Wall clock time and date at job start Wed Apr 15 2020 11:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00258 * 2 1 4 4 H 1.48499 * 109.47365 * 240.00325 * 3 2 1 5 5 H 1.48501 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47057 * 120.00255 * 3 2 1 7 7 C 1.37877 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00466 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.87497 * 62.38641 * 9 7 2 11 11 C 1.55140 * 110.99000 * 298.54898 * 9 7 2 12 12 C 1.54319 * 103.02192 * 206.25259 * 11 9 7 13 13 N 1.47443 * 107.22972 * 22.28049 * 12 11 9 14 14 C 1.38705 * 111.00385 * 123.26011 * 13 12 11 15 15 N 1.33179 * 120.49192 * 240.11323 * 14 13 12 16 16 C 1.31731 * 120.88756 * 180.28398 * 15 14 13 17 17 N 1.31765 * 121.93094 * 359.72760 * 16 15 14 18 18 C 1.33152 * 120.88485 * 359.97438 * 17 16 15 19 19 N 1.38701 * 120.48993 * 180.02562 * 18 17 16 20 20 C 1.39199 * 120.48520 * 59.86602 * 14 13 12 21 21 Cl 1.73599 * 120.87627 * 0.02562 * 20 14 13 22 22 C 1.47846 * 108.57120 * 0.99248 * 13 12 11 23 23 H 0.97003 * 120.00088 * 359.97438 * 1 2 3 24 24 H 0.96699 * 113.99849 * 297.61920 * 10 9 7 25 25 H 1.08999 * 110.71152 * 87.86710 * 11 9 7 26 26 H 1.09003 * 110.85202 * 324.70282 * 11 9 7 27 27 H 1.08997 * 109.88763 * 262.87513 * 12 11 9 28 28 H 1.08995 * 109.88949 * 141.68193 * 12 11 9 29 29 H 1.08001 * 119.03995 * 179.70511 * 16 15 14 30 30 H 0.96999 * 119.99847 * 179.97438 * 19 18 17 31 31 H 0.96996 * 120.00297 * 359.97438 * 19 18 17 32 32 H 1.08989 * 110.37804 * 94.73207 * 22 13 12 33 33 H 1.09001 * 110.37375 * 217.07787 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4599 -2.6305 -1.1834 11 6 0.3741 -2.6347 1.2721 12 6 0.2540 -4.1628 1.4505 13 7 1.3921 -4.7761 0.7417 14 6 2.1422 -5.5688 1.5978 15 7 3.4282 -5.2995 1.8153 16 6 4.1492 -6.0504 2.6224 17 7 3.6373 -7.0894 3.2505 18 6 2.3578 -7.4221 3.0912 19 7 1.8273 -8.5172 3.7568 20 6 1.5605 -6.6546 2.2461 21 17 -0.1131 -7.0459 2.0021 22 6 2.2185 -3.6986 0.1570 23 1 -0.4850 0.8401 0.0004 24 1 -0.2256 -1.9547 -1.2751 25 1 -0.6069 -2.1868 1.1138 26 1 0.8676 -2.1838 2.1331 27 1 -0.6838 -4.5138 1.0199 28 1 0.2963 -4.4169 2.5096 29 1 5.1907 -5.8076 2.7735 30 1 0.8942 -8.7529 3.6359 31 1 2.3893 -9.0473 4.3433 32 1 3.0365 -3.4404 0.8294 33 1 2.6068 -4.0031 -0.8149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591973702.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:47 Heat of formation + Delta-G solvation = -9.082826 kcal Electronic energy + Delta-G solvation = -20582.969174 eV Core-core repulsion = 17283.099257 eV Total energy + Delta-G solvation = -3299.869917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.24800 -40.12752 -37.68992 -37.18593 -35.99174 -34.17639 -33.38739 -31.69311 -30.36257 -29.85809 -26.79964 -25.23369 -24.19125 -22.18890 -21.51911 -19.44224 -19.27379 -18.57086 -17.26830 -17.16626 -16.90429 -16.85375 -16.33343 -15.87684 -15.69299 -15.42085 -14.46074 -14.42849 -13.94778 -13.62873 -13.36786 -13.06282 -13.02389 -12.81895 -12.71178 -12.36143 -12.26986 -12.15029 -12.01735 -11.86885 -11.16916 -11.03139 -10.60460 -10.24720 -10.11927 -9.66940 -9.21264 -8.20854 -6.35637 -0.14152 0.24285 1.09394 1.44256 1.45381 1.52808 2.18227 2.39507 2.50154 2.78875 3.04321 3.22371 3.53246 3.81312 3.89759 4.07663 4.11763 4.21696 4.34235 4.68560 4.74673 4.98548 5.11781 5.21336 5.32157 5.46718 5.51783 5.74954 5.81471 6.00088 6.09593 6.17365 6.67535 6.68541 7.22631 7.34934 7.44510 8.84865 Molecular weight = 284.08amu Principal moments of inertia in cm(-1) A = 0.028257 B = 0.005171 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.680505 B = 5413.065326 C = 6020.436494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.035 3.965 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.560 4.560 8 H 0.055 0.945 9 C 0.238 3.762 10 O -0.588 6.588 11 C -0.134 4.134 12 C 0.071 3.929 13 N -0.466 5.466 14 C 0.379 3.621 15 N -0.603 5.603 16 C 0.363 3.637 17 N -0.592 5.592 18 C 0.464 3.536 19 N -0.810 5.810 20 C -0.245 4.245 21 Cl -0.038 7.038 22 C 0.073 3.927 23 H 0.270 0.730 24 H 0.374 0.626 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.235 0.765 30 H 0.420 0.580 31 H 0.422 0.578 32 H 0.087 0.913 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.814 -14.020 8.693 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.166 4.166 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.598 4.598 8 H 0.073 0.927 9 C 0.197 3.803 10 O -0.395 6.395 11 C -0.173 4.173 12 C -0.053 4.053 13 N -0.182 5.182 14 C 0.141 3.859 15 N -0.329 5.329 16 C 0.073 3.927 17 N -0.320 5.320 18 C 0.217 3.783 19 N -0.356 5.356 20 C -0.286 4.286 21 Cl -0.010 7.010 22 C -0.053 4.053 23 H 0.079 0.921 24 H 0.223 0.777 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.251 0.749 30 H 0.253 0.747 31 H 0.255 0.745 32 H 0.105 0.895 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.531 -14.526 8.270 16.906 hybrid contribution -0.940 1.367 0.355 1.697 sum 1.591 -13.159 8.624 15.814 Atomic orbital electron populations 1.69792 1.06732 1.28272 1.50030 1.25632 0.95816 1.02071 0.93128 0.85607 0.78476 0.78801 0.78698 1.20013 1.20547 1.19776 1.21691 0.93567 0.91752 1.52766 0.92653 1.19746 0.87269 0.91284 0.81958 1.86147 1.51435 1.56579 1.45368 1.23115 1.01836 0.92705 0.99687 1.22819 0.92316 0.94139 0.96076 1.60347 1.09395 1.21787 1.26629 1.20117 0.89566 0.90982 0.85198 1.68533 1.06411 1.33725 1.24204 1.25288 1.00678 0.82996 0.83700 1.68213 1.10314 1.22402 1.31118 1.18190 0.87855 0.86467 0.85819 1.42175 1.15474 1.28208 1.49697 1.21339 0.89877 1.04599 1.12774 1.98316 1.13210 1.93182 1.96305 1.22928 0.95315 0.88232 0.98783 0.92110 0.77686 0.90990 0.93338 0.89629 0.92076 0.74912 0.74675 0.74534 0.89490 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.87 10.75 21.45 0.23 -47.64 16 2 C 0.03 1.81 5.29 84.66 0.45 2.26 16 3 Si 0.96 41.92 29.54 68.60 2.03 43.94 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.56 -30.12 8.27 25.60 0.21 -29.91 16 8 H 0.06 2.99 7.79 -2.91 -0.02 2.96 16 9 C 0.24 11.90 0.87 -10.16 -0.01 11.89 16 10 O -0.59 -30.88 13.16 -148.98 -1.96 -32.84 16 11 C -0.13 -6.17 5.37 31.78 0.17 -6.00 16 12 C 0.07 2.79 5.11 86.65 0.44 3.23 16 13 N -0.47 -18.86 4.99 -691.30 -3.45 -22.30 16 14 C 0.38 13.67 6.15 132.95 0.82 14.49 16 15 N -0.60 -20.70 8.32 -197.73 -1.65 -22.34 16 16 C 0.36 9.71 12.28 180.91 2.22 11.94 16 17 N -0.59 -15.29 10.47 -197.71 -2.07 -17.36 16 18 C 0.46 11.79 7.82 132.97 1.04 12.83 16 19 N -0.81 -13.36 9.03 -55.14 -0.50 -13.86 16 20 C -0.25 -7.40 5.91 22.74 0.13 -7.27 16 21 Cl -0.04 -1.02 25.25 -2.72 -0.07 -1.09 16 22 C 0.07 3.34 5.56 86.77 0.48 3.83 16 23 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 24 H 0.37 19.75 7.56 -74.06 -0.56 19.19 16 25 H 0.07 3.46 7.54 -2.39 -0.02 3.45 16 26 H 0.05 2.30 8.04 -2.39 -0.02 2.28 16 27 H 0.09 3.24 7.89 -2.39 -0.02 3.22 16 28 H 0.06 2.21 6.87 -2.39 -0.02 2.19 16 29 H 0.23 4.22 8.06 -2.91 -0.02 4.20 16 30 H 0.42 5.81 7.61 -92.71 -0.71 5.11 16 31 H 0.42 4.98 8.95 -92.71 -0.83 4.15 16 32 H 0.09 3.98 6.47 -2.39 -0.02 3.96 16 33 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -60.85 288.67 -2.37 -63.22 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -0.90 Total: 32.99 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 5.96 Total: 17.28 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -7.43 Total: -123.50 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.96 Total: -32.84 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.07 Total: -1.09 kcal Total: -60.85 -2.37 -63.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973702.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.137 kcal (2) G-P(sol) polarization free energy of solvation -60.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds