Wall clock time and date at job start Wed Apr 15 2020 11:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46906 * 2 1 4 4 C 1.52999 * 109.47386 * 239.99648 * 2 1 3 5 5 O 1.42902 * 109.46802 * 305.00046 * 4 2 1 6 6 N 1.46499 * 109.47056 * 119.99172 * 2 1 3 7 7 S 1.65600 * 120.00479 * 266.35042 * 6 2 1 8 8 O 1.42098 * 106.40133 * 177.96949 * 7 6 2 9 9 O 1.42096 * 106.40527 * 310.89644 * 7 6 2 10 10 C 1.76208 * 107.21323 * 64.43574 * 7 6 2 11 11 C 1.37639 * 120.12518 * 244.86052 * 10 7 6 12 12 C 1.38613 * 120.24861 * 180.02562 * 11 10 7 13 13 C 1.38650 * 120.50056 * 359.97438 * 12 11 10 14 14 C 1.37600 * 120.25182 * 0.02562 * 13 12 11 15 15 C 1.40693 * 120.12770 * 64.58767 * 10 7 6 16 16 C 1.41391 * 120.24900 * 359.97438 * 15 10 7 17 17 H 1.08007 * 119.99687 * 331.36734 * 16 15 10 18 18 C 1.39943 * 120.00152 * 151.35829 * 16 15 10 19 19 N 1.30816 * 120.00378 * 348.12685 * 18 16 15 20 20 Si 1.86802 * 119.99862 * 168.12451 * 18 16 15 21 21 H 1.48496 * 109.47419 * 90.00185 * 20 18 16 22 22 H 1.48501 * 109.47166 * 210.00471 * 20 18 16 23 23 H 1.48509 * 109.46979 * 330.00031 * 20 18 16 24 24 H 1.09005 * 109.47062 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47403 * 300.00090 * 1 2 3 26 26 H 1.08999 * 109.47593 * 60.00555 * 1 2 3 27 27 H 1.08997 * 109.46846 * 64.99944 * 4 2 1 28 28 H 1.08997 * 109.47120 * 184.99819 * 4 2 1 29 29 H 0.96706 * 113.99234 * 180.02562 * 5 4 2 30 30 H 0.97010 * 119.99652 * 86.35553 * 6 2 1 31 31 H 1.08004 * 119.87364 * 0.02562 * 11 10 7 32 32 H 1.07999 * 119.74903 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.87821 * 179.97438 * 13 12 11 34 34 H 1.07997 * 120.13378 * 179.97438 * 14 13 12 35 35 H 0.96997 * 120.00265 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3092 6 7 2.0183 -0.6904 1.1963 7 16 2.3804 0.1740 2.5615 8 8 2.7750 -0.7740 3.5438 9 8 3.2068 1.2527 2.1461 10 6 0.8779 0.8917 3.1381 11 6 0.7243 2.2594 3.1467 12 6 -0.4563 2.8267 3.6002 13 6 -1.4950 2.0256 4.0493 14 6 -1.3636 0.6558 4.0497 15 6 -0.1716 0.0686 3.5861 16 6 -0.0276 -1.3379 3.5759 17 1 0.6185 -1.8094 2.8501 18 6 -0.7221 -2.1191 4.5064 19 7 -1.3157 -1.5509 5.5243 20 14 -0.8017 -3.9734 4.2949 21 1 0.3463 -4.6015 4.9968 22 1 -2.0725 -4.4832 4.8699 23 1 -0.7424 -4.3098 2.8496 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.7517 -0.1584 -2.1369 28 1 3.1263 -0.7995 -1.2055 29 1 1.7506 -2.5465 -2.0775 30 1 2.1296 -1.6541 1.1886 31 1 1.5268 2.8931 2.7988 32 1 -0.5679 3.9009 3.6038 33 1 -2.4103 2.4782 4.4008 34 1 -2.1737 0.0336 4.4002 35 1 -1.7974 -2.0923 6.1690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585708270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:57 Heat of formation + Delta-G solvation = -114.499326 kcal Electronic energy + Delta-G solvation = -21568.817767 eV Core-core repulsion = 18272.242036 eV Total energy + Delta-G solvation = -3296.575732 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -37.74300 -37.48494 -36.17416 -34.79389 -34.63242 -33.84291 -30.20501 -29.67056 -29.37150 -26.11095 -25.49616 -21.61615 -21.18528 -20.81101 -18.77129 -17.69816 -17.41333 -16.61110 -16.21361 -15.58248 -15.33399 -14.44694 -14.38784 -14.16247 -13.45730 -13.21168 -13.13175 -12.82368 -12.71337 -12.28934 -11.79929 -11.57132 -11.40062 -11.22201 -11.14956 -11.05253 -10.98730 -10.92382 -10.73510 -10.49511 -10.38752 -9.95966 -9.87214 -9.42886 -9.38817 -8.72329 -7.98502 -7.56616 -6.99510 -4.71708 1.59001 2.37568 2.76788 3.00154 3.05329 3.15855 3.81881 3.95016 4.36001 4.44995 4.78420 5.07827 5.20410 5.34764 5.41304 5.64060 5.70310 5.86279 5.98512 6.08264 6.26494 6.37533 6.42961 6.61191 6.81672 6.91443 6.98871 7.12231 7.34536 7.52533 7.62119 7.67719 7.75410 7.84119 7.93595 8.33124 8.54562 8.68590 9.93318 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.013228 B = 0.009472 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.185815 B = 2955.368305 C = 3897.534664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.156 3.844 3 H 0.096 0.904 4 C 0.073 3.927 5 O -0.564 6.564 6 N -1.113 6.113 7 S 2.698 3.302 8 O -0.966 6.966 9 O -1.002 7.002 10 C -0.773 4.773 11 C -0.003 4.003 12 C -0.251 4.251 13 C -0.077 4.077 14 C -0.158 4.158 15 C 0.190 3.810 16 C -0.443 4.443 17 H 0.088 0.912 18 C 0.081 3.919 19 N -0.777 5.777 20 Si 0.914 3.086 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.254 1.254 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.374 0.626 30 H 0.415 0.585 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.100 -0.822 -10.346 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.049 3.951 3 H 0.113 0.887 4 C -0.006 4.006 5 O -0.368 6.368 6 N -0.870 5.870 7 S 2.796 3.204 8 O -0.956 6.956 9 O -0.992 6.992 10 C -0.869 4.869 11 C -0.023 4.023 12 C -0.271 4.271 13 C -0.096 4.096 14 C -0.178 4.178 15 C 0.185 3.815 16 C -0.471 4.471 17 H 0.106 0.894 18 C -0.141 4.141 19 N -0.400 5.400 20 Si 0.737 3.263 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.178 1.178 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.220 0.780 30 H 0.249 0.751 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.142 0.858 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.543 -0.414 -9.217 9.355 hybrid contribution -0.624 -1.091 -0.412 1.323 sum 0.920 -1.504 -9.629 9.790 Atomic orbital electron populations 1.22248 0.94616 1.03618 1.02313 1.20718 0.95236 0.95404 0.83789 0.88660 1.22457 0.96692 0.84172 0.97313 1.86560 1.72781 1.27245 1.50232 1.55664 1.84025 1.19938 1.27365 1.01110 0.74456 0.72738 0.72107 1.93541 1.82576 1.62040 1.57461 1.93437 1.66787 1.56069 1.82899 1.29840 1.21036 1.02635 1.33360 1.20236 0.95926 0.92723 0.93452 1.20464 0.96238 0.97465 1.12963 1.20886 0.96932 0.94538 0.97270 1.21514 0.98605 0.93353 1.04339 1.16952 0.88496 0.91858 0.84202 1.19873 1.22362 0.91234 1.13610 0.89366 1.25947 0.92333 1.02306 0.93466 1.69779 1.23297 1.38962 1.08005 0.86192 0.78739 0.80858 0.80532 1.18737 1.19889 1.17793 0.91067 0.90779 0.92865 0.92868 0.93146 0.77994 0.75122 0.87538 0.88852 0.88935 0.85806 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.32 37.16 0.35 -2.38 16 2 C 0.16 2.41 3.30 -67.93 -0.22 2.19 16 3 H 0.10 1.44 7.53 -51.92 -0.39 1.05 16 4 C 0.07 0.86 6.83 37.16 0.25 1.12 16 5 O -0.56 -6.77 12.49 -35.23 -0.44 -7.21 16 6 N -1.11 -20.11 4.57 -4.89 -0.02 -20.13 16 7 S 2.70 59.73 4.94 -107.50 -0.53 59.20 16 8 O -0.97 -24.48 16.61 -57.17 -0.95 -25.42 16 9 O -1.00 -22.79 16.33 -57.17 -0.93 -23.73 16 10 C -0.77 -18.41 4.74 -38.87 -0.18 -18.59 16 11 C 0.00 -0.08 9.53 -39.66 -0.38 -0.46 16 12 C -0.25 -5.47 10.05 -39.29 -0.39 -5.86 16 13 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 14 C -0.16 -3.91 8.66 -38.87 -0.34 -4.24 16 15 C 0.19 4.80 5.09 -106.82 -0.54 4.25 16 16 C -0.44 -11.17 7.65 -37.74 -0.29 -11.46 16 17 H 0.09 2.11 5.74 -52.48 -0.30 1.81 16 18 C 0.08 1.96 5.23 -17.35 -0.09 1.87 16 19 N -0.78 -19.29 10.88 55.55 0.60 -18.68 16 20 Si 0.91 18.36 29.58 -169.99 -5.03 13.34 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.25 -4.98 7.11 56.52 0.40 -4.58 16 24 H 0.07 1.21 7.56 -51.93 -0.39 0.82 16 25 H 0.07 1.38 6.39 -51.93 -0.33 1.05 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.37 2.63 9.12 45.56 0.42 3.04 16 30 H 0.41 7.10 8.31 -34.47 -0.29 6.82 16 31 H 0.11 2.22 7.33 -52.48 -0.38 1.84 16 32 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.12 3.10 6.23 -52.49 -0.33 2.77 16 35 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 304.20 15.07 4.58 4.58 Total: -1.00 -31.42 304.20 -8.20 -39.62 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -3.25 Total: 14.12 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: -2.24 Total: -35.68 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.58 Total: -38.82 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -2.32 Total: -56.36 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.34 kcal Atomic # 16 Polarization: 59.73 SS G_CDS: -0.53 Total: 59.20 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.42 -8.20 -39.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585708270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.877 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds