Wall clock time and date at job start Wed Apr 15 2020 11:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37097 * 120.00038 * 2 1 4 4 H 1.08005 * 119.99559 * 202.40604 * 3 2 1 5 5 C 1.38944 * 120.00124 * 22.40612 * 3 2 1 6 6 N 1.31417 * 119.99912 * 11.59910 * 5 3 2 7 7 Si 1.86800 * 120.00352 * 191.59228 * 5 3 2 8 8 H 1.48500 * 109.47013 * 60.00341 * 7 5 3 9 9 H 1.48493 * 109.47348 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47252 * 300.00661 * 7 5 3 11 11 C 1.34777 * 119.99959 * 180.02562 * 2 1 3 12 12 O 1.21292 * 120.00226 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00226 * 359.97438 * 11 2 1 14 14 C 1.52996 * 109.47613 * 180.02562 * 13 11 2 15 15 C 1.50699 * 109.47408 * 180.02562 * 14 13 11 16 16 O 1.21286 * 119.99991 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00021 * 180.02562 * 15 14 13 18 18 C 1.39068 * 120.00253 * 179.97438 * 17 15 14 19 19 N 1.29897 * 125.65073 * 0.02869 * 18 17 15 20 20 N 1.26247 * 117.66014 * 179.97438 * 19 18 17 21 21 C 1.29520 * 116.57934 * 359.97438 * 20 19 18 22 22 S 1.71316 * 125.65755 * 179.71646 * 18 17 15 23 23 H 1.08994 * 109.46849 * 272.15462 * 1 2 3 24 24 H 1.08998 * 109.47083 * 32.15757 * 1 2 3 25 25 H 1.08999 * 109.46986 * 152.16121 * 1 2 3 26 26 H 0.96998 * 120.00189 * 179.97438 * 6 5 3 27 27 H 1.09008 * 109.46790 * 59.99645 * 13 11 2 28 28 H 1.08998 * 109.46886 * 300.00403 * 13 11 2 29 29 H 1.08999 * 109.47240 * 59.99806 * 14 13 11 30 30 H 1.09007 * 109.46723 * 300.00269 * 14 13 11 31 31 H 0.97003 * 120.00205 * 359.97438 * 17 15 14 32 32 H 1.08007 * 126.14059 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1694 1.2225 -0.3565 5 6 1.5345 2.3452 0.4586 6 7 0.3897 2.2707 1.0996 7 14 2.3337 4.0078 0.1644 8 1 2.4815 4.2344 -1.2957 9 1 1.4832 5.0760 0.7480 10 1 3.6719 4.0345 0.8075 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 6 2.3796 -3.6353 -0.0005 15 6 1.6261 -4.9404 -0.0012 16 8 0.4133 -4.9403 -0.0011 17 7 2.3000 -6.1076 -0.0007 18 6 1.6047 -7.3120 -0.0008 19 7 0.3120 -7.4399 -0.0017 20 7 -0.1610 -8.6104 -0.0021 21 6 0.6957 -9.5817 -0.0021 22 16 2.3109 -8.8728 -0.0072 23 1 -0.3633 0.0386 1.0269 24 1 -0.3633 0.8700 -0.5470 25 1 -0.3633 -0.9087 -0.4799 26 1 -0.0402 3.0790 1.4201 27 1 0.7584 -2.5298 -0.8903 28 1 0.7591 -2.5302 0.8897 29 1 3.0063 -3.5776 0.8894 30 1 3.0063 -3.5775 -0.8906 31 1 3.2700 -6.1076 -0.0004 32 1 0.4629 -10.6364 -0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177446750.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:42 Heat of formation + Delta-G solvation = -12.260268 kcal Electronic energy + Delta-G solvation = -19251.256732 eV Core-core repulsion = 15953.292737 eV Total energy + Delta-G solvation = -3297.963995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.073 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.38181 -41.06536 -40.17859 -36.73779 -36.45403 -34.05849 -33.41402 -31.58399 -28.67310 -27.82259 -26.78950 -25.45964 -23.40172 -20.98290 -20.71127 -20.20594 -18.91160 -18.56456 -18.37589 -17.45546 -17.33443 -16.69095 -16.35521 -15.91902 -15.74853 -15.62032 -14.98471 -14.41877 -14.31347 -14.12685 -13.49065 -13.27125 -13.14554 -12.93995 -12.65459 -12.61531 -12.32958 -12.14631 -12.06246 -11.71966 -11.41589 -11.01120 -10.84197 -10.66590 -10.36301 -9.95065 -9.69970 -8.31749 -5.98239 -0.54073 -0.40643 0.21025 1.28105 1.40098 1.41871 1.52703 1.66271 1.78722 2.02037 2.28902 2.99405 3.10603 3.30731 3.63743 3.88331 4.05642 4.12712 4.22945 4.52379 4.54342 4.75678 4.85285 4.86901 5.02273 5.04401 5.37548 5.45175 5.92359 6.09052 6.46573 6.82426 7.15652 7.47511 7.65260 8.01517 8.69960 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.056683 B = 0.002901 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.854551 B = 9651.063921 C =10074.324989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.465 5.465 3 C -0.345 4.345 4 H 0.078 0.922 5 C -0.006 4.006 6 N -0.900 5.900 7 Si 0.992 3.008 8 H -0.267 1.267 9 H -0.273 1.273 10 H -0.274 1.274 11 C 0.441 3.559 12 O -0.626 6.626 13 C -0.105 4.105 14 C -0.101 4.101 15 C 0.517 3.483 16 O -0.512 6.512 17 N -0.616 5.616 18 C 0.206 3.794 19 N -0.333 5.333 20 N -0.277 5.277 21 C -0.012 4.012 22 S 0.195 5.805 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.273 0.727 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.446 0.554 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.880 -22.742 -2.302 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.183 5.183 3 C -0.473 4.473 4 H 0.096 0.904 5 C -0.208 4.208 6 N -0.539 5.539 7 Si 0.816 3.184 8 H -0.192 1.192 9 H -0.197 1.197 10 H -0.199 1.199 11 C 0.230 3.770 12 O -0.514 6.514 13 C -0.146 4.146 14 C -0.142 4.142 15 C 0.303 3.697 16 O -0.383 6.383 17 N -0.271 5.271 18 C -0.164 4.164 19 N -0.178 5.178 20 N -0.111 5.111 21 C -0.315 4.315 22 S 0.433 5.567 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.289 0.711 32 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 4.112 -22.324 -2.220 22.808 hybrid contribution 0.381 1.099 0.081 1.166 sum 4.493 -21.225 -2.139 21.800 Atomic orbital electron populations 1.21429 0.79653 0.99951 1.01086 1.43860 1.06649 1.05013 1.62781 1.19650 0.99372 0.85700 1.42579 0.90422 1.26160 0.96989 1.03104 0.94533 1.70090 1.18021 1.30490 1.35269 0.85011 0.77981 0.76562 0.78878 1.19181 1.19746 1.19880 1.20798 0.87915 0.85998 0.82241 1.90459 1.15375 1.88038 1.57501 1.21166 0.98178 0.90498 1.04709 1.21251 0.98143 0.87252 1.07534 1.21445 0.88157 0.85541 0.74543 1.90842 1.15367 1.86979 1.45113 1.43005 1.11393 1.00732 1.71997 1.26424 0.92997 0.94750 1.02269 1.71497 1.09011 1.15784 1.21473 1.71365 1.31127 0.93875 1.14715 1.32043 0.88871 1.06759 1.03810 1.84494 1.09914 0.93606 1.68704 0.93697 0.92836 0.91822 0.91764 0.88817 0.89476 0.86478 0.86105 0.71120 0.72187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.68 8.52 127.77 1.09 6.77 16 2 N -0.46 -24.39 3.02 -658.90 -1.99 -26.38 16 3 C -0.35 -19.71 9.29 84.04 0.78 -18.92 16 4 H 0.08 4.64 7.41 -2.91 -0.02 4.62 16 5 C -0.01 -0.35 5.11 84.92 0.43 0.09 16 6 N -0.90 -48.81 10.62 21.66 0.23 -48.58 16 7 Si 0.99 42.68 29.57 68.60 2.03 44.70 16 8 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 C 0.44 21.08 7.63 87.66 0.67 21.75 16 12 O -0.63 -33.06 15.67 -3.07 -0.05 -33.11 16 13 C -0.10 -3.80 3.51 29.85 0.10 -3.69 16 14 C -0.10 -2.80 4.99 29.85 0.15 -2.65 16 15 C 0.52 14.34 7.79 87.66 0.68 15.02 16 16 O -0.51 -19.10 14.66 -3.05 -0.04 -19.14 16 17 N -0.62 -12.26 5.41 -313.16 -1.69 -13.96 16 18 C 0.21 4.60 8.14 179.10 1.46 6.06 16 19 N -0.33 -10.25 9.74 -59.09 -0.58 -10.82 16 20 N -0.28 -7.15 11.65 -57.36 -0.67 -7.82 16 21 C -0.01 -0.16 12.69 130.58 1.66 1.49 16 22 S 0.20 2.16 23.31 -56.49 -1.32 0.85 16 23 H 0.04 2.18 7.54 -2.39 -0.02 2.16 16 24 H 0.05 2.61 7.06 -2.39 -0.02 2.59 16 25 H 0.06 2.48 6.36 -2.39 -0.02 2.46 16 26 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 27 H 0.09 3.26 7.36 -2.38 -0.02 3.24 16 28 H 0.09 3.19 8.06 -2.39 -0.02 3.17 16 29 H 0.12 3.01 8.10 -2.39 -0.02 3.00 16 30 H 0.12 3.00 8.10 -2.38 -0.02 2.98 16 31 H 0.45 4.70 8.82 -92.71 -0.82 3.89 16 32 H 0.26 0.68 8.06 -2.91 -0.02 0.66 16 Total: -1.00 -81.63 297.82 3.31 -78.32 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.36 Total: 10.04 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 7.02 Total: 25.91 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -4.70 Total: -107.56 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.09 Total: -52.25 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.32 Total: 0.85 kcal Total: -81.63 3.31 -78.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177446750.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.063 kcal (2) G-P(sol) polarization free energy of solvation -81.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds