 1 5.0262 -10.4266 -1.8216 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427906684.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:03 Heat of formation + Delta-G solvation = -130.481679 kcal Electronic energy + Delta-G solvation = -21339.901241 eV Core-core repulsion = 17450.677643 eV Total energy + Delta-G solvation = -3889.223598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.26163 -49.23902 -40.54098 -39.07156 -37.87099 -35.33721 -34.22709 -32.37560 -30.72441 -30.05553 -27.74181 -25.06155 -23.25724 -23.11868 -21.82199 -20.11081 -18.91628 -18.48720 -17.64547 -17.50957 -16.54599 -16.03690 -15.94569 -15.78009 -15.54611 -15.33920 -15.11539 -14.99839 -14.65716 -14.23198 -13.67447 -13.16057 -13.10111 -12.47122 -12.34459 -12.20407 -12.06942 -11.90354 -11.38681 -10.99130 -10.94223 -10.33760 -9.76237 -9.50301 -9.45232 -9.13926 -9.08324 -8.83621 -8.11494 -6.21955 -4.29227 0.47381 0.58414 1.70593 2.52060 2.95231 3.23140 3.30489 3.34658 3.43490 3.59439 4.01659 4.03288 4.29430 4.32451 4.46728 4.69598 5.00599 5.13735 5.14893 5.41398 5.46215 5.58434 5.72892 6.00195 6.44568 6.89526 7.08409 7.15614 7.36332 7.54784 7.82104 7.86976 8.37226 8.55756 8.82639 9.37084 10.88186 Molecular weight = 284.08amu Principal moments of inertia in cm(-1) A = 0.032037 B = 0.003436 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.766041 B = 8148.103755 C = 8264.453868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.246 3.754 10 N -0.670 5.670 11 C 0.495 3.505 12 O -0.533 6.533 13 C 0.516 3.484 14 O -0.507 6.507 15 N -0.662 5.662 16 C 0.065 3.935 17 C 0.140 3.860 18 F -0.120 7.120 19 C -0.161 4.161 20 C -0.055 4.055 21 C -0.161 4.161 22 C 0.141 3.859 23 F -0.121 7.121 24 H 0.267 0.733 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.404 0.596 28 H 0.426 0.574 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.126 -22.452 0.535 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.126 3.874 10 N -0.319 5.319 11 C 0.273 3.727 12 O -0.412 6.412 13 C 0.299 3.701 14 O -0.379 6.379 15 N -0.317 5.317 16 C -0.029 4.029 17 C 0.119 3.881 18 F -0.098 7.098 19 C -0.180 4.180 20 C -0.073 4.073 21 C -0.180 4.180 22 C 0.120 3.880 23 F -0.099 7.099 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.239 0.761 28 H 0.266 0.734 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.910 -22.165 0.543 23.895 hybrid contribution 0.209 1.098 -0.050 1.119 sum 9.118 -21.067 0.493 22.961 Atomic orbital electron populations 1.69977 1.06116 1.27408 1.48733 1.24942 0.94957 0.99539 0.94465 0.86303 0.79927 0.82609 0.77780 1.19491 1.20715 1.20722 1.21241 0.93562 0.90067 1.53545 0.91476 1.19373 0.88136 0.81426 0.98458 1.46425 1.12746 1.04908 1.67815 1.19565 0.87985 0.84383 0.80772 1.90733 1.15657 1.84487 1.50342 1.21019 0.89368 0.83963 0.75745 1.90753 1.16560 1.84507 1.46094 1.42877 1.10640 1.03105 1.75069 1.17454 0.99994 0.94154 0.91310 1.17732 0.95166 0.93772 0.81447 1.91572 1.85025 1.83938 1.49313 1.21182 0.98679 0.96968 1.01179 1.20934 0.97502 0.98532 0.90374 1.21184 0.99405 0.97423 1.00027 1.17726 0.96104 0.94518 0.79624 1.91565 1.90289 1.87666 1.40354 0.92371 0.94630 0.94646 0.76073 0.73427 0.83399 0.83448 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.55 -14.88 9.28 -34.44 -0.32 -15.20 16 8 H 0.07 1.74 7.60 -52.48 -0.40 1.34 16 9 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 10 N -0.67 -14.91 5.54 -61.94 -0.34 -15.25 16 11 C 0.49 10.34 7.89 -11.64 -0.09 10.25 16 12 O -0.53 -12.13 16.48 5.49 0.09 -12.04 16 13 C 0.52 9.40 7.85 -11.64 -0.09 9.31 16 14 O -0.51 -9.97 16.46 5.46 0.09 -9.88 16 15 N -0.66 -9.91 4.91 -10.19 -0.05 -9.96 16 16 C 0.07 0.85 5.30 -83.56 -0.44 0.40 16 17 C 0.14 1.62 7.31 -39.25 -0.29 1.33 16 18 F -0.12 -1.60 17.08 2.25 0.04 -1.56 16 19 C -0.16 -1.26 10.02 -39.54 -0.40 -1.66 16 20 C -0.06 -0.34 10.04 -39.55 -0.40 -0.74 16 21 C -0.16 -1.26 10.02 -39.53 -0.40 -1.65 16 22 C 0.14 1.63 7.31 -39.24 -0.29 1.34 16 23 F -0.12 -1.58 17.08 2.25 0.04 -1.54 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.40 8.39 7.79 -40.82 -0.32 8.07 16 28 H 0.43 5.72 8.30 -40.82 -0.34 5.39 16 29 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 30 H 0.15 0.39 8.06 -52.49 -0.42 -0.04 16 31 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 300.03 15.07 4.52 4.52 Total: -1.00 -32.43 300.03 -5.04 -37.46 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -2.30 Total: 5.84 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: -2.83 Total: 11.52 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.34 Total: -50.21 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.18 Total: -21.92 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.43 -5.04 -37.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427906684.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.019 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds