Wall clock time and date at job start Wed Apr 15 2020 11:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00258 * 2 1 4 4 H 1.48499 * 109.47365 * 240.00325 * 3 2 1 5 5 H 1.48501 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47057 * 120.00255 * 3 2 1 7 7 C 1.37877 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00466 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.87497 * 62.38641 * 9 7 2 11 11 C 1.55140 * 110.99000 * 298.54898 * 9 7 2 12 12 C 1.54319 * 103.02192 * 206.25259 * 11 9 7 13 13 N 1.47443 * 107.22972 * 22.28049 * 12 11 9 14 14 C 1.38705 * 111.00385 * 123.26011 * 13 12 11 15 15 N 1.33179 * 120.49192 * 240.11323 * 14 13 12 16 16 C 1.31731 * 120.88756 * 180.28398 * 15 14 13 17 17 N 1.31765 * 121.93094 * 359.72760 * 16 15 14 18 18 C 1.33152 * 120.88485 * 359.97438 * 17 16 15 19 19 N 1.38701 * 120.48993 * 180.02562 * 18 17 16 20 20 C 1.39199 * 120.48520 * 59.86602 * 14 13 12 21 21 Cl 1.73599 * 120.87627 * 0.02562 * 20 14 13 22 22 C 1.47846 * 108.57120 * 0.99248 * 13 12 11 23 23 H 0.97003 * 120.00088 * 359.97438 * 1 2 3 24 24 H 0.96699 * 113.99849 * 297.61920 * 10 9 7 25 25 H 1.08999 * 110.71152 * 87.86710 * 11 9 7 26 26 H 1.09003 * 110.85202 * 324.70282 * 11 9 7 27 27 H 1.08997 * 109.88763 * 262.87513 * 12 11 9 28 28 H 1.08995 * 109.88949 * 141.68193 * 12 11 9 29 29 H 1.08001 * 119.03995 * 179.70511 * 16 15 14 30 30 H 0.96999 * 119.99847 * 179.97438 * 19 18 17 31 31 H 0.96996 * 120.00297 * 359.97438 * 19 18 17 32 32 H 1.08989 * 110.37804 * 94.73207 * 22 13 12 33 33 H 1.09001 * 110.37375 * 217.07787 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4599 -2.6305 -1.1834 11 6 0.3741 -2.6347 1.2721 12 6 0.2540 -4.1628 1.4505 13 7 1.3921 -4.7761 0.7417 14 6 2.1422 -5.5688 1.5978 15 7 3.4282 -5.2995 1.8153 16 6 4.1492 -6.0504 2.6224 17 7 3.6373 -7.0894 3.2505 18 6 2.3578 -7.4221 3.0912 19 7 1.8273 -8.5172 3.7568 20 6 1.5605 -6.6546 2.2461 21 17 -0.1131 -7.0459 2.0021 22 6 2.2185 -3.6986 0.1570 23 1 -0.4850 0.8401 0.0004 24 1 -0.2256 -1.9547 -1.2751 25 1 -0.6069 -2.1868 1.1138 26 1 0.8676 -2.1838 2.1331 27 1 -0.6838 -4.5138 1.0199 28 1 0.2963 -4.4169 2.5096 29 1 5.1907 -5.8076 2.7735 30 1 0.8942 -8.7529 3.6359 31 1 2.3893 -9.0473 4.3433 32 1 3.0365 -3.4404 0.8294 33 1 2.6068 -4.0031 -0.8149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591973702.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:48 Heat of formation + Delta-G solvation = 11.392377 kcal Electronic energy + Delta-G solvation = -20582.081302 eV Core-core repulsion = 17283.099257 eV Total energy + Delta-G solvation = -3298.982045 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99298 -38.55204 -36.53360 -35.69300 -34.61592 -32.16374 -32.02252 -30.40322 -28.78698 -28.15585 -24.97122 -24.01672 -22.80270 -20.63763 -19.74919 -18.12946 -17.90177 -16.91457 -15.98073 -15.85232 -15.51811 -15.05438 -14.90211 -14.53920 -14.20962 -13.93156 -12.78369 -12.70619 -12.33110 -12.10080 -11.73942 -11.56000 -11.45107 -11.23938 -10.97080 -10.95043 -10.64349 -10.49480 -10.43082 -10.10327 -9.67400 -9.27783 -9.02957 -8.62455 -8.45105 -8.15583 -7.87983 -6.23038 -4.30581 1.06627 1.44300 2.27754 3.19061 3.24788 3.29339 3.32843 3.78398 4.01863 4.29608 4.35188 4.82858 5.03500 5.09257 5.23157 5.55197 5.83233 5.85648 6.04100 6.16980 6.42372 6.52827 6.65652 6.86033 6.94797 6.99349 7.16345 7.36775 7.41345 7.51564 7.62848 7.79413 8.10785 8.37977 8.71852 9.37073 9.46939 10.84374 Molecular weight = 284.08amu Principal moments of inertia in cm(-1) A = 0.028257 B = 0.005171 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.680505 B = 5413.065326 C = 6020.436494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.533 4.533 8 H 0.064 0.936 9 C 0.251 3.749 10 O -0.580 6.580 11 C -0.144 4.144 12 C 0.058 3.942 13 N -0.459 5.459 14 C 0.404 3.596 15 N -0.576 5.576 16 C 0.362 3.638 17 N -0.596 5.596 18 C 0.462 3.538 19 N -0.834 5.834 20 C -0.238 4.238 21 Cl -0.050 7.050 22 C 0.060 3.940 23 H 0.267 0.733 24 H 0.378 0.622 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.200 0.800 30 H 0.411 0.589 31 H 0.408 0.592 32 H 0.091 0.909 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 -12.907 7.417 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.211 3.789 10 O -0.388 6.388 11 C -0.183 4.183 12 C -0.067 4.067 13 N -0.173 5.173 14 C 0.165 3.835 15 N -0.301 5.301 16 C 0.071 3.929 17 N -0.324 5.324 18 C 0.217 3.783 19 N -0.379 5.379 20 C -0.278 4.278 21 Cl -0.022 7.022 22 C -0.065 4.065 23 H 0.077 0.923 24 H 0.228 0.772 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.216 0.784 30 H 0.243 0.757 31 H 0.238 0.762 32 H 0.109 0.891 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.040 -13.351 6.956 15.192 hybrid contribution -0.807 1.139 0.671 1.549 sum 1.233 -12.212 7.627 14.451 Atomic orbital electron populations 1.69714 1.05956 1.27594 1.50286 1.24986 0.94988 0.99444 0.93594 0.86507 0.79564 0.82226 0.78849 1.19981 1.21198 1.20122 1.21449 0.93675 0.90294 1.51749 0.91808 1.19571 0.86712 0.90871 0.81765 1.86157 1.51410 1.56755 1.44442 1.23346 1.03332 0.90490 1.01172 1.22982 0.91970 0.96440 0.95279 1.60349 1.09400 1.22385 1.25191 1.20055 0.88946 0.90411 0.84114 1.68574 1.06400 1.32235 1.22854 1.24575 0.99570 0.83674 0.85039 1.68079 1.10392 1.22594 1.31348 1.18015 0.88056 0.85994 0.86219 1.42186 1.14847 1.29839 1.51019 1.21300 0.89027 1.04869 1.12653 1.98315 1.14178 1.93364 1.96299 1.23234 0.95674 0.88278 0.99361 0.92280 0.77232 0.89572 0.92008 0.90119 0.93336 0.78384 0.75699 0.76187 0.89059 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.41 10.75 55.43 0.60 -22.82 16 2 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 3 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.53 -14.09 8.27 -34.44 -0.28 -14.37 16 8 H 0.06 1.68 7.79 -52.48 -0.41 1.27 16 9 C 0.25 6.16 0.87 -89.63 -0.08 6.08 16 10 O -0.58 -14.89 13.16 -35.23 -0.46 -15.36 16 11 C -0.14 -3.26 5.37 -24.91 -0.13 -3.40 16 12 C 0.06 1.14 5.11 -2.84 -0.01 1.12 16 13 N -0.46 -9.28 4.99 -169.86 -0.85 -10.13 16 14 C 0.40 7.44 6.15 -154.62 -0.95 6.49 16 15 N -0.58 -10.13 8.32 -13.85 -0.12 -10.24 16 16 C 0.36 5.21 12.28 -92.23 -1.13 4.08 16 17 N -0.60 -8.47 10.47 -13.84 -0.14 -8.62 16 18 C 0.46 6.45 7.82 -154.63 -1.21 5.25 16 19 N -0.83 -8.19 9.03 31.22 0.28 -7.91 16 20 C -0.24 -3.79 5.91 -38.85 -0.23 -4.02 16 21 Cl -0.05 -0.71 25.25 -51.86 -1.31 -2.02 16 22 C 0.06 1.33 5.56 -2.30 -0.01 1.32 16 23 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 24 H 0.38 9.71 7.56 45.56 0.34 10.06 16 25 H 0.09 2.03 7.54 -51.93 -0.39 1.64 16 26 H 0.06 1.44 8.04 -51.93 -0.42 1.02 16 27 H 0.08 1.55 7.89 -51.93 -0.41 1.14 16 28 H 0.05 0.89 6.87 -51.93 -0.36 0.54 16 29 H 0.20 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.41 3.49 7.61 -40.82 -0.31 3.18 16 31 H 0.41 3.12 8.95 -40.82 -0.37 2.76 16 32 H 0.09 2.04 6.47 -51.94 -0.34 1.71 16 33 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 288.67 15.07 4.35 4.35 Total: -1.00 -28.57 288.67 -9.44 -38.02 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -2.63 Total: 14.98 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -4.14 Total: 4.33 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.23 Total: -59.71 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.46 Total: -15.36 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.31 Total: -2.02 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.57 -9.44 -38.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973702.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.408 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds