Wall clock time and date at job start Wed Apr 15 2020 11:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00247 * 2 1 4 4 H 1.48498 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46710 * 299.99995 * 3 2 1 6 6 H 1.48497 * 109.46876 * 59.99605 * 3 2 1 7 7 C 1.37884 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00057 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99868 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.28528 * 299.32318 * 9 7 2 11 11 C 1.54257 * 110.32879 * 61.44756 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.94622 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.38706 * 111.01664 * 158.96512 * 13 12 11 15 15 N 1.33191 * 120.48957 * 244.21251 * 14 13 12 16 16 C 1.31729 * 120.88536 * 179.75795 * 15 14 13 17 17 N 1.31764 * 121.92991 * 0.53355 * 16 15 14 18 18 C 1.33155 * 120.88521 * 359.73249 * 17 16 15 19 19 N 1.38705 * 120.48874 * 179.97438 * 18 17 16 20 20 C 1.39197 * 120.49250 * 64.48931 * 14 13 12 21 21 Cl 1.73604 * 120.86662 * 359.97438 * 20 14 13 22 22 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 23 23 H 0.97005 * 119.99855 * 359.97438 * 1 2 3 24 24 H 0.96699 * 114.00154 * 60.67426 * 10 9 7 25 25 H 1.09002 * 110.32715 * 237.89677 * 11 9 7 26 26 H 1.08998 * 110.32251 * 0.02562 * 11 9 7 27 27 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 28 28 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 29 29 H 1.07998 * 119.03364 * 180.28711 * 16 15 14 30 30 H 0.96991 * 119.99988 * 180.02562 * 19 18 17 31 31 H 0.97003 * 119.99392 * 0.02562 * 19 18 17 32 32 H 1.08999 * 110.41133 * 201.79165 * 22 13 12 33 33 H 1.09004 * 110.50861 * 79.40616 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4343 -2.5997 1.1690 11 6 0.3848 -2.6178 -1.2703 12 6 0.9159 -3.8672 -2.0054 13 7 2.3118 -4.0222 -1.5164 14 6 2.7629 -5.3205 -1.7026 15 7 3.0662 -6.0871 -0.6565 16 6 3.4908 -7.3228 -0.8241 17 7 3.6441 -7.8505 -2.0217 18 6 3.3675 -7.1482 -3.1186 19 7 3.5323 -7.7118 -4.3753 20 6 2.9109 -5.8397 -2.9856 21 17 2.5357 -4.8807 -4.3832 22 6 2.2333 -3.6880 -0.0709 23 1 -0.4850 0.8401 0.0004 24 1 -0.2326 -1.9035 1.2438 25 1 -0.6633 -2.7528 -1.0030 26 1 0.5050 -1.7323 -1.8944 27 1 0.3224 -4.7432 -1.7435 28 1 0.9044 -3.7076 -3.0835 29 1 3.7237 -7.9195 0.0454 30 1 3.3291 -7.1937 -5.1696 31 1 3.8509 -8.6241 -4.4596 32 1 3.2133 -3.3946 0.3052 33 1 1.8472 -4.5349 0.4964 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591973727.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:49 Heat of formation + Delta-G solvation = -8.705052 kcal Electronic energy + Delta-G solvation = -20550.023532 eV Core-core repulsion = 17250.169997 eV Total energy + Delta-G solvation = -3299.853535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.22811 -40.11939 -37.71990 -37.28336 -36.04896 -34.15838 -33.48616 -31.66334 -30.33601 -29.71205 -26.78481 -25.21451 -24.23820 -22.37773 -21.41518 -19.33430 -19.16526 -18.96826 -17.30817 -17.12979 -16.86312 -16.65054 -16.37590 -15.93114 -15.66693 -15.35716 -14.78506 -14.27252 -14.12105 -13.57373 -13.26404 -13.21221 -13.04983 -12.84142 -12.52199 -12.48294 -12.23399 -12.17703 -12.03364 -11.92062 -11.10892 -10.93246 -10.59641 -10.27004 -10.14395 -9.77544 -9.26984 -8.19257 -6.31848 -0.17716 0.21345 1.07030 1.40721 1.44472 1.55147 2.15967 2.41859 2.45316 2.74526 3.06006 3.20512 3.51963 3.81181 3.88668 4.05293 4.14875 4.24751 4.32689 4.60542 4.74805 4.96283 5.05613 5.11434 5.21873 5.48202 5.60888 5.75190 5.78167 5.97800 6.09830 6.19638 6.65625 6.72106 7.20161 7.36315 7.45320 8.86967 Molecular weight = 284.08amu Principal moments of inertia in cm(-1) A = 0.026323 B = 0.005247 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.434599 B = 5335.253078 C = 5753.727171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.031 3.969 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.049 0.951 9 C 0.233 3.767 10 O -0.598 6.598 11 C -0.112 4.112 12 C 0.055 3.945 13 N -0.448 5.448 14 C 0.373 3.627 15 N -0.602 5.602 16 C 0.362 3.638 17 N -0.590 5.590 18 C 0.464 3.536 19 N -0.810 5.810 20 C -0.239 4.239 21 Cl -0.036 7.036 22 C 0.080 3.920 23 H 0.269 0.731 24 H 0.379 0.621 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.101 0.899 29 H 0.236 0.764 30 H 0.420 0.580 31 H 0.422 0.578 32 H 0.067 0.933 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -13.992 -9.192 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.169 4.169 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.406 6.406 11 C -0.151 4.151 12 C -0.070 4.070 13 N -0.165 5.165 14 C 0.136 3.864 15 N -0.327 5.327 16 C 0.072 3.928 17 N -0.318 5.318 18 C 0.217 3.783 19 N -0.355 5.355 20 C -0.280 4.280 21 Cl -0.008 7.008 22 C -0.047 4.047 23 H 0.079 0.921 24 H 0.229 0.771 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.119 0.881 29 H 0.252 0.748 30 H 0.254 0.746 31 H 0.255 0.745 32 H 0.086 0.914 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.741 -14.398 -8.756 17.505 hybrid contribution -0.554 1.645 -0.755 1.893 sum 4.186 -12.752 -9.511 16.450 Atomic orbital electron populations 1.69759 1.06575 1.28050 1.50788 1.25598 0.95804 1.01909 0.93568 0.85540 0.78829 0.79694 0.77717 1.20061 1.20343 1.20415 1.21823 0.93171 0.91769 1.51402 0.93304 1.19492 0.87025 0.91919 0.82247 1.86094 1.52072 1.55499 1.46965 1.22705 0.98373 0.95561 0.98462 1.23253 0.83979 0.98195 1.01550 1.62093 1.22366 1.15081 1.16959 1.20161 0.89691 0.88251 0.88274 1.68641 1.22742 1.08334 1.33015 1.25311 0.85338 0.87605 0.94511 1.68220 1.27517 1.37832 0.98195 1.18181 0.85721 0.85837 0.88604 1.42184 1.71809 1.19044 1.02458 1.21341 1.21882 0.95322 0.89432 1.98316 1.93166 1.70983 1.38351 1.22643 0.99597 0.97047 0.85379 0.92141 0.77118 0.92624 0.92296 0.93292 0.88121 0.74814 0.74649 0.74480 0.91425 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.39 10.81 21.45 0.23 -48.16 16 2 C 0.03 1.66 5.02 84.66 0.43 2.09 16 3 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.54 -29.74 8.10 25.60 0.21 -29.54 16 8 H 0.05 2.75 7.54 -2.91 -0.02 2.72 16 9 C 0.23 11.77 1.05 -10.65 -0.01 11.75 16 10 O -0.60 -31.49 12.94 -148.98 -1.93 -33.42 16 11 C -0.11 -5.18 5.54 31.49 0.17 -5.00 16 12 C 0.05 2.13 5.70 86.42 0.49 2.63 16 13 N -0.45 -18.26 5.13 -687.00 -3.52 -21.78 16 14 C 0.37 13.38 6.16 132.94 0.82 14.20 16 15 N -0.60 -20.35 8.58 -197.72 -1.70 -22.05 16 16 C 0.36 9.44 12.28 180.91 2.22 11.66 16 17 N -0.59 -14.86 10.47 -197.73 -2.07 -16.93 16 18 C 0.46 11.58 7.82 132.96 1.04 12.62 16 19 N -0.81 -13.02 9.03 -55.15 -0.50 -13.52 16 20 C -0.24 -7.17 6.22 22.74 0.14 -7.03 16 21 Cl -0.04 -0.98 24.93 -2.72 -0.07 -1.05 16 22 C 0.08 3.67 5.21 86.45 0.45 4.12 16 23 H 0.27 13.57 8.31 -92.70 -0.77 12.80 16 24 H 0.38 20.11 7.32 -74.06 -0.54 19.57 16 25 H 0.06 2.55 7.98 -2.39 -0.02 2.54 16 26 H 0.06 2.95 7.24 -2.39 -0.02 2.93 16 27 H 0.05 1.81 7.97 -2.38 -0.02 1.79 16 28 H 0.10 3.56 6.13 -2.39 -0.01 3.55 16 29 H 0.24 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.42 5.69 7.61 -92.72 -0.71 4.99 16 31 H 0.42 4.79 8.95 -92.71 -0.83 3.96 16 32 H 0.07 3.24 7.68 -2.39 -0.02 3.22 16 33 H 0.06 2.79 7.12 -2.39 -0.02 2.77 16 Total: -1.00 -61.87 287.77 -2.44 -64.31 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.88 Total: 30.20 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 5.96 Total: 17.50 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -7.55 Total: -122.44 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.93 Total: -33.42 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.07 Total: -1.05 kcal Total: -61.87 -2.44 -64.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973727.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.604 kcal (2) G-P(sol) polarization free energy of solvation -61.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds