Wall clock time and date at job start Wed Apr 15 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34266 * 125.74905 * 2 1 4 4 C 1.38051 * 107.41417 * 180.02562 * 3 2 1 5 5 C 1.47432 * 126.41200 * 179.97438 * 4 3 2 6 6 O 1.21603 * 120.00141 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99368 * 179.97438 * 5 4 3 8 8 N 1.40109 * 119.99481 * 180.02562 * 7 5 4 9 9 C 1.34777 * 119.99659 * 180.27982 * 8 7 5 10 10 O 1.21283 * 119.99990 * 359.71760 * 9 8 7 11 11 C 1.50698 * 119.99538 * 179.72422 * 9 8 7 12 12 S 1.81005 * 109.46906 * 179.97438 * 11 9 8 13 13 C 1.76201 * 99.99828 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00390 * 359.97438 * 13 12 11 15 15 C 1.38797 * 119.99869 * 179.97438 * 13 12 11 16 16 N 1.31633 * 119.99970 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00277 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46825 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46991 * 120.00124 * 17 15 13 20 20 H 1.48501 * 109.46940 * 240.00370 * 17 15 13 21 21 C 1.41293 * 107.16867 * 0.22661 * 4 3 2 22 22 N 1.30447 * 108.02326 * 359.61630 * 21 4 3 23 23 H 1.09005 * 109.47324 * 90.00029 * 1 2 3 24 24 H 1.09001 * 109.47035 * 209.99886 * 1 2 3 25 25 H 1.08995 * 109.47398 * 330.00084 * 1 2 3 26 26 H 1.07999 * 126.29375 * 0.03471 * 3 2 1 27 27 H 0.97000 * 120.00718 * 0.02562 * 7 5 4 28 28 H 0.97001 * 119.99794 * 359.97438 * 8 7 5 29 29 H 1.09003 * 109.47112 * 299.99065 * 11 9 8 30 30 H 1.08993 * 109.47916 * 59.99687 * 11 9 8 31 31 H 0.97008 * 120.00004 * 179.97438 * 16 15 13 32 32 H 1.07995 * 125.98331 * 179.78113 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0897 0.0000 4 6 3.5598 0.6554 -0.0006 5 6 4.7637 1.5064 -0.0013 6 8 4.6524 2.7173 -0.0010 7 7 5.9876 0.9421 -0.0013 8 7 7.1318 1.7507 -0.0015 9 6 8.3558 1.1865 -0.0072 10 8 8.4667 -0.0213 -0.0070 11 6 9.5863 2.0563 -0.0137 12 16 11.0640 1.0109 -0.0196 13 6 12.3159 2.2508 -0.0273 14 1 12.0415 3.2953 -0.0276 15 6 13.6548 1.8851 -0.0328 16 7 13.9893 0.6120 -0.0329 17 14 14.9821 3.1996 -0.0417 18 1 14.3486 4.5427 -0.0407 19 1 15.8321 3.0528 1.1672 20 1 15.8206 3.0481 -1.2579 21 6 3.5310 -0.7572 -0.0063 22 7 2.2826 -1.1355 -0.0006 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5138 26 1 1.9164 2.1171 0.0005 27 1 6.0765 -0.0239 -0.0012 28 1 7.0430 2.7167 -0.0020 29 1 9.5822 2.6850 -0.9041 30 1 9.5909 2.6861 0.8759 31 1 14.9251 0.3564 -0.0371 32 1 4.3918 -1.4094 -0.0115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251915106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:44 Heat of formation + Delta-G solvation = 13.340575 kcal Electronic energy + Delta-G solvation = -18514.869017 eV Core-core repulsion = 15218.015158 eV Total energy + Delta-G solvation = -3296.853859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.44359 -41.17457 -39.74289 -36.39915 -34.56743 -34.51273 -33.03663 -31.45278 -30.03792 -27.86301 -27.57598 -24.17343 -22.69009 -22.08301 -21.39483 -19.91016 -19.04776 -18.86047 -17.65906 -16.93044 -16.86101 -16.54898 -16.52715 -16.16845 -15.69980 -15.64898 -15.24096 -14.87043 -14.52228 -13.93791 -13.83717 -13.53377 -13.46389 -13.14387 -12.90499 -12.61714 -12.41882 -12.23580 -11.73093 -11.38124 -11.14063 -11.11558 -10.63994 -10.27760 -9.92459 -9.39365 -8.64435 -8.33525 -6.10801 0.42676 0.59591 1.02497 1.35285 1.43201 1.44685 1.46869 1.55331 1.69470 2.27766 2.31799 2.95617 3.01304 3.28274 3.46328 3.72820 3.84290 4.04399 4.13350 4.28228 4.44182 4.51648 4.52833 4.63647 4.72795 5.28897 5.45492 5.52036 5.69883 5.83273 6.22393 6.39892 6.50476 6.80494 7.08736 7.29277 8.75690 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.062723 B = 0.002580 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.296948 B =10850.479661 C =11276.300025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.359 5.359 3 C 0.148 3.852 4 C -0.314 4.314 5 C 0.603 3.397 6 O -0.580 6.580 7 N -0.516 5.516 8 N -0.513 5.513 9 C 0.541 3.459 10 O -0.553 6.553 11 C -0.123 4.123 12 S -0.136 6.136 13 C -0.546 4.546 14 H 0.085 0.915 15 C 0.014 3.986 16 N -0.911 5.911 17 Si 0.998 3.002 18 H -0.257 1.257 19 H -0.275 1.275 20 H -0.275 1.275 21 C 0.084 3.916 22 N -0.323 5.323 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.122 0.878 26 H 0.218 0.782 27 H 0.435 0.565 28 H 0.440 0.560 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.271 0.729 32 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.698 3.048 0.125 27.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.136 5.136 3 C -0.006 4.006 4 C -0.330 4.330 5 C 0.393 3.607 6 O -0.460 6.460 7 N -0.264 5.264 8 N -0.263 5.263 9 C 0.327 3.673 10 O -0.429 6.429 11 C -0.275 4.275 12 S 0.091 5.909 13 C -0.694 4.694 14 H 0.103 0.897 15 C -0.191 4.191 16 N -0.547 5.547 17 Si 0.820 3.180 18 H -0.180 1.180 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.104 4.104 22 N -0.143 5.143 23 H 0.114 0.886 24 H 0.116 0.884 25 H 0.141 0.859 26 H 0.234 0.766 27 H 0.278 0.722 28 H 0.284 0.716 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.080 0.920 32 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -28.481 0.742 0.133 28.491 hybrid contribution 1.497 2.300 -0.029 2.745 sum -26.984 3.042 0.105 27.155 Atomic orbital electron populations 1.22453 0.70588 1.06836 1.05553 1.48844 1.08804 1.03054 1.52933 1.23361 0.89132 0.95033 0.93054 1.19816 0.92491 0.93474 1.27224 1.17515 0.80921 0.87136 0.75158 1.90769 1.86663 1.14932 1.53609 1.44677 0.97273 1.08173 1.76228 1.44753 0.96879 1.08178 1.76531 1.20282 0.82813 0.88737 0.75480 1.90714 1.86196 1.15682 1.50318 1.23276 0.94193 1.02238 1.07827 1.85557 0.95686 1.12580 1.97076 1.23259 0.93026 0.94412 1.58675 0.89662 1.26100 1.00669 0.98546 0.93810 1.70178 1.18817 1.17630 1.48090 0.84914 0.77105 0.78004 0.77983 1.18044 1.20049 1.20044 1.24448 0.96051 0.93804 0.96078 1.77198 1.02276 1.09156 1.25665 0.88632 0.88368 0.85940 0.76561 0.72194 0.71643 0.86324 0.86324 0.91993 0.77630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 11.44 127.77 1.46 1.75 16 2 N -0.36 -4.74 3.98 -367.78 -1.46 -6.20 16 3 C 0.15 2.09 11.30 84.28 0.95 3.04 16 4 C -0.31 -6.07 6.13 -20.15 -0.12 -6.19 16 5 C 0.60 14.68 7.93 86.67 0.69 15.36 16 6 O -0.58 -16.80 16.74 -4.04 -0.07 -16.87 16 7 N -0.52 -13.10 6.25 -175.89 -1.10 -14.20 16 8 N -0.51 -14.42 6.26 -173.53 -1.09 -15.50 16 9 C 0.54 19.23 7.96 87.66 0.70 19.92 16 10 O -0.55 -23.68 15.70 -3.04 -0.05 -23.73 16 11 C -0.12 -4.65 6.16 71.24 0.44 -4.21 16 12 S -0.14 -7.27 20.57 -56.49 -1.16 -8.43 16 13 C -0.55 -30.41 9.50 67.95 0.65 -29.77 16 14 H 0.09 4.41 7.80 -2.91 -0.02 4.38 16 15 C 0.01 0.76 5.49 84.86 0.47 1.23 16 16 N -0.91 -55.03 13.22 21.65 0.29 -54.74 16 17 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 18 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 19 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 C 0.08 1.52 11.50 85.65 0.99 2.51 16 22 N -0.32 -6.12 12.50 -56.28 -0.70 -6.83 16 23 H 0.10 0.11 8.14 -2.38 -0.02 0.09 16 24 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.22 1.75 8.06 -2.91 -0.02 1.72 16 27 H 0.44 10.24 6.95 -213.31 -1.48 8.75 16 28 H 0.44 10.77 8.00 -213.31 -1.71 9.06 16 29 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 30 H 0.12 3.99 8.14 -2.40 -0.02 3.97 16 31 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 32 H 0.21 2.84 7.50 -2.91 -0.02 2.81 16 Total: -1.00 -80.82 310.84 0.89 -79.93 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -2.01 Total: 17.80 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 6.21 Total: 3.65 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -4.07 Total: -97.48 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.12 Total: -40.60 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -7.27 SS G_CDS: -1.16 Total: -8.43 kcal Total: -80.82 0.89 -79.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251915106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.270 kcal (2) G-P(sol) polarization free energy of solvation -80.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds