Wall clock time and date at job start Wed Apr 15 2020 11:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 S 1.81405 * 109.47061 * 119.99847 * 2 1 3 5 5 C 1.76205 * 102.99664 * 295.00204 * 4 2 1 6 6 C 1.34182 * 125.23940 * 179.71917 * 5 4 2 7 7 C 1.38544 * 114.70647 * 179.83550 * 6 5 4 8 8 C 1.33236 * 114.99598 * 0.45416 * 7 6 5 9 9 S 1.75851 * 109.75465 * 359.75691 * 8 7 6 10 10 C 1.50700 * 109.47452 * 239.99776 * 2 1 3 11 11 O 1.21283 * 119.99803 * 264.99929 * 10 2 1 12 12 N 1.34777 * 119.99675 * 85.27804 * 10 2 1 13 13 C 1.46496 * 120.00345 * 359.72090 * 12 10 2 14 14 C 1.46497 * 119.99525 * 179.72583 * 12 10 2 15 15 C 1.50709 * 109.47273 * 89.99834 * 14 12 10 16 16 H 1.07999 * 119.99476 * 359.97438 * 15 14 12 17 17 C 1.37873 * 120.00210 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99914 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00074 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46996 * 90.00193 * 19 17 15 21 21 H 1.48502 * 109.46931 * 210.00078 * 19 17 15 22 22 H 1.48498 * 109.47167 * 330.00145 * 19 17 15 23 23 H 1.08996 * 109.47622 * 300.00328 * 1 2 3 24 24 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 25 25 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 26 26 H 1.08001 * 122.64331 * 0.02562 * 6 5 4 27 27 H 1.08005 * 122.49904 * 180.21634 * 7 6 5 28 28 H 1.08007 * 125.12544 * 179.77723 * 8 7 6 29 29 H 1.08997 * 109.47115 * 90.00316 * 13 12 10 30 30 H 1.08995 * 109.47364 * 210.00706 * 13 12 10 31 31 H 1.09002 * 109.47090 * 330.00257 * 13 12 10 32 32 H 1.09000 * 109.46889 * 209.99487 * 14 12 10 33 33 H 1.09001 * 109.47460 * 330.00097 * 14 12 10 34 34 H 0.97000 * 120.00447 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4812 5 6 1.5826 0.1847 2.7922 6 6 1.7896 -0.0406 4.0987 7 6 1.2620 0.9227 4.9431 8 6 0.6228 1.9188 4.3312 9 16 0.6689 1.6739 2.5904 10 6 2.0324 -0.7104 -1.2304 11 8 2.3209 -1.8872 -1.1758 12 7 2.1665 -0.0367 -2.3900 13 6 1.8180 1.3847 -2.4559 14 6 2.6606 -0.7259 -3.5845 15 6 1.4972 -1.3053 -4.3476 16 1 0.4906 -1.1737 -3.9792 17 6 1.7180 -2.0034 -5.5158 18 7 2.9439 -2.1641 -5.9641 19 14 0.2761 -2.7222 -6.4612 20 1 -0.2188 -1.7242 -7.4432 21 1 0.7151 -3.9464 -7.1780 22 1 -0.8142 -3.0673 -5.5139 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.3277 -0.9032 4.4630 27 1 1.3583 0.8682 6.0175 28 1 0.1482 2.7514 4.8292 29 1 2.6955 1.9854 -2.2166 30 1 1.4740 1.6282 -3.4610 31 1 1.0252 1.5980 -1.7389 32 1 3.1939 -0.0174 -4.2182 33 1 3.3362 -1.5282 -3.2879 34 1 3.0994 -2.6556 -6.7858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096409111.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:38 Heat of formation + Delta-G solvation = 3.091983 kcal Electronic energy + Delta-G solvation = -17727.473059 eV Core-core repulsion = 14878.749341 eV Total energy + Delta-G solvation = -2848.723719 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.060 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.23496 -37.66999 -34.97679 -33.42110 -32.33782 -29.66373 -27.88057 -26.09547 -24.49957 -24.29509 -22.53837 -20.13647 -18.60534 -18.31720 -16.77580 -16.59611 -16.21775 -15.43511 -14.95196 -14.76591 -14.33277 -13.93244 -13.52318 -13.30356 -13.05752 -12.81731 -12.49561 -12.21365 -12.12798 -12.11592 -11.86576 -11.65601 -11.24770 -10.98319 -10.93406 -10.62852 -10.20901 -10.03430 -9.83050 -9.69579 -9.15039 -8.59744 -8.47938 -7.78581 -7.35131 -6.08818 -4.14134 0.76036 1.13704 1.29275 1.82011 2.46647 2.57181 3.19080 3.27710 3.34902 3.39487 3.77835 4.40344 4.75267 4.84130 4.89996 5.00930 5.17999 5.25888 5.41498 5.46252 5.54328 5.65938 5.81667 5.84735 6.03881 6.05519 6.16492 6.26522 6.92225 7.34861 7.41377 7.86363 8.16069 8.22460 8.76796 8.93345 9.51051 10.99380 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.037337 B = 0.003822 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.740078 B = 7324.827863 C = 7459.888055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 H 0.110 0.890 4 S 0.024 5.976 5 C -0.200 4.200 6 C -0.127 4.127 7 C -0.117 4.117 8 C -0.226 4.226 9 S 0.108 5.892 10 C 0.528 3.472 11 O -0.521 6.521 12 N -0.592 5.592 13 C 0.076 3.924 14 C 0.246 3.754 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.163 0.837 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.482 10.774 18.054 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.256 4.256 3 H 0.128 0.872 4 S 0.265 5.735 5 C -0.430 4.430 6 C -0.166 4.166 7 C -0.149 4.149 8 C -0.365 4.365 9 S 0.367 5.633 10 C 0.311 3.689 11 O -0.398 6.398 12 N -0.324 5.324 13 C -0.068 4.068 14 C 0.127 3.873 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.198 1.198 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.161 0.839 27 H 0.159 0.841 28 H 0.180 0.820 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.114 9.813 16.594 19.712 hybrid contribution -1.001 0.262 0.591 1.191 sum -5.115 10.075 17.184 20.566 Atomic orbital electron populations 1.22138 0.90613 1.04743 1.03228 1.23892 1.01605 1.03706 0.96373 0.87239 1.86041 1.67551 1.27920 0.91956 1.26604 1.09862 1.03880 1.02622 1.19899 1.04604 1.01879 0.90186 1.20110 0.99669 0.94130 1.00948 1.25610 1.09122 1.04983 0.96793 1.84374 1.54195 1.18785 1.05994 1.19190 0.79466 0.87015 0.83226 1.90726 1.49783 1.15062 1.84231 1.48070 1.63589 1.09901 1.10834 1.21776 0.99373 0.82254 1.03392 1.19375 0.95333 0.92856 0.79736 1.21404 0.93335 1.34872 1.07176 0.92381 1.24935 0.95970 0.95840 0.97306 1.69929 1.19468 1.41445 1.22385 0.86480 0.82411 0.78687 0.79763 1.20610 1.21018 1.19848 0.91141 0.90275 0.90137 0.83904 0.84116 0.81966 0.93371 0.90210 0.92316 0.94622 0.93616 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.74 37.16 0.32 -1.70 16 2 C -0.12 -1.91 1.77 -27.88 -0.05 -1.96 16 3 H 0.11 1.47 6.80 -51.92 -0.35 1.12 16 4 S 0.02 0.37 20.81 -107.50 -2.24 -1.87 16 5 C -0.20 -2.57 6.51 29.30 0.19 -2.38 16 6 C -0.13 -1.45 10.13 -40.90 -0.41 -1.86 16 7 C -0.12 -1.10 10.17 -41.21 -0.42 -1.52 16 8 C -0.23 -2.09 11.21 28.99 0.32 -1.76 16 9 S 0.11 1.16 19.63 -107.50 -2.11 -0.95 16 10 C 0.53 10.97 6.80 -10.98 -0.07 10.89 16 11 O -0.52 -13.14 15.72 5.55 0.09 -13.05 16 12 N -0.59 -12.36 2.86 -182.96 -0.52 -12.88 16 13 C 0.08 1.17 9.86 59.84 0.59 1.76 16 14 C 0.25 6.35 5.16 -5.19 -0.03 6.32 16 15 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 16 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 19 Si 0.90 21.67 29.54 -169.99 -5.02 16.64 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.07 0.83 5.06 -45.87 -0.23 0.59 16 24 H 0.08 1.02 6.84 -51.93 -0.36 0.66 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 28 H 0.16 1.08 8.06 -52.48 -0.42 0.65 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 31 H 0.06 0.73 5.18 -51.93 -0.27 0.47 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 33 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 312.38 15.07 4.71 4.71 Total: -1.00 -32.42 312.38 -8.43 -40.85 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -4.09 Total: -2.16 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 0.03 Total: -5.68 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.21 Total: -38.48 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -4.35 Total: -2.82 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.42 -8.43 -40.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096409111.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.942 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds