Wall clock time and date at job start Wed Apr 15 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34266 * 125.74905 * 2 1 4 4 C 1.38051 * 107.41417 * 180.02562 * 3 2 1 5 5 C 1.47432 * 126.41200 * 179.97438 * 4 3 2 6 6 O 1.21603 * 120.00141 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99368 * 179.97438 * 5 4 3 8 8 N 1.40109 * 119.99481 * 180.02562 * 7 5 4 9 9 C 1.34777 * 119.99659 * 180.27982 * 8 7 5 10 10 O 1.21283 * 119.99990 * 359.71760 * 9 8 7 11 11 C 1.50698 * 119.99538 * 179.72422 * 9 8 7 12 12 S 1.81005 * 109.46906 * 179.97438 * 11 9 8 13 13 C 1.76201 * 99.99828 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00390 * 359.97438 * 13 12 11 15 15 C 1.38797 * 119.99869 * 179.97438 * 13 12 11 16 16 N 1.31633 * 119.99970 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00277 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46825 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46991 * 120.00124 * 17 15 13 20 20 H 1.48501 * 109.46940 * 240.00370 * 17 15 13 21 21 C 1.41293 * 107.16867 * 0.22661 * 4 3 2 22 22 N 1.30447 * 108.02326 * 359.61630 * 21 4 3 23 23 H 1.09005 * 109.47324 * 90.00029 * 1 2 3 24 24 H 1.09001 * 109.47035 * 209.99886 * 1 2 3 25 25 H 1.08995 * 109.47398 * 330.00084 * 1 2 3 26 26 H 1.07999 * 126.29375 * 0.03471 * 3 2 1 27 27 H 0.97000 * 120.00718 * 0.02562 * 7 5 4 28 28 H 0.97001 * 119.99794 * 359.97438 * 8 7 5 29 29 H 1.09003 * 109.47112 * 299.99065 * 11 9 8 30 30 H 1.08993 * 109.47916 * 59.99687 * 11 9 8 31 31 H 0.97008 * 120.00004 * 179.97438 * 16 15 13 32 32 H 1.07995 * 125.98331 * 179.78113 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0897 0.0000 4 6 3.5598 0.6554 -0.0006 5 6 4.7637 1.5064 -0.0013 6 8 4.6524 2.7173 -0.0010 7 7 5.9876 0.9421 -0.0013 8 7 7.1318 1.7507 -0.0015 9 6 8.3558 1.1865 -0.0072 10 8 8.4667 -0.0213 -0.0070 11 6 9.5863 2.0563 -0.0137 12 16 11.0640 1.0109 -0.0196 13 6 12.3159 2.2508 -0.0273 14 1 12.0415 3.2953 -0.0276 15 6 13.6548 1.8851 -0.0328 16 7 13.9893 0.6120 -0.0329 17 14 14.9821 3.1996 -0.0417 18 1 14.3486 4.5427 -0.0407 19 1 15.8321 3.0528 1.1672 20 1 15.8206 3.0481 -1.2579 21 6 3.5310 -0.7572 -0.0063 22 7 2.2826 -1.1355 -0.0006 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5138 26 1 1.9164 2.1171 0.0005 27 1 6.0765 -0.0239 -0.0012 28 1 7.0430 2.7167 -0.0020 29 1 9.5822 2.6850 -0.9041 30 1 9.5909 2.6861 0.8759 31 1 14.9251 0.3564 -0.0371 32 1 4.3918 -1.4094 -0.0115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251915106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:44 Heat of formation + Delta-G solvation = 42.128487 kcal Electronic energy + Delta-G solvation = -18513.620680 eV Core-core repulsion = 15218.015158 eV Total energy + Delta-G solvation = -3295.605521 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.74839 -39.95523 -38.49665 -35.15953 -33.92135 -32.45505 -31.83473 -30.61468 -28.76752 -27.21848 -25.50669 -23.30692 -21.58511 -21.26772 -20.42952 -18.46220 -17.72266 -17.58247 -16.51178 -16.11809 -15.56536 -15.42826 -14.96773 -14.82376 -14.56904 -14.53458 -14.10151 -13.42119 -13.34151 -13.15720 -13.08326 -12.64913 -12.31421 -11.49829 -11.13237 -11.07081 -11.05205 -10.79675 -10.28236 -10.02097 -9.85268 -9.71143 -9.16550 -9.09724 -8.29732 -8.23619 -6.54509 -6.24627 -3.95869 1.13762 1.70826 1.79723 2.08164 2.82673 3.18337 3.21277 3.25702 3.29750 3.42063 3.91895 4.17111 4.28196 4.32807 4.55746 4.61249 4.71201 4.88200 5.04325 5.06014 5.11152 5.32736 5.57259 5.79481 5.97006 6.06986 6.34749 6.73409 6.79477 7.11900 7.58165 7.61821 7.95727 8.33156 8.53195 9.21217 10.82790 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.062723 B = 0.002580 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.296948 B =10850.479661 C =11276.300025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.364 5.364 3 C 0.135 3.865 4 C -0.287 4.287 5 C 0.597 3.403 6 O -0.554 6.554 7 N -0.516 5.516 8 N -0.529 5.529 9 C 0.535 3.465 10 O -0.517 6.517 11 C -0.145 4.145 12 S -0.052 6.052 13 C -0.536 4.536 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.920 3.080 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.085 3.915 22 N -0.295 5.295 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.191 0.809 27 H 0.430 0.570 28 H 0.430 0.570 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.268 0.732 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.049 1.213 0.115 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.143 5.143 3 C -0.017 4.017 4 C -0.303 4.303 5 C 0.384 3.616 6 O -0.432 6.432 7 N -0.262 5.262 8 N -0.280 5.280 9 C 0.321 3.679 10 O -0.390 6.390 11 C -0.297 4.297 12 S 0.174 5.826 13 C -0.684 4.684 14 H 0.094 0.906 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.747 3.253 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.103 4.103 22 N -0.114 5.114 23 H 0.100 0.900 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.208 0.792 27 H 0.272 0.728 28 H 0.272 0.728 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -26.768 -1.100 0.122 26.791 hybrid contribution 1.242 2.863 -0.024 3.121 sum -25.526 1.763 0.099 25.587 Atomic orbital electron populations 1.22028 0.73199 1.05158 1.04087 1.48459 1.07397 1.03852 1.54560 1.22941 0.89792 0.93877 0.95113 1.19890 0.92666 0.93353 1.24419 1.17186 0.80798 0.87249 0.76337 1.90788 1.86374 1.13811 1.52272 1.44513 0.97847 1.08033 1.75822 1.45134 0.96992 1.07612 1.78297 1.20673 0.82165 0.89581 0.75464 1.90721 1.85662 1.14334 1.48257 1.23479 0.97074 1.03345 1.05784 1.85430 0.91439 1.08954 1.96771 1.22913 0.92466 0.94037 1.59018 0.90649 1.25001 0.97982 0.96161 0.94453 1.70024 1.18182 1.15226 1.46834 0.86091 0.80589 0.80768 0.77901 1.19549 1.20562 1.20557 1.24198 0.95595 0.93812 0.96707 1.77238 1.01851 1.07648 1.24690 0.90033 0.88696 0.88871 0.79170 0.72775 0.72781 0.88453 0.88452 0.92178 0.78899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.29 11.44 59.84 0.68 0.98 16 2 N -0.36 -2.80 3.98 -67.60 -0.27 -3.06 16 3 C 0.13 1.10 11.30 -16.56 -0.19 0.92 16 4 C -0.29 -2.96 6.13 -105.06 -0.64 -3.60 16 5 C 0.60 7.60 7.93 -12.52 -0.10 7.50 16 6 O -0.55 -8.42 16.74 5.27 0.09 -8.33 16 7 N -0.52 -6.76 6.25 30.43 0.19 -6.57 16 8 N -0.53 -7.74 6.26 31.22 0.20 -7.54 16 9 C 0.53 9.66 7.96 -10.99 -0.09 9.57 16 10 O -0.52 -10.95 15.70 5.55 0.09 -10.86 16 11 C -0.14 -2.81 6.16 36.00 0.22 -2.58 16 12 S -0.05 -1.37 20.57 -107.50 -2.21 -3.58 16 13 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 14 H 0.08 1.99 7.80 -52.49 -0.41 1.58 16 15 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 16 N -0.87 -25.76 13.22 55.49 0.73 -25.02 16 17 Si 0.92 21.17 29.55 -169.99 -5.02 16.14 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.09 0.81 11.50 -16.98 -0.20 0.61 16 22 N -0.29 -2.97 12.50 30.86 0.39 -2.58 16 23 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 24 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 26 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 27 H 0.43 5.14 6.95 -182.59 -1.27 3.87 16 28 H 0.43 5.63 8.00 -182.59 -1.46 4.17 16 29 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 30 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.19 1.36 7.50 -52.49 -0.39 0.97 16 LS Contribution 310.84 15.07 4.68 4.68 Total: -1.00 -37.01 310.84 -6.45 -43.46 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.20 Total: 2.56 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -0.11 Total: 0.70 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 1.24 Total: -44.78 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.18 Total: -19.19 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.21 Total: -3.58 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -37.01 -6.45 -43.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251915106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.591 kcal (2) G-P(sol) polarization free energy of solvation -37.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds