Wall clock time and date at job start Wed Apr 15 2020 11:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35282 * 126.70590 * 2 1 4 4 C 1.41923 * 103.95813 * 180.02562 * 3 2 1 5 5 O 1.35706 * 126.88027 * 180.26245 * 4 3 2 6 6 C 1.42901 * 117.00447 * 179.71253 * 5 4 3 7 7 C 1.50703 * 109.47311 * 180.02562 * 6 5 4 8 8 O 1.20825 * 119.99577 * 359.97438 * 7 6 5 9 9 O 1.34222 * 120.00135 * 179.97438 * 7 6 5 10 10 C 1.45203 * 117.00048 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.46937 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00096 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99674 * 180.02562 * 11 10 9 14 14 C 1.37095 * 119.99939 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99935 * 0.02562 * 14 13 11 16 16 C 1.38948 * 120.00436 * 179.97438 * 14 13 11 17 17 N 1.31409 * 120.00267 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99497 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47478 * 89.99734 * 18 16 14 20 20 H 1.48506 * 109.46975 * 209.99502 * 18 16 14 21 21 H 1.48494 * 109.47347 * 329.99409 * 18 16 14 22 22 N 1.30624 * 106.24445 * 0.02562 * 4 3 2 23 23 O 1.20905 * 111.49643 * 359.97438 * 22 4 3 24 24 H 1.09002 * 109.46727 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47372 * 299.95101 * 1 2 3 26 26 H 1.08998 * 109.47308 * 59.95142 * 1 2 3 27 27 H 1.07996 * 128.01544 * 0.04302 * 3 2 1 28 28 H 1.09005 * 109.46855 * 299.99920 * 6 5 4 29 29 H 1.08992 * 109.47170 * 59.99843 * 6 5 4 30 30 H 1.09003 * 109.46883 * 299.99909 * 10 9 7 31 31 H 1.08998 * 109.46605 * 60.00370 * 10 9 7 32 32 H 0.97001 * 120.00159 * 359.97438 * 13 11 10 33 33 H 0.97003 * 119.99424 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0846 0.0000 4 6 3.6244 0.5358 -0.0006 5 8 4.7952 1.2219 0.0041 6 6 5.9988 0.4515 0.0087 7 6 7.1879 1.3773 0.0142 8 8 7.0217 2.5741 0.0137 9 8 8.4315 0.8724 0.0197 10 6 9.5290 1.8232 0.0242 11 6 10.8390 1.0782 0.0294 12 8 10.8469 -0.1347 0.0297 13 7 12.0017 1.7597 0.0346 14 6 13.1934 1.0820 0.0398 15 1 13.2005 0.0020 0.0393 16 6 14.3922 1.7846 0.0447 17 7 15.5345 1.1350 0.0502 18 14 14.3799 3.6525 0.0449 19 1 14.3710 4.1475 1.4450 20 1 15.5921 4.1555 -0.6502 21 1 13.1672 4.1397 -0.6601 22 7 3.4765 -0.7620 -0.0015 23 8 2.3086 -1.0748 -0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5130 0.8904 26 1 -0.3634 0.5146 -0.8895 27 1 2.0310 2.1264 0.0006 28 1 6.0242 -0.1773 0.8988 29 1 6.0313 -0.1770 -0.8811 30 1 9.4709 2.4493 -0.8662 31 1 9.4633 2.4496 0.9138 32 1 11.9953 2.7297 0.0347 33 1 16.3713 1.6255 0.0540 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740947128.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:52 Heat of formation + Delta-G solvation = -105.217033 kcal Electronic energy + Delta-G solvation = -20866.590668 eV Core-core repulsion = 17089.550143 eV Total energy + Delta-G solvation = -3777.040525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.99319 -41.97206 -40.44387 -39.85983 -37.66704 -36.13203 -34.80772 -33.90664 -33.64371 -31.24944 -29.56532 -28.58474 -26.43516 -24.52428 -23.25846 -21.86434 -21.60147 -20.57740 -19.47620 -19.01419 -18.43278 -18.32192 -18.19147 -17.59654 -17.34243 -16.81910 -16.72659 -15.70730 -15.68001 -15.06593 -14.89543 -14.64489 -14.27711 -14.24791 -14.16583 -13.90170 -13.68367 -13.23128 -13.05595 -12.98531 -12.48495 -12.17993 -12.03367 -12.01524 -11.86737 -11.62114 -10.67199 -10.55148 -10.37503 -10.32355 -8.48540 -6.12215 0.42581 0.57952 0.78429 1.16194 1.28627 1.31946 1.42763 1.71156 1.87142 2.18269 2.26114 2.70245 3.04074 3.05520 3.39570 3.75778 3.76216 3.83668 3.91052 3.97330 4.03831 4.07247 4.37313 4.77954 4.81272 4.90523 5.00783 5.28655 5.43956 5.67807 5.81941 6.32113 6.47412 6.73612 7.18864 7.21666 7.73019 8.67905 Molecular weight = 284.09amu Principal moments of inertia in cm(-1) A = 0.060005 B = 0.002458 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.517424 B =11389.181712 C =11829.940795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.010 3.990 3 C -0.245 4.245 4 C 0.190 3.810 5 O -0.277 6.277 6 C 0.080 3.920 7 C 0.473 3.527 8 O -0.510 6.510 9 O -0.336 6.336 10 C 0.068 3.932 11 C 0.447 3.553 12 O -0.609 6.609 13 N -0.573 5.573 14 C -0.335 4.335 15 H 0.061 0.939 16 C -0.008 4.008 17 N -0.924 5.924 18 Si 0.962 3.038 19 H -0.254 1.254 20 H -0.271 1.271 21 H -0.231 1.231 22 N -0.433 5.433 23 O 0.094 5.906 24 H 0.098 0.902 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.200 0.800 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.394 0.606 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.561 5.271 -0.121 31.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.054 4.054 3 C -0.267 4.267 4 C -0.007 4.007 5 O -0.184 6.184 6 C 0.004 3.996 7 C 0.315 3.685 8 O -0.398 6.398 9 O -0.252 6.252 10 C -0.008 4.008 11 C 0.234 3.766 12 O -0.494 6.494 13 N -0.215 5.215 14 C -0.463 4.463 15 H 0.079 0.921 16 C -0.208 4.208 17 N -0.563 5.563 18 Si 0.782 3.218 19 H -0.179 1.179 20 H -0.196 1.196 21 H -0.154 1.154 22 N -0.160 5.160 23 O 0.033 5.967 24 H 0.116 0.884 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.217 0.783 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.230 0.770 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -30.418 4.098 -0.121 30.693 hybrid contribution 0.898 1.366 -0.002 1.635 sum -29.520 5.464 -0.122 30.022 Atomic orbital electron populations 1.20693 0.79816 1.06439 1.06227 1.25199 0.98126 0.84061 0.97966 1.22159 0.86820 1.03301 1.14377 1.22370 0.88229 0.88609 1.01471 1.86128 1.10600 1.31778 1.89897 1.21870 0.78795 0.90929 1.08037 1.23140 0.84381 0.88262 0.72689 1.90691 1.86493 1.17340 1.45322 1.86493 1.14356 1.40821 1.83489 1.22722 0.81447 0.89790 1.06866 1.20111 0.85308 0.87978 0.83177 1.90591 1.87605 1.15918 1.55258 1.41788 1.04501 1.08603 1.66615 1.19002 0.82946 0.93115 1.51281 0.92105 1.26113 0.93509 1.05696 0.95494 1.69782 0.98528 1.39190 1.48814 0.85405 0.80235 0.75992 0.80213 1.17875 1.19629 1.15433 1.74199 0.99222 1.14426 1.28147 1.84766 1.10006 1.33066 1.68843 0.88352 0.86857 0.86850 0.78271 0.85592 0.85590 0.86081 0.85977 0.76989 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.09 10.45 71.24 0.74 0.65 16 2 C 0.01 0.12 7.48 25.00 0.19 0.30 16 3 C -0.24 -3.78 11.11 22.50 0.25 -3.53 16 4 C 0.19 4.35 8.01 85.78 0.69 5.03 16 5 O -0.28 -7.21 9.74 -71.19 -0.69 -7.90 16 6 C 0.08 1.93 6.25 71.24 0.45 2.38 16 7 C 0.47 14.06 8.03 71.24 0.57 14.63 16 8 O -0.51 -16.95 16.25 28.40 0.46 -16.49 16 9 O -0.34 -11.57 9.75 -44.99 -0.44 -12.01 16 10 C 0.07 2.29 5.94 71.24 0.42 2.71 16 11 C 0.45 20.64 7.86 87.66 0.69 21.33 16 12 O -0.61 -34.66 16.08 15.74 0.25 -34.41 16 13 N -0.57 -26.86 5.09 -306.99 -1.56 -28.43 16 14 C -0.33 -19.36 10.16 84.04 0.85 -18.50 16 15 H 0.06 4.18 7.39 -2.91 -0.02 4.16 16 16 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 17 N -0.92 -54.56 13.96 21.66 0.30 -54.25 16 18 Si 0.96 37.79 27.74 68.60 1.90 39.69 16 19 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 22 N -0.43 -10.13 11.54 -172.61 -1.99 -12.12 16 23 O 0.09 1.74 11.19 71.26 0.80 2.53 16 24 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 28 H 0.13 2.71 8.14 -2.38 -0.02 2.69 16 29 H 0.13 2.71 8.14 -2.39 -0.02 2.70 16 30 H 0.12 3.38 8.13 -2.39 -0.02 3.37 16 31 H 0.12 3.39 8.13 -2.39 -0.02 3.37 16 32 H 0.39 15.06 5.76 -92.71 -0.53 14.52 16 33 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -82.17 309.34 4.93 -77.24 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.58 Total: 21.11 kcal Atomic # 6 Polarization: 19.72 SS G_CDS: 5.32 Total: 25.04 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -3.25 Total: -94.81 kcal Atomic # 8 Polarization: -68.66 SS G_CDS: 0.38 Total: -68.28 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.90 Total: 39.69 kcal Total: -82.17 4.93 -77.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740947128.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.975 kcal (2) G-P(sol) polarization free energy of solvation -82.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds