Wall clock time and date at job start Wed Apr 15 2020 11:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 S 1.81405 * 109.47061 * 119.99847 * 2 1 3 5 5 C 1.76205 * 102.99664 * 295.00204 * 4 2 1 6 6 C 1.34182 * 125.23940 * 179.71917 * 5 4 2 7 7 C 1.38544 * 114.70647 * 179.83550 * 6 5 4 8 8 C 1.33236 * 114.99598 * 0.45416 * 7 6 5 9 9 S 1.75851 * 109.75465 * 359.75691 * 8 7 6 10 10 C 1.50700 * 109.47452 * 239.99776 * 2 1 3 11 11 O 1.21283 * 119.99803 * 264.99929 * 10 2 1 12 12 N 1.34777 * 119.99675 * 85.27804 * 10 2 1 13 13 C 1.46496 * 120.00345 * 359.72090 * 12 10 2 14 14 C 1.46497 * 119.99525 * 179.72583 * 12 10 2 15 15 C 1.50709 * 109.47273 * 89.99834 * 14 12 10 16 16 H 1.07999 * 119.99476 * 359.97438 * 15 14 12 17 17 C 1.37873 * 120.00210 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99914 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00074 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46996 * 90.00193 * 19 17 15 21 21 H 1.48502 * 109.46931 * 210.00078 * 19 17 15 22 22 H 1.48498 * 109.47167 * 330.00145 * 19 17 15 23 23 H 1.08996 * 109.47622 * 300.00328 * 1 2 3 24 24 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 25 25 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 26 26 H 1.08001 * 122.64331 * 0.02562 * 6 5 4 27 27 H 1.08005 * 122.49904 * 180.21634 * 7 6 5 28 28 H 1.08007 * 125.12544 * 179.77723 * 8 7 6 29 29 H 1.08997 * 109.47115 * 90.00316 * 13 12 10 30 30 H 1.08995 * 109.47364 * 210.00706 * 13 12 10 31 31 H 1.09002 * 109.47090 * 330.00257 * 13 12 10 32 32 H 1.09000 * 109.46889 * 209.99487 * 14 12 10 33 33 H 1.09001 * 109.47460 * 330.00097 * 14 12 10 34 34 H 0.97000 * 120.00447 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4812 5 6 1.5826 0.1847 2.7922 6 6 1.7896 -0.0406 4.0987 7 6 1.2620 0.9227 4.9431 8 6 0.6228 1.9188 4.3312 9 16 0.6689 1.6739 2.5904 10 6 2.0324 -0.7104 -1.2304 11 8 2.3209 -1.8872 -1.1758 12 7 2.1665 -0.0367 -2.3900 13 6 1.8180 1.3847 -2.4559 14 6 2.6606 -0.7259 -3.5845 15 6 1.4972 -1.3053 -4.3476 16 1 0.4906 -1.1737 -3.9792 17 6 1.7180 -2.0034 -5.5158 18 7 2.9439 -2.1641 -5.9641 19 14 0.2761 -2.7222 -6.4612 20 1 -0.2188 -1.7242 -7.4432 21 1 0.7151 -3.9464 -7.1780 22 1 -0.8142 -3.0673 -5.5139 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.3277 -0.9032 4.4630 27 1 1.3583 0.8682 6.0175 28 1 0.1482 2.7514 4.8292 29 1 2.6955 1.9854 -2.2166 30 1 1.4740 1.6282 -3.4610 31 1 1.0252 1.5980 -1.7389 32 1 3.1939 -0.0174 -4.2182 33 1 3.3362 -1.5282 -3.2879 34 1 3.0994 -2.6556 -6.7858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096409111.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:38 Heat of formation + Delta-G solvation = -16.779682 kcal Electronic energy + Delta-G solvation = -17728.334759 eV Core-core repulsion = 14878.749341 eV Total energy + Delta-G solvation = -2849.585419 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.060 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.88653 -38.47417 -36.73893 -35.09822 -34.08659 -30.50353 -29.77124 -27.56351 -26.08467 -25.14185 -24.28165 -21.19876 -19.88143 -19.31084 -18.71037 -18.25485 -17.49543 -16.79961 -16.37137 -16.26136 -15.91829 -15.09060 -14.80092 -14.57538 -14.28070 -14.03606 -13.66672 -13.60031 -13.53564 -13.30342 -13.17169 -13.05952 -12.99919 -12.70852 -12.53985 -12.22992 -11.81974 -11.74204 -11.13043 -10.82354 -10.71802 -10.65471 -9.54638 -9.41790 -8.45075 -8.24428 -6.39251 -0.06177 0.04064 0.39313 1.00109 1.36214 1.39455 1.40433 1.49556 1.63383 1.79172 2.19350 2.39422 3.05787 3.37381 3.63519 3.77976 4.24137 4.27067 4.43869 4.48713 4.52285 4.63089 4.66076 4.84868 4.94083 5.02811 5.09109 5.18167 5.29282 5.49377 5.50206 5.75752 6.01639 6.54577 6.69620 7.16354 7.33897 8.83090 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.037337 B = 0.003822 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.740078 B = 7324.827863 C = 7459.888055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 H 0.135 0.865 4 S -0.033 6.033 5 C -0.226 4.226 6 C -0.121 4.121 7 C -0.127 4.127 8 C -0.209 4.209 9 S 0.112 5.888 10 C 0.519 3.481 11 O -0.578 6.578 12 N -0.598 5.598 13 C 0.069 3.931 14 C 0.260 3.740 15 C -0.544 4.544 16 H 0.056 0.944 17 C 0.008 3.992 18 N -0.928 5.928 19 Si 0.968 3.032 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.273 1.273 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.147 0.853 27 H 0.171 0.829 28 H 0.195 0.805 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.030 0.970 33 H -0.001 1.001 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.504 13.057 19.667 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.234 4.234 3 H 0.153 0.847 4 S 0.207 5.793 5 C -0.455 4.455 6 C -0.159 4.159 7 C -0.158 4.158 8 C -0.347 4.347 9 S 0.371 5.629 10 C 0.305 3.695 11 O -0.458 6.458 12 N -0.329 5.329 13 C -0.073 4.073 14 C 0.139 3.861 15 C -0.582 4.582 16 H 0.074 0.926 17 C -0.191 4.191 18 N -0.567 5.567 19 Si 0.793 3.207 20 H -0.187 1.187 21 H -0.207 1.207 22 H -0.197 1.197 23 H 0.113 0.887 24 H 0.109 0.891 25 H 0.080 0.920 26 H 0.164 0.836 27 H 0.188 0.812 28 H 0.212 0.788 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.154 12.163 18.226 22.760 hybrid contribution -0.342 -0.378 0.243 0.565 sum -6.497 11.785 18.469 22.852 Atomic orbital electron populations 1.22155 0.88990 1.04158 1.04969 1.23661 1.02551 1.03719 0.93459 0.84727 1.86213 1.69086 1.30211 0.93766 1.26380 1.12364 1.05037 1.01717 1.20247 1.03414 1.02220 0.90054 1.20377 0.99580 0.93532 1.02261 1.26063 1.07688 1.05343 0.95630 1.84248 1.53571 1.17347 1.07741 1.20028 0.78335 0.86632 0.84493 1.90688 1.52002 1.17754 1.85347 1.48058 1.63240 1.12006 1.09573 1.22103 1.01712 0.79016 1.04479 1.18846 0.94201 0.91792 0.81301 1.21680 0.93640 1.35288 1.07637 0.92587 1.25860 0.98791 0.96092 0.98357 1.70049 1.21592 1.42149 1.22956 0.85401 0.78753 0.78152 0.78428 1.18662 1.20750 1.19738 0.88742 0.89086 0.91979 0.83563 0.81206 0.78820 0.90767 0.90440 0.88935 0.95189 0.98279 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 8.74 71.98 0.63 -3.11 16 2 C -0.10 -3.10 1.77 29.85 0.05 -3.05 16 3 H 0.13 3.36 6.80 -2.39 -0.02 3.34 16 4 S -0.03 -1.05 20.81 -56.49 -1.18 -2.22 16 5 C -0.23 -5.49 6.51 66.89 0.44 -5.05 16 6 C -0.12 -2.51 10.13 21.42 0.22 -2.29 16 7 C -0.13 -1.93 10.17 21.21 0.22 -1.72 16 8 C -0.21 -2.97 11.21 66.69 0.75 -2.23 16 9 S 0.11 2.07 19.63 -56.49 -1.11 0.96 16 10 C 0.52 22.14 6.80 87.66 0.60 22.74 16 11 O -0.58 -30.77 15.72 -3.04 -0.05 -30.82 16 12 N -0.60 -25.33 2.86 -851.14 -2.43 -27.76 16 13 C 0.07 1.99 9.86 127.77 1.26 3.25 16 14 C 0.26 13.99 5.16 85.64 0.44 14.43 16 15 C -0.54 -31.14 9.39 25.60 0.24 -30.90 16 16 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 17 C 0.01 0.47 5.46 84.65 0.46 0.93 16 18 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 19 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H 0.09 2.00 5.06 -6.24 -0.03 1.97 16 24 H 0.09 2.13 6.84 -2.39 -0.02 2.11 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 27 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 28 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 31 H 0.09 2.04 5.18 -2.39 -0.01 2.03 16 32 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 33 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 34 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -73.95 312.38 3.93 -70.02 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.09 Total: 5.85 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 5.30 Total: -7.00 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.15 Total: -83.53 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.05 Total: -30.82 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.28 Total: -1.27 kcal Total: -73.95 3.93 -70.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096409111.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.244 kcal (2) G-P(sol) polarization free energy of solvation -73.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds