Wall clock time and date at job start Wed Apr 15 2020 11:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00264 * 2 1 4 4 H 1.48495 * 109.47422 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46863 * 299.99541 * 3 2 1 6 6 H 1.48501 * 109.47343 * 59.99538 * 3 2 1 7 7 C 1.38813 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99862 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00218 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00053 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.85046 * 336.19310 * 10 9 7 12 12 C 1.53775 * 113.61656 * 107.50469 * 10 9 7 13 13 C 1.53779 * 87.08438 * 139.98199 * 12 10 9 14 14 H 1.09002 * 113.61731 * 89.11293 * 13 12 10 15 15 N 1.46500 * 113.68825 * 220.00754 * 13 12 10 16 16 C 1.34778 * 119.99919 * 254.05902 * 15 13 12 17 17 O 1.21582 * 119.99933 * 0.02562 * 16 15 13 18 18 C 1.47519 * 119.99941 * 180.02562 * 16 15 13 19 19 C 1.36786 * 126.92983 * 179.97438 * 18 16 15 20 20 C 1.41404 * 103.84048 * 179.97438 * 19 18 16 21 21 Cl 1.73601 * 126.72663 * 180.02562 * 20 19 18 22 22 N 1.30230 * 106.55080 * 359.97438 * 20 19 18 23 23 O 1.20889 * 111.95681 * 359.72492 * 22 20 19 24 24 C 1.53777 * 113.61534 * 205.00207 * 10 9 7 25 25 H 0.97006 * 119.99910 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99863 * 359.97438 * 9 7 2 27 27 H 1.08993 * 113.61636 * 25.42563 * 12 10 9 28 28 H 1.09008 * 113.61006 * 254.52805 * 12 10 9 29 29 H 0.96998 * 119.99853 * 74.06469 * 15 13 12 30 30 H 1.07998 * 128.07440 * 359.97438 * 19 18 16 31 31 H 1.08997 * 113.61941 * 105.46412 * 24 10 9 32 32 H 1.09005 * 113.61136 * 334.56577 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0658 -3.5641 -0.4031 12 6 1.9979 -4.4016 1.3457 13 6 1.8474 -5.6974 0.5314 14 1 2.7982 -6.1634 0.2725 15 7 0.8871 -6.6441 1.1038 16 6 1.3261 -7.7560 1.7263 17 8 2.5193 -7.9730 1.8132 18 6 0.3591 -8.7095 2.3022 19 6 0.6454 -9.8745 2.9593 20 6 -0.6258 -10.3936 3.2971 21 17 -0.9508 -11.8691 4.1521 22 7 -1.5049 -9.5475 2.8420 23 8 -0.9833 -8.6052 2.2929 24 6 1.2605 -4.8290 -0.5939 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0005 27 1 1.1193 -4.1561 1.9421 28 1 2.9257 -4.3494 1.9156 29 1 -0.0648 -6.4707 1.0347 30 1 1.6158 -10.2987 3.1707 31 1 1.5927 -5.1219 -1.5899 32 1 0.1801 -4.7004 -0.5279 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023008088.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:52 Heat of formation + Delta-G solvation = 38.069146 kcal Electronic energy + Delta-G solvation = -19131.772517 eV Core-core repulsion = 15736.228601 eV Total energy + Delta-G solvation = -3395.543916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.39806 -41.17092 -39.38793 -38.28395 -35.87692 -34.98622 -34.45685 -33.16703 -31.72325 -26.84992 -26.49060 -25.57129 -24.85214 -23.44397 -21.95651 -21.04866 -19.85093 -19.19181 -19.05163 -17.69982 -17.50384 -16.60295 -16.28008 -16.17674 -15.87882 -15.48195 -15.00153 -14.87843 -14.46004 -13.90866 -13.66637 -13.62785 -13.26880 -13.14233 -12.85100 -12.31979 -12.20333 -12.15695 -12.04506 -11.80402 -11.54753 -11.35698 -11.26459 -11.07820 -10.84973 -10.13668 -8.96117 -7.93349 -5.20861 -0.51460 0.24331 0.57588 1.29762 1.49757 1.50511 1.60044 1.75581 2.06030 2.58801 2.98623 3.38839 3.47848 3.64021 3.73473 3.77097 3.84400 4.00625 4.29562 4.34571 4.53442 4.71670 4.93084 4.93981 5.08327 5.20768 5.30899 5.52540 5.65246 6.21146 6.29679 6.63338 6.84999 7.36283 8.12943 8.34898 9.29999 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.043267 B = 0.002644 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.994538 B =10587.811926 C =10896.906157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.296 1.296 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.724 5.724 10 C 0.148 3.852 11 H 0.083 0.917 12 C -0.172 4.172 13 C 0.137 3.863 14 H 0.122 0.878 15 N -0.686 5.686 16 C 0.610 3.390 17 O -0.538 6.538 18 C -0.070 4.070 19 C -0.127 4.127 20 C 0.047 3.953 21 Cl 0.046 6.954 22 N -0.344 5.344 23 O 0.140 5.860 24 C -0.141 4.141 25 H 0.250 0.750 26 H 0.375 0.625 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.418 0.582 30 H 0.214 0.786 31 H 0.088 0.912 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.076 -23.398 4.880 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.224 1.224 7 C -0.372 4.372 8 H 0.096 0.904 9 N -0.362 5.362 10 C 0.038 3.962 11 H 0.101 0.899 12 C -0.213 4.213 13 C 0.032 3.968 14 H 0.140 0.860 15 N -0.336 5.336 16 C 0.393 3.607 17 O -0.415 6.415 18 C -0.136 4.136 19 C -0.150 4.150 20 C -0.136 4.136 21 Cl 0.074 6.926 22 N -0.044 5.044 23 O 0.062 5.938 24 C -0.181 4.181 25 H 0.059 0.941 26 H 0.208 0.792 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.256 0.744 30 H 0.231 0.769 31 H 0.106 0.894 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.276 -23.521 5.023 24.053 hybrid contribution 0.017 0.822 0.357 0.896 sum -0.260 -22.699 5.380 23.329 Atomic orbital electron populations 1.69805 1.06524 1.25921 1.59732 1.25525 0.96353 1.01007 1.03965 0.85134 0.78372 0.80145 0.76493 1.18999 1.22175 1.22386 1.19737 0.91608 0.85337 1.40558 0.90414 1.42533 1.05437 1.00865 1.87362 1.21698 0.95944 0.84047 0.94521 0.89881 1.24197 1.01643 0.95918 0.99590 1.22380 0.93506 0.86512 0.94409 0.86041 1.45882 1.11796 1.20816 1.55108 1.16495 0.85667 0.80332 0.78170 1.90881 1.15159 1.75889 1.59600 1.24122 0.84083 0.99585 1.05806 1.23024 0.99967 0.93580 0.98450 1.24257 0.90811 0.95044 1.03467 1.98437 1.95681 1.25528 1.72913 1.73869 1.22344 0.97521 1.10684 1.85070 1.18003 1.34651 1.56059 1.23704 1.01167 0.94737 0.98446 0.94092 0.79220 0.91038 0.92116 0.74431 0.76883 0.89362 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.85 13.06 21.65 0.28 -57.57 16 2 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 3 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.24 -12.83 9.97 84.03 0.84 -11.99 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.72 -34.23 5.40 -320.46 -1.73 -35.96 16 10 C 0.15 5.21 4.48 45.51 0.20 5.42 16 11 H 0.08 2.88 8.10 -2.39 -0.02 2.87 16 12 C -0.17 -5.30 7.68 31.12 0.24 -5.06 16 13 C 0.14 3.31 4.22 45.52 0.19 3.50 16 14 H 0.12 2.91 7.50 -2.39 -0.02 2.89 16 15 N -0.69 -14.25 5.36 -443.22 -2.38 -16.62 16 16 C 0.61 13.54 7.82 86.69 0.68 14.21 16 17 O -0.54 -14.92 16.53 -3.98 -0.07 -14.98 16 18 C -0.07 -1.33 7.29 24.38 0.18 -1.15 16 19 C -0.13 -2.11 10.96 22.71 0.25 -1.86 16 20 C 0.05 0.85 7.97 85.71 0.68 1.53 16 21 Cl 0.05 0.68 29.33 -2.72 -0.08 0.60 16 22 N -0.34 -7.23 12.05 -51.02 -0.61 -7.84 16 23 O 0.14 2.73 11.04 65.78 0.73 3.45 16 24 C -0.14 -3.72 7.58 31.12 0.24 -3.48 16 25 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 26 H 0.38 18.99 7.92 -92.71 -0.73 18.26 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.42 7.15 8.54 -92.71 -0.79 6.36 16 30 H 0.21 2.57 8.06 -2.91 -0.02 2.55 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.32 8.09 -2.38 -0.02 2.30 16 Total: -1.00 -64.16 305.88 1.79 -62.37 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.34 Total: 22.01 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 3.96 Total: -2.68 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -4.44 Total: -118.00 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.66 Total: -11.53 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 17 Polarization: 0.68 SS G_CDS: -0.08 Total: 0.60 kcal Total: -64.16 1.79 -62.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023008088.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.434 kcal (2) G-P(sol) polarization free energy of solvation -64.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds