Wall clock time and date at job start Wed Apr 15 2020 11:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35631 * 125.67616 * 2 1 4 4 C 1.35518 * 108.84805 * 179.83208 * 3 2 1 5 5 Cl 1.73599 * 126.07180 * 180.13160 * 4 3 2 6 6 C 1.39883 * 107.84997 * 0.43118 * 4 3 2 7 7 C 1.37634 * 125.67214 * 180.31487 * 2 1 3 8 8 C 1.46664 * 126.22616 * 359.95575 * 7 2 1 9 9 O 1.21700 * 120.00178 * 5.05278 * 8 7 2 10 10 N 1.34778 * 120.00319 * 185.05514 * 8 7 2 11 11 C 1.46503 * 120.00276 * 185.10337 * 10 8 7 12 12 C 1.50704 * 109.46942 * 179.97438 * 11 10 8 13 13 O 1.21293 * 120.00197 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99647 * 180.02562 * 12 11 10 15 15 C 1.37096 * 120.00183 * 179.97438 * 14 12 11 16 16 H 1.08012 * 119.99494 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00367 * 179.97438 * 15 14 12 18 18 N 1.31407 * 119.99821 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99981 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46938 * 90.00162 * 19 17 15 21 21 H 1.48497 * 109.47250 * 210.00357 * 19 17 15 22 22 H 1.48502 * 109.47056 * 330.00213 * 19 17 15 23 23 H 1.09003 * 109.46538 * 264.16116 * 1 2 3 24 24 H 1.08990 * 109.47415 * 144.15888 * 1 2 3 25 25 H 1.08999 * 109.47067 * 24.15084 * 1 2 3 26 26 H 1.07992 * 125.57345 * 359.96508 * 3 2 1 27 27 H 1.08003 * 126.44936 * 179.69929 * 6 4 3 28 28 H 0.97000 * 119.99785 * 5.09485 * 10 8 7 29 29 H 1.09000 * 109.46768 * 299.99187 * 11 10 8 30 30 H 1.08993 * 109.46864 * 59.99481 * 11 10 8 31 31 H 0.96996 * 120.00218 * 359.97438 * 14 12 11 32 32 H 0.96996 * 119.99636 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2561 1.1018 0.0000 4 6 3.5532 0.7094 0.0038 5 17 4.9378 1.7566 0.0085 6 6 3.5782 -0.6891 -0.0038 7 6 2.2677 -1.1181 -0.0061 8 6 1.8120 -2.5121 -0.0129 9 8 0.6250 -2.7639 -0.1062 10 7 2.7077 -3.5144 0.0843 11 6 2.2656 -4.9061 -0.0346 12 6 3.4522 -5.8241 0.1090 13 8 4.5583 -5.3614 0.2921 14 7 3.2843 -7.1591 0.0328 15 6 4.3637 -7.9943 0.1629 16 1 5.3487 -7.5822 0.3259 17 6 4.1906 -9.3708 0.0849 18 7 2.9921 -9.8721 -0.1130 19 14 5.6615 -10.5086 0.2614 20 1 5.8447 -10.8625 1.6919 21 1 5.4290 -11.7444 -0.5285 22 1 6.8803 -9.8233 -0.2390 23 1 -0.3632 -0.1046 1.0224 24 1 -0.3634 -0.8330 -0.6017 25 1 -0.3633 0.9377 -0.4205 26 1 1.9089 2.1244 -0.0005 27 1 4.4583 -1.3152 -0.0078 28 1 3.6452 -3.3144 0.2329 29 1 1.5398 -5.1249 0.7486 30 1 1.8046 -5.0587 -1.0104 31 1 2.3998 -7.5292 -0.1140 32 1 2.8714 -10.8329 -0.1678 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343517670.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:43 Heat of formation + Delta-G solvation = -53.953078 kcal Electronic energy + Delta-G solvation = -19222.259277 eV Core-core repulsion = 15822.724978 eV Total energy + Delta-G solvation = -3399.534299 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.53729 -40.70303 -39.65547 -37.36061 -36.29045 -35.47560 -33.68293 -33.36700 -31.06047 -28.86443 -27.42414 -26.46417 -23.69583 -21.76520 -21.34494 -20.83940 -20.05552 -19.17218 -17.68932 -17.06119 -16.93067 -16.90441 -16.31060 -16.21682 -15.73969 -15.25705 -15.16409 -14.88479 -14.63428 -14.04425 -13.86821 -13.79343 -13.59947 -13.54261 -13.15970 -12.90772 -12.45333 -12.40559 -12.12366 -11.86198 -11.56994 -11.20537 -10.57264 -10.32427 -10.09186 -9.74887 -9.28451 -8.51097 -6.01076 0.27821 1.12379 1.36710 1.40859 1.43441 1.55147 1.63707 1.89877 2.17838 2.24889 2.39916 3.10001 3.16310 3.61113 3.89281 4.02732 4.20634 4.22670 4.39792 4.40939 4.41738 4.55200 4.74802 4.89427 5.16368 5.36141 5.38961 5.66061 5.91743 6.04115 6.38619 6.48824 6.99322 7.04059 7.43798 7.94395 8.65775 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.003186 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.183090 B = 8786.139189 C = 9816.355460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.404 5.404 3 C 0.057 3.943 4 C -0.144 4.144 5 Cl -0.046 7.046 6 C -0.128 4.128 7 C -0.062 4.062 8 C 0.590 3.410 9 O -0.575 6.575 10 N -0.697 5.697 11 C 0.125 3.875 12 C 0.432 3.568 13 O -0.624 6.624 14 N -0.558 5.558 15 C -0.337 4.337 16 H 0.086 0.914 17 C -0.009 4.009 18 N -0.916 5.916 19 Si 0.996 3.004 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.270 1.270 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.125 0.875 26 H 0.219 0.781 27 H 0.154 0.846 28 H 0.414 0.586 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.399 0.601 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.093 20.823 -0.305 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.076 5.076 3 C -0.082 4.082 4 C -0.176 4.176 5 Cl -0.018 7.018 6 C -0.155 4.155 7 C -0.176 4.176 8 C 0.379 3.621 9 O -0.457 6.457 10 N -0.350 5.350 11 C -0.002 4.002 12 C 0.219 3.781 13 O -0.512 6.512 14 N -0.193 5.193 15 C -0.467 4.467 16 H 0.104 0.896 17 C -0.210 4.210 18 N -0.556 5.556 19 Si 0.819 3.181 20 H -0.196 1.196 21 H -0.196 1.196 22 H -0.195 1.195 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.143 0.857 26 H 0.235 0.765 27 H 0.171 0.829 28 H 0.253 0.747 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.234 0.766 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.563 20.742 -0.285 21.477 hybrid contribution 0.806 -0.928 0.075 1.231 sum -4.758 19.814 -0.211 20.378 Atomic orbital electron populations 1.22514 0.73573 1.06422 1.04991 1.44027 1.08116 1.03989 1.51493 1.22329 0.88084 0.93209 1.04534 1.20018 0.89049 0.90940 1.17601 1.98324 1.40650 1.65036 1.97741 1.21454 0.95378 0.94299 1.04336 1.19705 0.90369 0.87600 1.19888 1.17026 0.85064 0.83887 0.76115 1.90760 1.16699 1.85299 1.52931 1.45349 1.12562 1.04648 1.72405 1.20821 0.94710 0.80283 1.04431 1.20396 0.90390 0.83530 0.83815 1.90487 1.27641 1.76004 1.57020 1.41816 1.10933 1.04455 1.62116 1.19743 0.89810 0.88101 1.49023 0.89584 1.26106 1.00724 0.98372 0.95805 1.69672 1.22907 1.14573 1.48403 0.84882 0.77438 0.77161 0.78610 1.19579 1.19647 1.19457 0.89630 0.89668 0.85675 0.76468 0.82866 0.74698 0.88266 0.88194 0.76625 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 10.49 127.77 1.34 2.28 16 2 N -0.40 -8.18 3.16 -534.18 -1.69 -9.87 16 3 C 0.06 0.94 11.35 83.48 0.95 1.88 16 4 C -0.14 -3.05 6.66 22.04 0.15 -2.90 16 5 Cl -0.05 -0.91 29.30 -2.72 -0.08 -0.99 16 6 C -0.13 -3.21 10.34 22.59 0.23 -2.97 16 7 C -0.06 -1.65 6.88 40.35 0.28 -1.38 16 8 C 0.59 18.63 7.77 86.44 0.67 19.30 16 9 O -0.57 -19.92 14.78 -4.35 -0.06 -19.98 16 10 N -0.70 -23.19 5.50 -470.82 -2.59 -25.78 16 11 C 0.12 4.46 6.16 85.63 0.53 4.98 16 12 C 0.43 19.71 7.85 87.66 0.69 20.40 16 13 O -0.62 -32.14 15.24 -3.07 -0.05 -32.18 16 14 N -0.56 -27.67 5.29 -306.98 -1.62 -29.30 16 15 C -0.34 -18.48 9.68 84.04 0.81 -17.67 16 16 H 0.09 4.97 7.16 -2.90 -0.02 4.95 16 17 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 18 N -0.92 -48.24 13.05 21.66 0.28 -47.95 16 19 Si 1.00 41.57 29.55 68.60 2.03 43.60 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.66 6.54 -2.39 -0.02 1.64 16 25 H 0.12 0.80 8.12 -2.39 -0.02 0.78 16 26 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 27 H 0.15 3.80 7.49 -2.91 -0.02 3.78 16 28 H 0.41 13.93 6.38 -92.71 -0.59 13.34 16 29 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 31 H 0.40 18.93 7.90 -92.71 -0.73 18.20 16 32 H 0.28 13.80 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -66.52 304.25 2.20 -64.32 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: -0.13 Total: 34.22 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 6.11 Total: 23.91 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -5.62 Total: -112.90 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.11 Total: -52.17 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -66.52 2.20 -64.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343517670.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.372 kcal (2) G-P(sol) polarization free energy of solvation -66.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds