Wall clock time and date at job start Wed Apr 15 2020 11:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00247 * 2 1 4 4 H 1.48498 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46710 * 299.99995 * 3 2 1 6 6 H 1.48497 * 109.46876 * 59.99605 * 3 2 1 7 7 C 1.37884 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99868 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.28528 * 299.32318 * 9 7 2 11 11 C 1.54257 * 110.32879 * 61.44756 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.94622 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.38706 * 111.01664 * 158.96512 * 13 12 11 15 15 N 1.33191 * 120.48957 * 244.21251 * 14 13 12 16 16 C 1.31729 * 120.88536 * 179.75795 * 15 14 13 17 17 N 1.31764 * 121.92991 * 0.53355 * 16 15 14 18 18 C 1.33155 * 120.88521 * 359.73249 * 17 16 15 19 19 N 1.38705 * 120.48874 * 179.97438 * 18 17 16 20 20 C 1.39197 * 120.49250 * 64.48931 * 14 13 12 21 21 Cl 1.73604 * 120.86662 * 359.97438 * 20 14 13 22 22 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 23 23 H 0.97005 * 119.99855 * 359.97438 * 1 2 3 24 24 H 0.96699 * 114.00154 * 60.67426 * 10 9 7 25 25 H 1.09002 * 110.32715 * 237.89677 * 11 9 7 26 26 H 1.08998 * 110.32251 * 0.02562 * 11 9 7 27 27 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 28 28 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 29 29 H 1.07998 * 119.03364 * 180.28711 * 16 15 14 30 30 H 0.96991 * 119.99988 * 180.02562 * 19 18 17 31 31 H 0.97003 * 119.99392 * 0.02562 * 19 18 17 32 32 H 1.08999 * 110.41133 * 201.79165 * 22 13 12 33 33 H 1.09004 * 110.50861 * 79.40616 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4343 -2.5997 1.1690 11 6 0.3848 -2.6178 -1.2703 12 6 0.9159 -3.8672 -2.0054 13 7 2.3118 -4.0222 -1.5164 14 6 2.7629 -5.3205 -1.7026 15 7 3.0662 -6.0871 -0.6565 16 6 3.4908 -7.3228 -0.8241 17 7 3.6441 -7.8505 -2.0217 18 6 3.3675 -7.1482 -3.1186 19 7 3.5323 -7.7118 -4.3753 20 6 2.9109 -5.8397 -2.9856 21 17 2.5357 -4.8807 -4.3832 22 6 2.2333 -3.6880 -0.0709 23 1 -0.4850 0.8401 0.0004 24 1 -0.2326 -1.9035 1.2438 25 1 -0.6633 -2.7528 -1.0030 26 1 0.5050 -1.7323 -1.8944 27 1 0.3224 -4.7432 -1.7435 28 1 0.9044 -3.7076 -3.0835 29 1 3.7237 -7.9195 0.0454 30 1 3.3291 -7.1937 -5.1696 31 1 3.8509 -8.6241 -4.4596 32 1 3.2133 -3.3946 0.3052 33 1 1.8472 -4.5349 0.4964 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591973727.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:49 Heat of formation + Delta-G solvation = 12.253673 kcal Electronic energy + Delta-G solvation = -20549.114694 eV Core-core repulsion = 17250.169997 eV Total energy + Delta-G solvation = -3298.944697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.99596 -38.53006 -36.56630 -35.76420 -34.69987 -32.18337 -32.06733 -30.41549 -28.77003 -27.97588 -24.92818 -24.02498 -22.83455 -20.84406 -19.64693 -18.13729 -17.84253 -17.05329 -16.09191 -15.91723 -15.34116 -15.16558 -14.83393 -14.47844 -14.17386 -13.83962 -13.22384 -12.48048 -12.34952 -12.05205 -11.82810 -11.70036 -11.30148 -11.14341 -11.06727 -10.96485 -10.70188 -10.42419 -10.36603 -10.06882 -9.74759 -9.13115 -9.01712 -8.59297 -8.50945 -8.16321 -8.01281 -6.18368 -4.24036 1.01823 1.39120 2.24793 3.15875 3.25052 3.33690 3.39389 3.74536 3.97232 4.29292 4.35700 4.76778 5.02189 5.13243 5.19616 5.56993 5.73438 5.94136 6.04262 6.12569 6.27582 6.59875 6.61100 6.79183 6.86158 6.99212 7.08108 7.33102 7.47606 7.55860 7.61340 7.82961 8.18035 8.32915 8.79081 9.40571 9.50049 10.89171 Molecular weight = 284.08amu Principal moments of inertia in cm(-1) A = 0.026323 B = 0.005247 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.434599 B = 5335.253078 C = 5753.727171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.247 3.753 10 O -0.590 6.590 11 C -0.122 4.122 12 C 0.043 3.957 13 N -0.438 5.438 14 C 0.398 3.602 15 N -0.575 5.575 16 C 0.360 3.640 17 N -0.593 5.593 18 C 0.461 3.539 19 N -0.834 5.834 20 C -0.232 4.232 21 Cl -0.045 7.045 22 C 0.064 3.936 23 H 0.266 0.734 24 H 0.383 0.617 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.200 0.800 30 H 0.412 0.588 31 H 0.408 0.592 32 H 0.083 0.917 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 -12.749 -8.012 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.399 6.399 11 C -0.161 4.161 12 C -0.081 4.081 13 N -0.154 5.154 14 C 0.159 3.841 15 N -0.299 5.299 16 C 0.069 3.931 17 N -0.322 5.322 18 C 0.216 3.784 19 N -0.378 5.378 20 C -0.272 4.272 21 Cl -0.017 7.017 22 C -0.062 4.062 23 H 0.076 0.924 24 H 0.234 0.766 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.216 0.784 30 H 0.243 0.757 31 H 0.239 0.761 32 H 0.102 0.898 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.090 -13.107 -7.531 15.660 hybrid contribution -0.385 1.383 -1.067 1.789 sum 3.705 -11.724 -8.598 15.003 Atomic orbital electron populations 1.69696 1.05891 1.27288 1.51144 1.24997 0.94983 0.99421 0.94018 0.86413 0.80257 0.83065 0.77538 1.19660 1.20982 1.20936 1.21679 0.93650 0.90248 1.50254 0.91839 1.19292 0.86467 0.91576 0.81962 1.86102 1.52044 1.55730 1.46034 1.22957 0.98842 0.94877 0.99409 1.23387 0.83881 0.99655 1.01217 1.62090 1.21995 1.12661 1.18696 1.20147 0.88407 0.88647 0.86895 1.68678 1.21502 1.06995 1.32759 1.24585 0.86786 0.88455 0.93240 1.68080 1.27687 1.38231 0.98157 1.18015 0.86556 0.86436 0.87382 1.42191 1.73621 1.18424 1.03601 1.21308 1.21532 0.94455 0.89919 1.98318 1.93217 1.70995 1.39196 1.22976 1.01309 0.98273 0.83594 0.92450 0.76630 0.92156 0.90022 0.94013 0.89664 0.78368 0.75650 0.76150 0.89845 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.71 10.81 55.43 0.60 -23.11 16 2 C 0.07 1.77 5.02 -17.82 -0.09 1.68 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -13.93 8.10 -34.44 -0.28 -14.20 16 8 H 0.06 1.73 7.54 -52.49 -0.40 1.34 16 9 C 0.25 6.10 1.05 -90.39 -0.10 6.01 16 10 O -0.59 -15.19 12.94 -35.23 -0.46 -15.65 16 11 C -0.12 -2.77 5.54 -25.35 -0.14 -2.91 16 12 C 0.04 0.84 5.70 -2.09 -0.01 0.83 16 13 N -0.44 -8.92 5.13 -168.50 -0.86 -9.79 16 14 C 0.40 7.28 6.16 -154.61 -0.95 6.33 16 15 N -0.57 -9.99 8.58 -13.85 -0.12 -10.10 16 16 C 0.36 5.08 12.28 -92.24 -1.13 3.95 16 17 N -0.59 -8.28 10.47 -13.85 -0.14 -8.42 16 18 C 0.46 6.34 7.82 -154.63 -1.21 5.14 16 19 N -0.83 -8.03 9.03 31.22 0.28 -7.74 16 20 C -0.23 -3.67 6.22 -38.86 -0.24 -3.91 16 21 Cl -0.05 -0.65 24.93 -51.86 -1.29 -1.94 16 22 C 0.06 1.44 5.21 -2.18 -0.01 1.43 16 23 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 24 H 0.38 9.91 7.32 45.56 0.33 10.24 16 25 H 0.06 1.36 7.98 -51.93 -0.41 0.95 16 26 H 0.08 2.01 7.24 -51.93 -0.38 1.63 16 27 H 0.04 0.79 7.97 -51.93 -0.41 0.37 16 28 H 0.09 1.54 6.13 -51.93 -0.32 1.22 16 29 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.41 3.43 7.61 -40.82 -0.31 3.12 16 31 H 0.41 3.04 8.95 -40.82 -0.37 2.68 16 32 H 0.08 1.93 7.68 -51.93 -0.40 1.53 16 33 H 0.07 1.47 7.12 -51.93 -0.37 1.10 16 LS Contribution 287.77 15.07 4.34 4.34 Total: -1.00 -28.92 287.77 -9.43 -38.35 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -2.59 Total: 13.94 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -4.16 Total: 4.33 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.25 Total: -59.17 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.46 Total: -15.65 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.29 Total: -1.94 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.92 -9.43 -38.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973727.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.607 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds