Wall clock time and date at job start Wed Apr 15 2020 11:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35282 * 126.70590 * 2 1 4 4 C 1.41923 * 103.95813 * 180.02562 * 3 2 1 5 5 O 1.35706 * 126.88027 * 180.26245 * 4 3 2 6 6 C 1.42901 * 117.00447 * 179.71253 * 5 4 3 7 7 C 1.50703 * 109.47311 * 180.02562 * 6 5 4 8 8 O 1.20825 * 119.99577 * 359.97438 * 7 6 5 9 9 O 1.34222 * 120.00135 * 179.97438 * 7 6 5 10 10 C 1.45203 * 117.00048 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.46937 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00096 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99674 * 180.02562 * 11 10 9 14 14 C 1.37095 * 119.99939 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99935 * 0.02562 * 14 13 11 16 16 C 1.38948 * 120.00436 * 179.97438 * 14 13 11 17 17 N 1.31409 * 120.00267 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99497 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47478 * 89.99734 * 18 16 14 20 20 H 1.48506 * 109.46975 * 209.99502 * 18 16 14 21 21 H 1.48494 * 109.47347 * 329.99409 * 18 16 14 22 22 N 1.30624 * 106.24445 * 0.02562 * 4 3 2 23 23 O 1.20905 * 111.49643 * 359.97438 * 22 4 3 24 24 H 1.09002 * 109.46727 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47372 * 299.95101 * 1 2 3 26 26 H 1.08998 * 109.47308 * 59.95142 * 1 2 3 27 27 H 1.07996 * 128.01544 * 0.04302 * 3 2 1 28 28 H 1.09005 * 109.46855 * 299.99920 * 6 5 4 29 29 H 1.08992 * 109.47170 * 59.99843 * 6 5 4 30 30 H 1.09003 * 109.46883 * 299.99909 * 10 9 7 31 31 H 1.08998 * 109.46605 * 60.00370 * 10 9 7 32 32 H 0.97001 * 120.00159 * 359.97438 * 13 11 10 33 33 H 0.97003 * 119.99424 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0846 0.0000 4 6 3.6244 0.5358 -0.0006 5 8 4.7952 1.2219 0.0041 6 6 5.9988 0.4515 0.0087 7 6 7.1879 1.3773 0.0142 8 8 7.0217 2.5741 0.0137 9 8 8.4315 0.8724 0.0197 10 6 9.5290 1.8232 0.0242 11 6 10.8390 1.0782 0.0294 12 8 10.8469 -0.1347 0.0297 13 7 12.0017 1.7597 0.0346 14 6 13.1934 1.0820 0.0398 15 1 13.2005 0.0020 0.0393 16 6 14.3922 1.7846 0.0447 17 7 15.5345 1.1350 0.0502 18 14 14.3799 3.6525 0.0449 19 1 14.3710 4.1475 1.4450 20 1 15.5921 4.1555 -0.6502 21 1 13.1672 4.1397 -0.6601 22 7 3.4765 -0.7620 -0.0015 23 8 2.3086 -1.0748 -0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5130 0.8904 26 1 -0.3634 0.5146 -0.8895 27 1 2.0310 2.1264 0.0006 28 1 6.0242 -0.1773 0.8988 29 1 6.0313 -0.1770 -0.8811 30 1 9.4709 2.4493 -0.8662 31 1 9.4633 2.4496 0.9138 32 1 11.9953 2.7297 0.0347 33 1 16.3713 1.6255 0.0540 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740947128.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:52 Heat of formation + Delta-G solvation = -78.137861 kcal Electronic energy + Delta-G solvation = -20865.416427 eV Core-core repulsion = 17089.550143 eV Total energy + Delta-G solvation = -3775.866284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.25693 -40.69325 -39.17161 -38.28251 -36.29547 -34.24020 -34.10224 -32.92728 -31.83785 -30.01385 -28.42179 -27.88056 -24.52065 -23.78146 -22.23355 -20.86001 -19.69739 -18.64999 -18.50680 -18.22631 -17.44019 -17.21958 -17.00585 -16.39026 -15.68313 -15.60358 -15.00417 -14.43408 -14.27891 -14.15449 -13.86529 -13.73992 -13.41709 -12.94368 -12.86710 -12.65972 -12.29351 -12.21065 -12.03059 -11.48259 -11.28920 -10.67846 -10.64885 -10.62400 -10.07381 -9.90840 -9.70731 -9.57398 -8.71889 -8.32329 -6.41602 -3.94777 1.03850 1.66808 1.89802 2.01213 2.68318 2.96949 3.00778 3.03042 3.11108 3.50975 3.79965 4.01541 4.21424 4.37286 4.54455 4.70176 4.75125 4.77897 4.83252 4.89192 5.08006 5.13260 5.25744 5.27455 5.47941 5.51430 5.62149 6.30381 6.54372 7.40852 7.60297 7.88364 7.97563 8.44521 8.80809 9.26784 9.61570 10.70507 Molecular weight = 284.09amu Principal moments of inertia in cm(-1) A = 0.060005 B = 0.002458 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.517424 B =11389.181712 C =11829.940795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.008 4.008 3 C -0.232 4.232 4 C 0.214 3.786 5 O -0.261 6.261 6 C 0.074 3.926 7 C 0.465 3.535 8 O -0.492 6.492 9 O -0.318 6.318 10 C 0.060 3.940 11 C 0.447 3.553 12 O -0.557 6.557 13 N -0.577 5.577 14 C -0.309 4.309 15 H 0.123 0.877 16 C 0.045 3.955 17 N -0.873 5.873 18 Si 0.879 3.121 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.268 1.268 22 N -0.407 5.407 23 O 0.102 5.898 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.180 0.820 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.373 0.627 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.811 2.529 -0.079 28.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.254 4.254 4 C 0.017 3.983 5 O -0.167 6.167 6 C -0.002 4.002 7 C 0.306 3.694 8 O -0.379 6.379 9 O -0.232 6.232 10 C -0.018 4.018 11 C 0.231 3.769 12 O -0.438 6.438 13 N -0.217 5.217 14 C -0.437 4.437 15 H 0.140 0.860 16 C -0.159 4.159 17 N -0.512 5.512 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.194 1.194 22 N -0.133 5.133 23 O 0.041 5.959 24 H 0.105 0.895 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.197 0.803 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.207 0.793 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.632 1.353 -0.078 27.666 hybrid contribution 0.158 2.365 -0.018 2.370 sum -27.474 3.718 -0.096 27.725 Atomic orbital electron populations 1.20397 0.83402 1.05041 1.04455 1.24376 0.96542 0.85518 1.00765 1.21781 0.88094 1.01810 1.13673 1.21947 0.87952 0.88072 1.00357 1.86181 1.10088 1.31063 1.89409 1.21853 0.79805 0.91711 1.06815 1.22743 0.84737 0.88140 0.73813 1.90707 1.86473 1.16451 1.44277 1.86502 1.13481 1.40204 1.83062 1.22845 0.84314 0.90647 1.03952 1.19126 0.83659 0.88317 0.85757 1.90614 1.86465 1.13170 1.53576 1.42021 1.05554 1.07764 1.66410 1.19427 0.80344 0.95179 1.48765 0.85963 1.25045 0.94895 0.98742 0.97211 1.69614 0.97392 1.36072 1.48161 0.86672 0.78662 0.85010 0.79117 1.19370 1.19904 1.19354 1.74214 0.97973 1.14068 1.27094 1.84814 1.10243 1.31991 1.68862 0.89514 0.88808 0.88803 0.80285 0.86867 0.86860 0.89078 0.89060 0.79341 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.17 10.45 36.00 0.38 0.20 16 2 C -0.01 -0.06 7.48 -35.36 -0.26 -0.32 16 3 C -0.23 -1.98 11.11 -39.23 -0.44 -2.41 16 4 C 0.21 2.53 8.01 -16.66 -0.13 2.39 16 5 O -0.26 -3.48 9.74 -38.78 -0.38 -3.86 16 6 C 0.07 0.93 6.25 36.01 0.23 1.15 16 7 C 0.46 7.21 8.03 36.01 0.29 7.50 16 8 O -0.49 -8.62 16.25 -25.48 -0.41 -9.03 16 9 O -0.32 -5.64 9.75 -45.88 -0.45 -6.09 16 10 C 0.06 1.06 5.94 36.01 0.21 1.28 16 11 C 0.45 10.30 7.86 -10.98 -0.09 10.22 16 12 O -0.56 -15.27 16.08 -14.11 -0.23 -15.50 16 13 N -0.58 -13.65 5.09 -10.96 -0.06 -13.71 16 14 C -0.31 -8.62 10.16 -14.94 -0.15 -8.78 16 15 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 16 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 17 N -0.87 -25.04 13.96 55.50 0.77 -24.27 16 18 Si 0.88 18.99 27.74 -169.99 -4.71 14.27 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 22 N -0.41 -4.85 11.54 30.38 0.35 -4.50 16 23 O 0.10 0.99 11.19 17.07 0.19 1.19 16 24 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 25 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 26 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 27 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.43 8.13 -51.93 -0.42 1.00 16 31 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 32 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 33 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 309.34 15.07 4.66 4.66 Total: -1.00 -35.46 309.34 -3.49 -38.95 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -3.17 Total: 5.53 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -0.06 Total: 12.35 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 1.07 Total: -42.48 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -1.27 Total: -33.29 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.46 -3.49 -38.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740947128.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.188 kcal (2) G-P(sol) polarization free energy of solvation -35.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds