Wall clock time and date at job start Wed Apr 15 2020 11:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35279 * 126.71036 * 2 1 4 4 C 1.41920 * 103.96089 * 180.02562 * 3 2 1 5 5 O 1.35712 * 126.88073 * 180.26335 * 4 3 2 6 6 C 1.42903 * 117.00334 * 175.96809 * 5 4 3 7 7 C 1.50701 * 109.47115 * 183.81046 * 6 5 4 8 8 O 1.21290 * 119.99799 * 5.59594 * 7 6 5 9 9 N 1.34772 * 119.99586 * 185.60354 * 7 6 5 10 10 C 1.37098 * 120.00253 * 354.70358 * 9 7 6 11 11 H 1.07993 * 120.00013 * 323.57319 * 10 9 7 12 12 C 1.38951 * 119.99828 * 143.57689 * 10 9 7 13 13 N 1.31407 * 120.00277 * 159.68128 * 12 10 9 14 14 Si 1.86808 * 119.99836 * 339.67333 * 12 10 9 15 15 H 1.48501 * 109.46983 * 95.38790 * 14 12 10 16 16 H 1.48503 * 109.46954 * 215.38598 * 14 12 10 17 17 H 1.48498 * 109.47309 * 335.39033 * 14 12 10 18 18 C 1.46506 * 119.99674 * 174.70985 * 9 7 6 19 19 C 1.50697 * 109.47313 * 89.99687 * 18 9 7 20 20 O 1.20825 * 119.99982 * 0.02562 * 19 18 9 21 21 O 1.34229 * 120.00252 * 180.02562 * 19 18 9 22 22 N 1.30625 * 106.24419 * 0.02562 * 4 3 2 23 23 O 1.20911 * 111.49368 * 0.02562 * 22 4 3 24 24 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46899 * 299.94960 * 1 2 3 26 26 H 1.09006 * 109.46924 * 59.94600 * 1 2 3 27 27 H 1.07997 * 128.01697 * 0.05249 * 3 2 1 28 28 H 1.08997 * 109.46717 * 303.80767 * 6 5 4 29 29 H 1.08995 * 109.47069 * 63.80888 * 6 5 4 30 30 H 0.96997 * 120.00252 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.47171 * 209.99765 * 18 9 7 32 32 H 1.09002 * 109.46947 * 329.99622 * 18 9 7 33 33 H 0.96696 * 117.00216 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3157 1.0845 0.0000 4 6 3.6244 0.5357 -0.0006 5 8 4.7953 1.2218 0.0041 6 6 5.9971 0.4536 0.0919 7 6 7.1814 1.3817 0.1782 8 8 7.0083 2.5788 0.2681 9 7 8.4326 0.8814 0.1552 10 6 8.6286 -0.4755 0.1631 11 1 7.9733 -1.1124 0.7386 12 6 9.6704 -1.0312 -0.5695 13 7 10.1164 -2.2308 -0.2715 14 14 10.4368 -0.0729 -1.9780 15 1 11.6431 0.6431 -1.4910 16 1 10.8222 -1.0109 -3.0629 17 1 9.4543 0.9108 -2.4999 18 6 9.5833 1.7876 0.1221 19 6 10.0088 2.1109 1.5310 20 8 9.4125 1.6331 2.4670 21 8 11.0504 2.9298 1.7464 22 7 3.4765 -0.7622 -0.0015 23 8 2.3085 -1.0749 -0.0020 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5131 0.8904 26 1 -0.3633 0.5147 -0.8896 27 1 2.0312 2.1263 0.0008 28 1 5.9624 -0.1748 0.9818 29 1 6.0920 -0.1751 -0.7934 30 1 10.8439 -2.6185 -0.7827 31 1 10.4079 1.3085 -0.4057 32 1 9.3069 2.7070 -0.3941 33 1 11.2858 3.1079 2.6672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738465716.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:50 Heat of formation + Delta-G solvation = -100.146687 kcal Electronic energy + Delta-G solvation = -22271.008881 eV Core-core repulsion = 18494.188223 eV Total energy + Delta-G solvation = -3776.820658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.96019 -41.75211 -40.71822 -39.49195 -37.30643 -36.82446 -34.76661 -34.17465 -33.56351 -31.26487 -29.01363 -28.36077 -26.88884 -24.47971 -23.48035 -22.24341 -21.22155 -19.43034 -19.34394 -19.02009 -18.92942 -18.22125 -17.91272 -17.51378 -17.09976 -16.89502 -16.66431 -16.17603 -15.38653 -15.05048 -14.88015 -14.65854 -14.32622 -14.25074 -13.99530 -13.88229 -13.61344 -13.20343 -12.97452 -12.80170 -12.67457 -12.45539 -12.07544 -12.00489 -11.80440 -11.30220 -10.82660 -10.47840 -10.25586 -10.14005 -8.64963 -6.35579 0.48426 1.08411 1.12073 1.17986 1.24436 1.29205 1.40154 1.45392 2.02707 2.07792 2.28527 2.59137 2.83259 3.16880 3.67253 3.81861 3.85298 3.99802 4.01869 4.07270 4.16184 4.30955 4.41314 4.80735 4.82442 4.92604 5.05631 5.29687 5.52130 5.78613 5.88682 5.99058 6.69632 6.92043 7.03785 7.28750 7.36764 8.48849 Molecular weight = 284.09amu Principal moments of inertia in cm(-1) A = 0.020963 B = 0.004677 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.341793 B = 5985.336330 C = 6738.954118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.005 3.995 3 C -0.246 4.246 4 C 0.180 3.820 5 O -0.281 6.281 6 C 0.083 3.917 7 C 0.489 3.511 8 O -0.592 6.592 9 N -0.446 5.446 10 C -0.362 4.362 11 H 0.077 0.923 12 C 0.031 3.969 13 N -0.883 5.883 14 Si 0.920 3.080 15 H -0.240 1.240 16 H -0.272 1.272 17 H -0.250 1.250 18 C 0.099 3.901 19 C 0.472 3.528 20 O -0.537 6.537 21 O -0.505 6.505 22 N -0.439 5.439 23 O 0.096 5.904 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.201 0.799 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.287 0.713 31 H 0.115 0.885 32 H 0.135 0.865 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.745 5.986 -2.301 13.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.059 4.059 3 C -0.268 4.268 4 C -0.016 4.016 5 O -0.187 6.187 6 C 0.005 3.995 7 C 0.279 3.721 8 O -0.476 6.476 9 N -0.168 5.168 10 C -0.489 4.489 11 H 0.095 0.905 12 C -0.176 4.176 13 N -0.518 5.518 14 Si 0.742 3.258 15 H -0.165 1.165 16 H -0.198 1.198 17 H -0.173 1.173 18 C -0.025 4.025 19 C 0.313 3.687 20 O -0.426 6.426 21 O -0.318 6.318 22 N -0.166 5.166 23 O 0.035 5.965 24 H 0.118 0.882 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.218 0.782 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.153 0.847 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -11.026 5.474 -2.429 12.547 hybrid contribution 0.874 0.455 0.409 1.067 sum -10.152 5.929 -2.021 11.929 Atomic orbital electron populations 1.20683 0.79304 1.06460 1.06248 1.25293 0.98286 0.84035 0.98237 1.22157 0.86612 1.03355 1.14642 1.22675 0.89066 0.88650 1.01248 1.86159 1.11040 1.32446 1.89060 1.22029 0.80858 0.92396 1.04253 1.20025 0.84492 0.87953 0.79661 1.90567 1.85963 1.16414 1.54656 1.43218 1.02325 1.06168 1.65112 1.18931 1.19010 0.79782 1.31173 0.90549 1.26028 0.96215 0.96711 0.98625 1.69811 1.25335 1.18026 1.38595 0.86227 0.80196 0.79697 0.79631 1.16534 1.19767 1.17336 1.21523 0.91535 0.97894 0.91553 1.24087 0.76993 0.74528 0.93072 1.90673 1.54994 1.51039 1.45902 1.84469 1.47172 1.61632 1.38549 1.74245 0.99069 1.14894 1.28364 1.84754 1.09947 1.33126 1.68692 0.88236 0.86852 0.86700 0.78212 0.90043 0.88343 0.90269 0.86803 0.84745 0.71166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.45 71.24 0.74 0.18 16 2 C 0.01 0.11 7.48 25.00 0.19 0.30 16 3 C -0.25 -6.47 11.10 22.50 0.25 -6.22 16 4 C 0.18 6.70 8.00 85.78 0.69 7.39 16 5 O -0.28 -12.26 9.74 -71.35 -0.70 -12.96 16 6 C 0.08 3.78 4.85 71.24 0.35 4.13 16 7 C 0.49 24.39 7.69 87.66 0.67 25.07 16 8 O -0.59 -31.09 16.14 15.92 0.26 -30.83 16 9 N -0.45 -22.05 1.70 -639.60 -1.08 -23.13 16 10 C -0.36 -19.37 9.02 84.04 0.76 -18.61 16 11 H 0.08 4.49 7.37 -2.91 -0.02 4.47 16 12 C 0.03 1.59 5.35 84.93 0.45 2.04 16 13 N -0.88 -48.15 13.96 21.66 0.30 -47.85 16 14 Si 0.92 37.77 24.84 68.60 1.70 39.47 16 15 H -0.24 -8.82 6.70 99.48 0.67 -8.16 16 16 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 17 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 18 C 0.10 4.24 4.75 85.63 0.41 4.65 16 19 C 0.47 19.76 8.40 71.23 0.60 20.36 16 20 O -0.54 -26.71 17.19 21.97 0.38 -26.33 16 21 O -0.50 -15.45 13.42 -51.41 -0.69 -16.14 16 22 N -0.44 -16.29 11.54 -172.60 -1.99 -18.28 16 23 O 0.10 2.81 11.19 71.27 0.80 3.61 16 24 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.20 4.03 8.06 -2.91 -0.02 4.01 16 28 H 0.08 3.81 7.80 -2.39 -0.02 3.80 16 29 H 0.10 4.42 8.02 -2.39 -0.02 4.40 16 30 H 0.29 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.11 4.65 2.96 -2.39 -0.01 4.64 16 32 H 0.13 5.19 7.50 -2.39 -0.02 5.18 16 33 H 0.43 8.72 9.10 -74.06 -0.67 8.04 16 Total: -1.00 -75.82 301.28 4.55 -71.27 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.47 Total: 21.91 kcal Atomic # 6 Polarization: 34.17 SS G_CDS: 5.10 Total: 39.27 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -2.77 Total: -89.27 kcal Atomic # 8 Polarization: -82.71 SS G_CDS: 0.05 Total: -82.66 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 1.70 Total: 39.47 kcal Total: -75.82 4.55 -71.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738465716.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.881 kcal (2) G-P(sol) polarization free energy of solvation -75.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds