Wall clock time and date at job start Wed Apr 15 2020 11:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99864 * 2 1 4 4 H 1.48499 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46906 * 300.00130 * 3 2 1 6 6 H 1.48496 * 109.47084 * 60.00421 * 3 2 1 7 7 C 1.37872 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00266 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99996 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47464 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00086 * 180.02562 * 10 9 7 12 12 O 1.21354 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.49341 * 119.99688 * 179.97438 * 11 10 9 14 14 O 1.21387 * 120.00323 * 359.97438 * 13 11 10 15 15 N 1.34773 * 119.99729 * 179.97438 * 13 11 10 16 16 C 1.39924 * 120.00031 * 185.06241 * 15 13 11 17 17 C 1.39054 * 120.09695 * 89.12233 * 16 15 13 18 18 F 1.35102 * 120.04587 * 359.70372 * 17 16 15 19 19 C 1.38325 * 119.90929 * 179.97438 * 17 16 15 20 20 C 1.38275 * 120.09152 * 359.97438 * 19 17 16 21 21 C 1.38278 * 120.19090 * 0.02562 * 20 19 17 22 22 C 1.38327 * 120.08777 * 359.97438 * 21 20 19 23 23 F 1.35101 * 120.04450 * 180.02562 * 22 21 20 24 24 H 0.97002 * 120.00034 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47488 * 59.99996 * 9 7 2 26 26 H 1.09005 * 109.47381 * 299.99844 * 9 7 2 27 27 H 0.97003 * 119.99352 * 359.97438 * 10 9 7 28 28 H 0.97006 * 120.00207 * 5.06148 * 15 13 11 29 29 H 1.08000 * 119.95495 * 180.02562 * 19 17 16 30 30 H 1.08002 * 119.90665 * 180.02562 * 20 19 17 31 31 H 1.07992 * 119.95706 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5608 -5.1051 -0.0011 13 6 2.7244 -6.0184 -0.0016 14 8 3.9178 -5.7966 -0.0021 15 7 2.2751 -7.2891 -0.0016 16 6 3.1800 -8.3510 0.1048 17 6 3.5453 -8.8331 1.3569 18 9 3.0316 -8.2727 2.4737 19 6 4.4397 -9.8834 1.4575 20 6 4.9700 -10.4544 0.3152 21 6 4.6095 -9.9781 -0.9319 22 6 3.7157 -8.9281 -1.0415 23 9 3.3636 -8.4639 -2.2604 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 3.1568 -3.4353 -0.0009 28 1 1.3245 -7.4674 -0.0754 29 1 4.7237 -10.2587 2.4296 30 1 5.6678 -11.2746 0.3972 31 1 5.0262 -10.4266 -1.8216 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427906684.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:03 Heat of formation + Delta-G solvation = -154.429727 kcal Electronic energy + Delta-G solvation = -21340.939706 eV Core-core repulsion = 17450.677643 eV Total energy + Delta-G solvation = -3890.262063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.076 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -50.16854 -50.14258 -41.98056 -40.22247 -39.26757 -36.78893 -35.92742 -34.41176 -31.42591 -31.01445 -29.73439 -26.61631 -24.64371 -24.01008 -23.20993 -21.70267 -20.46374 -19.44756 -18.61482 -18.51178 -18.37894 -17.43020 -17.10060 -16.99245 -16.79518 -16.74735 -16.45907 -16.08759 -15.85948 -15.40828 -15.34371 -14.94331 -14.12304 -14.02141 -13.86750 -13.17669 -13.14039 -13.05096 -12.92427 -12.83613 -12.77427 -12.25122 -11.53199 -11.00539 -10.92488 -10.88361 -10.12321 -10.10565 -9.87026 -8.33781 -6.50389 -0.29711 -0.12685 0.12702 1.15623 1.43395 1.43479 1.57892 1.95730 2.26086 2.33470 2.53656 2.69376 3.01546 3.30090 3.34597 3.72383 3.75774 4.13339 4.23782 4.66143 4.89947 4.92229 4.96711 5.04417 5.12468 5.12688 5.18439 5.44237 5.63749 5.70527 5.75274 6.33440 6.52290 6.63574 6.91155 7.22470 8.78237 Molecular weight = 284.08amu Principal moments of inertia in cm(-1) A = 0.032037 B = 0.003436 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.766041 B = 8148.103755 C = 8264.453868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.262 3.738 10 N -0.671 5.671 11 C 0.495 3.505 12 O -0.555 6.555 13 C 0.526 3.474 14 O -0.523 6.523 15 N -0.647 5.647 16 C 0.027 3.973 17 C 0.114 3.886 18 F -0.139 7.139 19 C -0.147 4.147 20 C -0.032 4.032 21 C -0.147 4.147 22 C 0.116 3.884 23 F -0.138 7.138 24 H 0.271 0.729 25 H 0.007 0.993 26 H 0.006 0.994 27 H 0.413 0.587 28 H 0.429 0.571 29 H 0.178 0.822 30 H 0.198 0.802 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.872 -24.230 0.685 26.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.600 4.600 8 H 0.098 0.902 9 C 0.141 3.859 10 N -0.321 5.321 11 C 0.275 3.725 12 O -0.434 6.434 13 C 0.307 3.693 14 O -0.397 6.397 15 N -0.300 5.300 16 C -0.066 4.066 17 C 0.093 3.907 18 F -0.117 7.117 19 C -0.166 4.166 20 C -0.050 4.050 21 C -0.166 4.166 22 C 0.095 3.905 23 F -0.116 7.116 24 H 0.080 0.920 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.249 0.751 28 H 0.270 0.730 29 H 0.196 0.804 30 H 0.215 0.785 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 11.665 -24.006 0.693 26.699 hybrid contribution -0.641 1.445 -0.089 1.583 sum 11.024 -22.561 0.604 25.118 Atomic orbital electron populations 1.70108 1.08007 1.28753 1.49447 1.25987 0.95839 1.03633 0.93573 0.85104 0.78888 0.77292 0.77922 1.18179 1.20122 1.20135 1.21585 0.94280 0.90487 1.53695 0.90226 1.18883 0.88307 0.83036 0.95690 1.46172 1.12510 1.04775 1.68626 1.20071 0.88300 0.84781 0.79332 1.90711 1.16939 1.84961 1.50833 1.20274 0.88276 0.84307 0.76397 1.90735 1.16620 1.84794 1.47582 1.42698 1.11452 1.02682 1.73201 1.17797 1.01458 0.94450 0.92876 1.18105 0.96818 0.95449 0.80339 1.91522 1.85594 1.84564 1.50036 1.21636 0.96542 0.94984 1.03434 1.21548 0.96402 0.98330 0.88680 1.21641 0.97314 0.95475 1.02170 1.18086 0.97693 0.96164 0.78515 1.91518 1.90718 1.88184 1.41211 0.91969 0.97547 0.97600 0.75068 0.73049 0.80440 0.78460 0.80407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 2 C 0.01 0.56 5.46 84.65 0.46 1.02 16 3 Si 0.98 42.77 29.54 68.60 2.03 44.80 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.56 -31.19 9.28 25.60 0.24 -30.96 16 8 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.26 14.46 5.43 85.63 0.46 14.92 16 10 N -0.67 -31.04 5.54 -468.24 -2.59 -33.63 16 11 C 0.50 21.60 7.89 87.24 0.69 22.28 16 12 O -0.55 -26.46 16.48 -3.26 -0.05 -26.52 16 13 C 0.53 19.71 7.85 87.24 0.68 20.39 16 14 O -0.52 -20.88 16.46 -3.36 -0.06 -20.93 16 15 N -0.65 -19.97 4.91 -304.49 -1.49 -21.47 16 16 C 0.03 0.71 5.30 38.24 0.20 0.91 16 17 C 0.11 2.51 7.31 22.49 0.16 2.68 16 18 F -0.14 -3.70 17.08 44.97 0.77 -2.93 16 19 C -0.15 -1.78 10.02 22.30 0.22 -1.56 16 20 C -0.03 -0.23 10.04 22.29 0.22 -0.01 16 21 C -0.15 -1.76 10.02 22.30 0.22 -1.54 16 22 C 0.12 2.54 7.31 22.49 0.16 2.71 16 23 F -0.14 -3.61 17.08 44.97 0.77 -2.84 16 24 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 25 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.01 0.36 8.14 -2.38 -0.02 0.35 16 27 H 0.41 17.57 7.79 -92.71 -0.72 16.85 16 28 H 0.43 12.15 8.30 -92.70 -0.77 11.38 16 29 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 30 H 0.20 -0.43 8.06 -2.91 -0.02 -0.45 16 31 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -73.44 300.03 3.12 -70.32 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -0.27 Total: 17.05 kcal Atomic # 6 Polarization: 27.12 SS G_CDS: 3.74 Total: 30.86 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -3.80 Total: -109.81 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -0.11 Total: -47.45 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 1.54 Total: -5.77 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.44 3.12 -70.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427906684.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.105 kcal (2) G-P(sol) polarization free energy of solvation -73.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds