Wall clock time and date at job start Wed Apr 15 2020 11:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46906 * 2 1 4 4 C 1.52999 * 109.47386 * 239.99648 * 2 1 3 5 5 O 1.42902 * 109.46802 * 305.00046 * 4 2 1 6 6 N 1.46499 * 109.47056 * 119.99172 * 2 1 3 7 7 S 1.65600 * 120.00479 * 266.35042 * 6 2 1 8 8 O 1.42098 * 106.40133 * 177.96949 * 7 6 2 9 9 O 1.42096 * 106.40527 * 310.89644 * 7 6 2 10 10 C 1.76208 * 107.21323 * 64.43574 * 7 6 2 11 11 C 1.37639 * 120.12518 * 244.86052 * 10 7 6 12 12 C 1.38613 * 120.24861 * 180.02562 * 11 10 7 13 13 C 1.38650 * 120.50056 * 359.97438 * 12 11 10 14 14 C 1.37600 * 120.25182 * 0.02562 * 13 12 11 15 15 C 1.40693 * 120.12770 * 64.58767 * 10 7 6 16 16 C 1.41391 * 120.24900 * 359.97438 * 15 10 7 17 17 H 1.08007 * 119.99687 * 331.36734 * 16 15 10 18 18 C 1.39943 * 120.00152 * 151.35829 * 16 15 10 19 19 N 1.30816 * 120.00378 * 348.12685 * 18 16 15 20 20 Si 1.86802 * 119.99862 * 168.12451 * 18 16 15 21 21 H 1.48496 * 109.47419 * 90.00185 * 20 18 16 22 22 H 1.48501 * 109.47166 * 210.00471 * 20 18 16 23 23 H 1.48509 * 109.46979 * 330.00031 * 20 18 16 24 24 H 1.09005 * 109.47062 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47403 * 300.00090 * 1 2 3 26 26 H 1.08999 * 109.47593 * 60.00555 * 1 2 3 27 27 H 1.08997 * 109.46846 * 64.99944 * 4 2 1 28 28 H 1.08997 * 109.47120 * 184.99819 * 4 2 1 29 29 H 0.96706 * 113.99234 * 180.02562 * 5 4 2 30 30 H 0.97010 * 119.99652 * 86.35553 * 6 2 1 31 31 H 1.08004 * 119.87364 * 0.02562 * 11 10 7 32 32 H 1.07999 * 119.74903 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.87821 * 179.97438 * 13 12 11 34 34 H 1.07997 * 120.13378 * 179.97438 * 14 13 12 35 35 H 0.96997 * 120.00265 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3092 6 7 2.0183 -0.6904 1.1963 7 16 2.3804 0.1740 2.5615 8 8 2.7750 -0.7740 3.5438 9 8 3.2068 1.2527 2.1461 10 6 0.8779 0.8917 3.1381 11 6 0.7243 2.2594 3.1467 12 6 -0.4563 2.8267 3.6002 13 6 -1.4950 2.0256 4.0493 14 6 -1.3636 0.6558 4.0497 15 6 -0.1716 0.0686 3.5861 16 6 -0.0276 -1.3379 3.5759 17 1 0.6185 -1.8094 2.8501 18 6 -0.7221 -2.1191 4.5064 19 7 -1.3157 -1.5509 5.5243 20 14 -0.8017 -3.9734 4.2949 21 1 0.3463 -4.6015 4.9968 22 1 -2.0725 -4.4832 4.8699 23 1 -0.7424 -4.3098 2.8496 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.7517 -0.1584 -2.1369 28 1 3.1263 -0.7995 -1.2055 29 1 1.7506 -2.5465 -2.0775 30 1 2.1296 -1.6541 1.1886 31 1 1.5268 2.8931 2.7988 32 1 -0.5679 3.9009 3.6038 33 1 -2.4103 2.4782 4.4008 34 1 -2.1737 0.0336 4.4002 35 1 -1.7974 -2.0923 6.1690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585708270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:56 Heat of formation + Delta-G solvation = -139.218820 kcal Electronic energy + Delta-G solvation = -21569.889685 eV Core-core repulsion = 18272.242036 eV Total energy + Delta-G solvation = -3297.647649 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.39828 -38.70439 -37.97953 -36.65357 -35.83954 -35.60176 -32.00875 -31.37337 -30.82274 -27.32755 -27.16877 -23.40176 -22.94528 -22.08757 -20.37028 -19.49546 -18.75831 -17.95144 -17.87683 -17.16075 -16.97702 -16.05040 -15.96270 -15.35309 -15.09708 -14.88272 -14.59522 -14.45323 -14.15912 -13.76557 -13.30864 -13.14892 -13.00980 -12.95999 -12.85298 -12.82884 -12.77564 -12.49513 -12.27591 -12.13076 -11.70692 -11.63414 -11.17727 -11.13820 -10.80421 -10.23069 -9.78374 -9.39558 -8.78087 -6.58418 -0.13223 0.56357 0.99885 1.36062 1.47738 1.52909 2.16425 2.35884 2.65267 3.01549 3.47904 3.51351 3.87987 3.95461 4.23841 4.35500 4.47853 4.52401 4.53467 4.70661 4.74814 4.86123 5.00361 5.07314 5.17514 5.29745 5.36581 5.54806 5.60835 5.73570 5.85485 6.03309 6.11508 6.27546 6.50741 6.70580 6.86527 7.05529 8.17867 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.013228 B = 0.009472 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.185815 B = 2955.368305 C = 3897.534664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.100 0.900 4 C 0.079 3.921 5 O -0.585 6.585 6 N -1.102 6.102 7 S 2.716 3.284 8 O -1.003 7.003 9 O -1.009 7.009 10 C -0.786 4.786 11 C -0.015 4.015 12 C -0.249 4.249 13 C -0.076 4.076 14 C -0.187 4.187 15 C 0.170 3.830 16 C -0.473 4.473 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.809 5.809 20 Si 0.973 3.027 21 H -0.267 1.267 22 H -0.259 1.259 23 H -0.247 1.247 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.396 0.604 30 H 0.420 0.580 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.155 -0.690 -12.037 12.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.118 0.882 4 C 0.000 4.000 5 O -0.393 6.393 6 N -0.862 5.862 7 S 2.813 3.187 8 O -0.994 6.994 9 O -0.999 6.999 10 C -0.880 4.880 11 C -0.035 4.035 12 C -0.269 4.269 13 C -0.094 4.094 14 C -0.207 4.207 15 C 0.166 3.834 16 C -0.501 4.501 17 H 0.109 0.891 18 C -0.179 4.179 19 N -0.433 5.433 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.183 1.183 23 H -0.170 1.170 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.246 0.754 30 H 0.255 0.745 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.587 -0.269 -10.921 11.039 hybrid contribution -0.631 -1.004 0.045 1.187 sum 0.956 -1.273 -10.876 10.992 Atomic orbital electron populations 1.22169 0.95237 1.02681 1.02132 1.21075 0.94816 0.96177 0.84283 0.88232 1.22388 0.97101 0.84334 0.96170 1.86502 1.73199 1.27590 1.52004 1.55332 1.83890 1.20032 1.26980 1.00432 0.73808 0.72274 0.72228 1.93484 1.83183 1.62998 1.59709 1.93417 1.66882 1.56521 1.83069 1.30111 1.21216 1.03362 1.33326 1.20565 0.96917 0.92579 0.93455 1.20864 0.95485 0.99167 1.11420 1.21226 0.98251 0.93821 0.96150 1.21564 0.98537 0.94479 1.06134 1.17200 0.89096 0.92414 0.84694 1.20119 1.23651 0.91779 1.14567 0.89143 1.26768 0.91765 1.06420 0.92919 1.69816 1.24140 1.40615 1.08726 0.85326 0.79038 0.75610 0.80776 1.19186 1.18253 1.17019 0.92329 0.93886 0.90049 0.89671 0.92047 0.75398 0.74498 0.85933 0.85546 0.86171 0.86999 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 9.32 71.98 0.67 -4.43 16 2 C 0.14 4.19 3.30 44.99 0.15 4.34 16 3 H 0.10 2.82 7.53 -2.38 -0.02 2.80 16 4 C 0.08 1.64 6.83 71.98 0.49 2.13 16 5 O -0.58 -12.53 12.49 -148.98 -1.86 -14.39 16 6 N -1.10 -39.20 4.57 -169.39 -0.77 -39.98 16 7 S 2.72 120.45 4.94 -56.49 -0.28 120.17 16 8 O -1.00 -51.75 16.61 -128.00 -2.13 -53.87 16 9 O -1.01 -45.19 16.33 -128.00 -2.09 -47.28 16 10 C -0.79 -37.66 4.74 22.73 0.11 -37.55 16 11 C -0.02 -0.69 9.53 22.22 0.21 -0.47 16 12 C -0.25 -10.44 10.05 22.46 0.23 -10.22 16 13 C -0.08 -3.34 10.02 22.22 0.22 -3.12 16 14 C -0.19 -9.41 8.66 22.73 0.20 -9.22 16 15 C 0.17 8.81 5.09 -21.29 -0.11 8.70 16 16 C -0.47 -24.44 7.65 23.46 0.18 -24.26 16 17 H 0.09 4.44 5.74 -2.91 -0.02 4.42 16 18 C 0.04 1.93 5.23 85.26 0.45 2.38 16 19 N -0.81 -41.09 10.88 21.82 0.24 -40.86 16 20 Si 0.97 37.81 29.58 68.60 2.03 39.84 16 21 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 23 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 24 H 0.06 1.95 7.56 -2.38 -0.02 1.94 16 25 H 0.04 1.60 6.39 -2.38 -0.02 1.59 16 26 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.40 4.38 9.12 -74.05 -0.68 3.71 16 30 H 0.42 14.19 8.31 -96.73 -0.80 13.39 16 31 H 0.12 4.95 7.33 -2.91 -0.02 4.92 16 32 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 33 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 34 H 0.11 5.79 6.23 -2.91 -0.02 5.78 16 35 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 Total: -1.00 -68.08 304.20 -2.41 -70.49 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: -0.34 Total: 37.60 kcal Atomic # 6 Polarization: -74.52 SS G_CDS: 2.79 Total: -71.73 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -0.54 Total: -80.83 kcal Atomic # 8 Polarization: -109.47 SS G_CDS: -6.08 Total: -115.54 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Atomic # 16 Polarization: 120.45 SS G_CDS: -0.28 Total: 120.17 kcal Total: -68.08 -2.41 -70.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585708270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.725 kcal (2) G-P(sol) polarization free energy of solvation -68.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds