Wall clock time and date at job start Wed Apr 15 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48499 * 109.46896 * 270.00102 * 3 2 1 5 5 H 1.48506 * 109.46723 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47378 * 149.99559 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.46506 * 267.40214 * 12 9 7 14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7 15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9 16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12 17 17 O 1.21585 * 120.00022 * 359.97438 * 16 15 14 18 18 C 1.47514 * 119.99887 * 180.02562 * 16 15 14 19 19 C 1.36786 * 126.93003 * 179.71029 * 18 16 15 20 20 C 1.41405 * 103.84027 * 179.87053 * 19 18 16 21 21 Cl 1.73605 * 126.72833 * 180.13460 * 20 19 18 22 22 N 1.30229 * 106.54873 * 0.39463 * 20 19 18 23 23 O 1.20884 * 111.96012 * 359.73957 * 22 20 19 24 24 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 25 25 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 26 26 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 27 27 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 28 28 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 29 29 H 1.09002 * 109.47370 * 45.49563 * 14 12 9 30 30 H 1.09003 * 109.46961 * 165.49707 * 14 12 9 31 31 H 0.96999 * 120.00354 * 0.02562 * 15 14 12 32 32 H 1.08003 * 128.08138 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7403 -4.2477 -0.9983 14 6 2.9022 -4.1398 0.8615 15 7 4.1160 -3.6902 0.1751 16 6 5.3216 -3.8729 0.7492 17 8 5.4019 -4.4105 1.8368 18 6 6.5437 -3.4197 0.0585 19 6 7.8306 -3.5274 0.5094 20 6 8.6011 -2.9478 -0.5249 21 17 10.3285 -2.7785 -0.5626 22 7 7.7606 -2.5608 -1.4413 23 8 6.6169 -2.8114 -1.1405 24 1 -0.4849 0.8401 -0.0004 25 1 -0.7200 -2.1579 0.6255 26 1 -0.4978 -2.9554 -0.9903 27 1 -0.1719 -4.9834 0.3522 28 1 0.3904 -4.0224 1.7929 29 1 2.8169 -3.6293 1.8207 30 1 2.9555 -5.2160 1.0261 31 1 4.0519 -3.2609 -0.6924 32 1 8.1774 -3.9565 1.4379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038946423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:54 Heat of formation + Delta-G solvation = 65.290608 kcal Electronic energy + Delta-G solvation = -19896.449536 eV Core-core repulsion = 16502.086032 eV Total energy + Delta-G solvation = -3394.363505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.39232 -40.93972 -39.72013 -38.30032 -35.82624 -34.87647 -34.23632 -33.34423 -29.97004 -29.36492 -25.48634 -25.35431 -24.84069 -23.39189 -22.04715 -21.06432 -20.07814 -19.18751 -18.47825 -17.52643 -17.27173 -17.08081 -16.47407 -16.20191 -15.75306 -15.42298 -14.92784 -14.88249 -14.61032 -13.92024 -13.64986 -13.61071 -13.32677 -12.96607 -12.67752 -12.56969 -12.33914 -12.26984 -11.89041 -11.66631 -11.54382 -11.27434 -11.09547 -10.98453 -10.81074 -10.16091 -8.86042 -7.85830 -5.16541 -0.51692 0.21637 0.57498 1.31618 1.45058 1.45664 1.52617 1.78305 2.08420 2.47968 2.97505 3.36745 3.46089 3.48405 3.69970 3.76773 3.98086 4.14039 4.39900 4.52381 4.66845 4.73685 4.90483 5.11836 5.12911 5.24734 5.37397 5.62848 5.78852 6.00278 6.18989 6.61394 6.83932 6.96617 7.67025 8.66334 9.31822 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.004695 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.112110 B = 5962.908811 C = 7204.542862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.961 3.039 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.273 1.273 7 C -0.204 4.204 8 H 0.088 0.912 9 N -0.630 5.630 10 C 0.141 3.859 11 C -0.132 4.132 12 C 0.131 3.869 13 H 0.072 0.928 14 C 0.127 3.873 15 N -0.692 5.692 16 C 0.605 3.395 17 O -0.540 6.540 18 C -0.070 4.070 19 C -0.127 4.127 20 C 0.050 3.950 21 Cl 0.049 6.951 22 N -0.345 5.345 23 O 0.132 5.868 24 H 0.245 0.755 25 H 0.035 0.965 26 H 0.021 0.979 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.413 0.587 32 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.236 -11.015 -0.266 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.791 3.209 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.198 1.198 7 C -0.333 4.333 8 H 0.105 0.895 9 N -0.356 5.356 10 C 0.015 3.985 11 C -0.170 4.170 12 C 0.025 3.975 13 H 0.089 0.911 14 C 0.003 3.997 15 N -0.341 5.341 16 C 0.388 3.612 17 O -0.419 6.419 18 C -0.136 4.136 19 C -0.150 4.150 20 C -0.133 4.133 21 Cl 0.077 6.923 22 N -0.047 5.047 23 O 0.056 5.944 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.249 0.751 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 14.639 -10.427 -0.667 17.985 hybrid contribution 0.428 1.361 0.025 1.427 sum 15.067 -9.066 -0.641 17.596 Atomic orbital electron populations 1.69994 1.06200 1.25099 1.58888 1.25443 0.96309 1.00261 1.04027 0.85331 0.77736 0.80539 0.77327 1.21576 1.22559 1.19803 1.19186 0.90548 0.82495 1.41063 0.89462 1.46010 1.03712 1.00060 1.85851 1.22061 0.87785 0.92319 0.96353 1.23477 0.95521 0.97912 1.00104 1.22616 0.93016 0.84624 0.97237 0.91057 1.21867 0.81966 1.00086 0.95797 1.45925 1.05487 1.59093 1.23620 1.16486 0.81291 0.79249 0.84155 1.90853 1.85958 1.44849 1.20207 1.24190 0.97509 1.03287 0.88585 1.23018 0.88952 1.01299 1.01750 1.24262 0.91316 1.03922 0.93791 1.98429 0.99364 1.96380 1.98090 1.73867 0.89948 1.18086 1.22793 1.85089 1.21754 1.56461 1.31073 0.94640 0.94684 0.96088 0.88151 0.89890 0.92604 0.88586 0.75055 0.76638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.33 11.51 21.65 0.25 -56.08 16 2 C -0.07 -3.73 5.50 84.86 0.47 -3.27 16 3 Si 0.96 45.38 29.55 68.60 2.03 47.40 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.20 -10.56 10.55 84.03 0.89 -9.68 16 8 H 0.09 4.26 7.51 -2.91 -0.02 4.24 16 9 N -0.63 -28.87 3.65 -713.85 -2.61 -31.48 16 10 C 0.14 6.12 7.39 83.18 0.61 6.73 16 11 C -0.13 -4.10 8.03 30.94 0.25 -3.85 16 12 C 0.13 4.34 4.10 41.80 0.17 4.51 16 13 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 14 C 0.13 3.80 5.52 86.38 0.48 4.28 16 15 N -0.69 -20.24 5.33 -466.28 -2.48 -22.72 16 16 C 0.61 17.60 7.82 86.69 0.68 18.27 16 17 O -0.54 -17.98 16.91 -3.98 -0.07 -18.05 16 18 C -0.07 -1.79 7.29 24.38 0.18 -1.61 16 19 C -0.13 -2.75 10.96 22.71 0.25 -2.50 16 20 C 0.05 1.14 7.97 85.71 0.68 1.82 16 21 Cl 0.05 0.90 29.33 -2.72 -0.08 0.82 16 22 N -0.35 -9.27 12.05 -51.02 -0.61 -9.88 16 23 O 0.13 3.55 11.04 65.77 0.73 4.27 16 24 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 25 H 0.03 1.77 7.13 -2.39 -0.02 1.76 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.41 11.88 8.21 -92.71 -0.76 11.12 16 32 H 0.22 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -64.92 303.87 2.21 -62.71 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.41 Total: 8.29 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 4.65 Total: 14.72 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -5.46 Total: -120.17 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.66 Total: -13.77 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 17 Polarization: 0.90 SS G_CDS: -0.08 Total: 0.82 kcal Total: -64.92 2.21 -62.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038946423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.002 kcal (2) G-P(sol) polarization free energy of solvation -64.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds