Wall clock time and date at job start Wed Apr 15 2020 11:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48499 * 109.46896 * 270.00102 * 3 2 1 5 5 H 1.48506 * 109.46723 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47378 * 149.99559 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.46506 * 267.40214 * 12 9 7 14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7 15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9 16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12 17 17 O 1.21585 * 120.00022 * 359.97438 * 16 15 14 18 18 C 1.47514 * 119.99887 * 180.02562 * 16 15 14 19 19 C 1.36786 * 126.93003 * 179.71029 * 18 16 15 20 20 C 1.41405 * 103.84027 * 179.87053 * 19 18 16 21 21 Cl 1.73605 * 126.72833 * 180.13460 * 20 19 18 22 22 N 1.30229 * 106.54873 * 0.39463 * 20 19 18 23 23 O 1.20884 * 111.96012 * 359.73957 * 22 20 19 24 24 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 25 25 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 26 26 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 27 27 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 28 28 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 29 29 H 1.09002 * 109.47370 * 45.49563 * 14 12 9 30 30 H 1.09003 * 109.46961 * 165.49707 * 14 12 9 31 31 H 0.96999 * 120.00354 * 0.02562 * 15 14 12 32 32 H 1.08003 * 128.08138 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7403 -4.2477 -0.9983 14 6 2.9022 -4.1398 0.8615 15 7 4.1160 -3.6902 0.1751 16 6 5.3216 -3.8729 0.7492 17 8 5.4019 -4.4105 1.8368 18 6 6.5437 -3.4197 0.0585 19 6 7.8306 -3.5274 0.5094 20 6 8.6011 -2.9478 -0.5249 21 17 10.3285 -2.7785 -0.5626 22 7 7.7606 -2.5608 -1.4413 23 8 6.6169 -2.8114 -1.1405 24 1 -0.4849 0.8401 -0.0004 25 1 -0.7200 -2.1579 0.6255 26 1 -0.4978 -2.9554 -0.9903 27 1 -0.1719 -4.9834 0.3522 28 1 0.3904 -4.0224 1.7929 29 1 2.8169 -3.6293 1.8207 30 1 2.9555 -5.2160 1.0261 31 1 4.0519 -3.2609 -0.6924 32 1 8.1774 -3.9565 1.4379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038946423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:55 Heat of formation + Delta-G solvation = 85.542907 kcal Electronic energy + Delta-G solvation = -19895.571331 eV Core-core repulsion = 16502.086032 eV Total energy + Delta-G solvation = -3393.485299 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.36796 -39.64570 -38.18393 -37.41303 -34.56184 -33.82192 -32.39919 -32.16050 -28.27304 -27.84478 -24.27267 -23.83132 -23.52956 -22.00227 -20.89134 -19.52210 -18.76306 -18.14257 -16.80571 -16.40918 -15.99988 -15.46975 -15.30190 -14.67807 -14.28571 -13.98169 -13.79420 -13.42270 -13.08969 -12.99828 -12.65089 -12.05025 -11.61043 -11.36627 -11.19658 -11.06194 -10.80493 -10.66958 -10.40510 -10.32981 -10.03446 -9.95488 -9.88730 -9.37658 -8.86198 -8.85582 -6.96331 -5.82277 -3.15436 0.54993 1.14386 1.55695 2.40200 2.95696 3.23181 3.36036 3.41694 3.42780 4.00482 4.38465 4.45136 4.72302 4.83327 5.12081 5.31368 5.40577 5.48343 5.59563 5.81899 5.94498 6.20440 6.29524 6.46859 6.54858 6.67406 7.16441 7.31903 7.38013 7.52563 7.68698 7.91647 8.05792 8.97014 9.64864 10.56073 11.34677 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.004695 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.112110 B = 5962.908811 C = 7204.542862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.218 4.218 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.160 4.160 12 C 0.126 3.874 13 H 0.051 0.949 14 C 0.119 3.881 15 N -0.691 5.691 16 C 0.599 3.401 17 O -0.518 6.518 18 C -0.057 4.057 19 C -0.145 4.145 20 C 0.050 3.950 21 Cl 0.029 6.971 22 N -0.328 5.328 23 O 0.141 5.859 24 H 0.254 0.746 25 H 0.072 0.928 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.412 0.588 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.479 -9.449 -0.361 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.345 4.345 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.199 4.199 12 C 0.018 3.982 13 H 0.069 0.931 14 C -0.005 4.005 15 N -0.340 5.340 16 C 0.380 3.620 17 O -0.395 6.395 18 C -0.123 4.123 19 C -0.168 4.168 20 C -0.133 4.133 21 Cl 0.057 6.943 22 N -0.028 5.028 23 O 0.064 5.936 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.248 0.752 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 12.859 -8.823 -0.754 15.614 hybrid contribution 0.883 0.962 0.071 1.308 sum 13.742 -7.861 -0.683 15.847 Atomic orbital electron populations 1.69823 1.04988 1.25388 1.56083 1.24760 0.95617 0.97430 1.02271 0.86206 0.78720 0.83699 0.77677 1.21500 1.21563 1.20643 1.18827 0.89969 0.81326 1.44400 0.90210 1.45684 1.02659 0.98470 1.85927 1.22031 0.88653 0.90170 0.96573 1.23671 0.96660 0.99161 1.00392 1.22455 0.91774 0.88012 0.95986 0.93139 1.22040 0.82336 0.98728 0.97416 1.45942 1.05445 1.59009 1.23590 1.16453 0.81061 0.79903 0.84543 1.90866 1.85538 1.43774 1.19273 1.24439 0.97613 1.02057 0.88188 1.22695 0.89824 1.02834 1.01447 1.24043 0.90330 1.04734 0.94208 1.98416 1.01227 1.96535 1.98169 1.73882 0.89649 1.17296 1.21944 1.85106 1.21628 1.56030 1.30876 0.93609 0.90931 0.95623 0.92239 0.90110 0.90294 0.91420 0.75243 0.78930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.30 11.51 55.49 0.64 -25.66 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 3 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -5.64 10.55 -15.06 -0.16 -5.80 16 8 H 0.08 1.98 7.51 -52.49 -0.39 1.58 16 9 N -0.60 -13.94 3.65 -176.98 -0.65 -14.59 16 10 C 0.15 3.30 7.39 -8.50 -0.06 3.24 16 11 C -0.16 -2.69 8.03 -26.21 -0.21 -2.90 16 12 C 0.13 2.23 4.10 -72.39 -0.30 1.93 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 14 C 0.12 1.92 5.52 -4.04 -0.02 1.89 16 15 N -0.69 -10.72 5.33 -61.35 -0.33 -11.05 16 16 C 0.60 9.22 7.82 -12.48 -0.10 9.12 16 17 O -0.52 -9.09 16.91 5.29 0.09 -9.00 16 18 C -0.06 -0.78 7.29 -36.33 -0.26 -1.04 16 19 C -0.14 -1.73 10.96 -38.90 -0.43 -2.16 16 20 C 0.05 0.62 7.97 -17.03 -0.14 0.48 16 21 Cl 0.03 0.29 29.33 -51.86 -1.52 -1.23 16 22 N -0.33 -4.65 12.05 32.82 0.40 -4.25 16 23 O 0.14 1.98 11.04 15.54 0.17 2.15 16 24 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.07 1.79 7.13 -51.93 -0.37 1.42 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.41 6.24 8.21 -40.82 -0.33 5.90 16 32 H 0.19 1.87 8.06 -52.48 -0.42 1.44 16 LS Contribution 303.87 15.07 4.58 4.58 Total: -1.00 -29.90 303.87 -6.61 -36.51 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -3.19 Total: 1.26 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -1.77 Total: 4.57 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.06 Total: -55.55 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: 0.26 Total: -6.85 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.52 Total: -1.23 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.90 -6.61 -36.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038946423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.055 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds